Query psy6737
Match_columns 130
No_of_seqs 159 out of 1067
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:10:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 99.8 1.4E-17 3E-22 126.5 12.1 98 1-98 548-646 (663)
2 PTZ00009 heat shock 70 kDa pro 99.6 3.7E-14 8E-19 115.2 15.0 98 1-98 520-617 (653)
3 PLN03184 chloroplast Hsp70; Pr 99.4 5.8E-12 1.3E-16 102.8 14.3 94 1-99 547-640 (673)
4 PRK13411 molecular chaperone D 99.3 3.3E-11 7.1E-16 98.2 12.1 95 1-98 510-604 (653)
5 KOG0101|consensus 99.3 9.9E-12 2.2E-16 99.2 8.8 94 1-96 522-615 (620)
6 PTZ00400 DnaK-type molecular c 99.2 2.9E-10 6.2E-15 92.8 11.0 93 1-98 549-641 (663)
7 PRK00290 dnaK molecular chaper 99.1 7.1E-10 1.5E-14 90.0 10.9 91 1-96 508-598 (627)
8 TIGR02350 prok_dnaK chaperone 99.0 2.2E-09 4.8E-14 86.7 10.8 89 1-94 506-594 (595)
9 CHL00094 dnaK heat shock prote 99.0 3.6E-09 7.9E-14 85.9 10.9 90 1-95 510-599 (621)
10 PRK13410 molecular chaperone D 99.0 8E-09 1.7E-13 84.5 11.7 91 1-94 510-602 (668)
11 PRK05183 hscA chaperone protei 98.8 4.5E-08 9.8E-13 79.5 11.3 90 1-95 512-601 (616)
12 PTZ00186 heat shock 70 kDa pre 98.8 9.2E-08 2E-12 78.2 12.8 92 1-96 535-626 (657)
13 TIGR01991 HscA Fe-S protein as 98.8 1E-07 2.3E-12 77.2 11.4 90 1-95 496-585 (599)
14 PRK01433 hscA chaperone protei 98.7 1.9E-07 4E-12 75.7 11.4 83 1-88 490-572 (595)
15 PF00012 HSP70: Hsp70 protein; 98.6 9E-07 2E-11 71.3 10.8 88 2-94 513-601 (602)
16 KOG0102|consensus 98.5 5.6E-07 1.2E-11 71.1 7.6 94 1-96 535-628 (640)
17 KOG0103|consensus 98.4 1.1E-06 2.3E-11 71.0 8.2 79 7-86 560-639 (727)
18 COG0443 DnaK Molecular chapero 98.3 1.1E-05 2.4E-10 65.3 11.6 88 1-95 491-578 (579)
19 KOG0104|consensus 98.2 1.9E-05 4.1E-10 64.7 10.8 89 6-94 647-736 (902)
20 PF10458 Val_tRNA-synt_C: Valy 56.8 35 0.00076 19.4 6.6 44 18-61 9-52 (66)
21 PLN02943 aminoacyl-tRNA ligase 35.8 3.2E+02 0.0068 24.3 8.9 45 17-61 893-937 (958)
22 PTZ00419 valyl-tRNA synthetase 35.3 3.2E+02 0.007 24.3 9.2 45 18-62 934-978 (995)
23 COG5185 HEC1 Protein involved 34.8 2.6E+02 0.0056 23.0 9.4 64 1-66 286-362 (622)
24 PF11593 Med3: Mediator comple 31.1 65 0.0014 25.2 3.2 15 49-63 23-37 (379)
25 PF08312 cwf21: cwf21 domain; 30.4 94 0.002 16.6 5.7 38 49-87 5-42 (46)
26 KOG0994|consensus 29.7 2.9E+02 0.0063 25.6 7.0 13 25-37 1473-1485(1758)
27 PF04614 Pex19: Pex19 protein 29.0 1.3E+02 0.0027 22.1 4.4 45 45-89 136-185 (248)
28 KOG0103|consensus 27.5 1.8E+02 0.0038 24.9 5.3 43 49-91 671-724 (727)
29 PF08006 DUF1700: Protein of u 27.0 2.1E+02 0.0045 19.5 6.3 56 27-91 5-62 (181)
30 PRK05729 valS valyl-tRNA synth 26.5 4.4E+02 0.0095 23.1 8.6 44 18-61 816-859 (874)
31 TIGR00310 ZPR1_znf ZPR1 zinc f 26.3 1.6E+02 0.0034 20.8 4.3 7 26-32 99-105 (192)
32 PF03367 zf-ZPR1: ZPR1 zinc-fi 25.7 1.4E+02 0.003 20.4 3.8 12 26-37 101-112 (161)
33 PRK06030 hypothetical protein; 24.9 2.1E+02 0.0045 18.7 5.7 56 30-92 62-119 (124)
34 PF06780 Erp_C: Erp protein C- 24.9 1.9E+02 0.0041 19.5 4.2 18 50-67 116-133 (146)
35 PF06075 DUF936: Plant protein 23.3 2.8E+02 0.006 23.2 5.7 60 30-90 504-567 (579)
36 PF15466 DUF4635: Domain of un 22.1 1.7E+02 0.0038 19.1 3.5 37 55-91 83-119 (135)
37 PF02686 Glu-tRNAGln: Glu-tRNA 20.3 1.7E+02 0.0036 16.5 3.0 22 45-66 1-22 (72)
No 1
>KOG0100|consensus
Probab=99.76 E-value=1.4e-17 Score=126.46 Aligned_cols=98 Identities=51% Similarity=0.850 Sum_probs=93.2
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccc-hhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED-EKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQ 79 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~-~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~ 79 (130)
||++|++|+++|+..+++++++|+||+|.|++++++.+ +.++..|+.++++.+..++.++.+||..+.+++.++++++.
T Consensus 548 Mv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~ 627 (663)
T KOG0100|consen 548 MVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKK 627 (663)
T ss_pred HHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 89999999999999999999999999999999999987 45899999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHHHccCC
Q psy6737 80 KELEAICNPIITKLYQGSG 98 (130)
Q Consensus 80 ~~L~~~~~~i~~~~~~~~~ 98 (130)
++|+.++.||+.++|..++
T Consensus 628 kele~vv~PiisklY~~ag 646 (663)
T KOG0100|consen 628 KELEAVVQPIISKLYGGAG 646 (663)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 9999999999999997533
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.60 E-value=3.7e-14 Score=115.23 Aligned_cols=98 Identities=58% Similarity=1.019 Sum_probs=88.6
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++...++..+|+..+++.+++|.+|+|||.+++.|.+..+...+++++++.+...|.++.+||+.++.++...|+.++.
T Consensus 520 ~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~ 599 (653)
T PTZ00009 520 MVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQK 599 (653)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45677889999999999999999999999999999975458889999999999999999999999876778899999999
Q ss_pred HHHHHHHHHHHHHHccCC
Q psy6737 81 ELEAICNPIITKLYQGSG 98 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~~~ 98 (130)
+|+..+.|+..+++..++
T Consensus 600 eL~~~~~pi~~r~~~~~~ 617 (653)
T PTZ00009 600 EVESVCNPIMTKMYQAAG 617 (653)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999886433
No 3
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.42 E-value=5.8e-12 Score=102.77 Aligned_cols=94 Identities=20% Similarity=0.391 Sum_probs=85.2
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+++++++..+|+..+.+.+++|++|.|||.+++.|.+ +...+++++++.+...|.++++||+.+ +...++.++.
T Consensus 547 ~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e--~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~ 621 (673)
T PLN03184 547 MVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE--LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMA 621 (673)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 56788999999999999999999999999999999963 778999999999999999999999976 5689999999
Q ss_pred HHHHHHHHHHHHHHccCCC
Q psy6737 81 ELEAICNPIITKLYQGSGG 99 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~~~~ 99 (130)
+|...+.++..++|.++++
T Consensus 622 ~l~~~l~~l~~~~~~~~~~ 640 (673)
T PLN03184 622 ALNQEVMQIGQSLYNQPGA 640 (673)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999999998865443
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.31 E-value=3.3e-11 Score=98.17 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=87.1
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+++++++..+|+..+.+.+++|.+|+|||.+++.|.+ +...+++++++.+...|..+++||+.+ +++...|+.+++
T Consensus 510 ~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~--~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~ 586 (653)
T PRK13411 510 MRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE--NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLE 586 (653)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 57889999999999999999999999999999999975 578999999999999999999999984 457899999999
Q ss_pred HHHHHHHHHHHHHHccCC
Q psy6737 81 ELEAICNPIITKLYQGSG 98 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~~~ 98 (130)
+|++.+.++..++|.+++
T Consensus 587 el~~~~~~i~~~~y~~~~ 604 (653)
T PRK13411 587 EFQQALLAIGAEVYQQGG 604 (653)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999987543
No 5
>KOG0101|consensus
Probab=99.31 E-value=9.9e-12 Score=99.20 Aligned_cols=94 Identities=77% Similarity=1.175 Sum_probs=88.6
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+.+|+.|..+|...+.++.++|.||+|+|.++..++++ .+.++++++.++...|.++..||+.++.+.++++..+..
T Consensus 522 m~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~--~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~ 599 (620)
T KOG0101|consen 522 MVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDE--KGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQK 599 (620)
T ss_pred hhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhh--ccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence 788999999999999999999999999999999999874 279999999999999999999999987778999999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy6737 81 ELEAICNPIITKLYQG 96 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~ 96 (130)
+|+..|.||+.++|.+
T Consensus 600 el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 600 ELELVCNPIISKLYQG 615 (620)
T ss_pred HHHhhccHHHHhhhcc
Confidence 9999999999999864
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.17 E-value=2.9e-10 Score=92.84 Aligned_cols=93 Identities=32% Similarity=0.540 Sum_probs=84.9
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++++++.+|+..+.+.+++|.+|+|||.+++.|.+ +...+++++++.+...|..+++||+.+ +...|+.+++
T Consensus 549 ~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e--~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~ 623 (663)
T PTZ00400 549 MVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD--LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTK 623 (663)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 46788899999999999999999999999999999974 788999999999999999999999976 5789999999
Q ss_pred HHHHHHHHHHHHHHccCC
Q psy6737 81 ELEAICNPIITKLYQGSG 98 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~~~ 98 (130)
+|+..+.++..++|.+++
T Consensus 624 eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 624 QLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999999999999886533
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.12 E-value=7.1e-10 Score=90.04 Aligned_cols=91 Identities=29% Similarity=0.461 Sum_probs=83.4
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++.++..+|+..+.+.+++|.+|+|||.+++.|.+ +...+++++++.+...|+.+++||+.+ +.+.|+.+++
T Consensus 508 ~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~--~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~ 582 (627)
T PRK00290 508 MVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE--LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTE 582 (627)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 46778889999999999999999999999999999973 778899999999999999999999975 5789999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy6737 81 ELEAICNPIITKLYQG 96 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~ 96 (130)
+|+..+.++..++|.+
T Consensus 583 ~L~~~~~~~~~~~~~~ 598 (627)
T PRK00290 583 ELTQASQKLGEAMYQQ 598 (627)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998863
No 8
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.05 E-value=2.2e-09 Score=86.70 Aligned_cols=89 Identities=27% Similarity=0.448 Sum_probs=80.5
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++.++...|+..+.+.+++|.+|+|||.+++.|.+ +...+++++++.+...++++++||+.+ +...|+.+++
T Consensus 506 ~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~--~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~ 580 (595)
T TIGR02350 506 MVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTE 580 (595)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 35677888999999999999999999999999999974 577899999999999999999999976 5689999999
Q ss_pred HHHHHHHHHHHHHH
Q psy6737 81 ELEAICNPIITKLY 94 (130)
Q Consensus 81 ~L~~~~~~i~~~~~ 94 (130)
+|+..+.++..++|
T Consensus 581 ~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 581 ELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987765
No 9
>CHL00094 dnaK heat shock protein 70
Probab=99.02 E-value=3.6e-09 Score=85.89 Aligned_cols=90 Identities=30% Similarity=0.462 Sum_probs=82.7
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++.++..+|+..+.+.+++|.+|+|||.+++.|.+ +...+++++++.+...|..+++||+.+ +...++++++
T Consensus 510 ~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~ 584 (621)
T CHL00094 510 MVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE--LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLE 584 (621)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 46778889999999999999999999999999999974 778899999999999999999999976 4589999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6737 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|+..+.++..++|.
T Consensus 585 ~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 585 ELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998876
No 10
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.98 E-value=8e-09 Score=84.49 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=78.5
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccc--hhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED--EKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHK 78 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~--~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~ 78 (130)
|++++++++.+|+..+.+++++|.+|.|||.+++.|.+ ..+...+++++++.+...|+.+++||+.+ +...++..
T Consensus 510 ~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~---~~~~~~~~ 586 (668)
T PRK13410 510 MIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD---DDRELDLA 586 (668)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 57889999999999999999999999999999999975 24778899999999999999999999876 45677777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6737 79 QKELEAICNPIITKLY 94 (130)
Q Consensus 79 ~~~L~~~~~~i~~~~~ 94 (130)
+.+|...+..+...++
T Consensus 587 ~~~~~~~l~~~~~~~~ 602 (668)
T PRK13410 587 VADLQEALYGLNREVR 602 (668)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776554
No 11
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.84 E-value=4.5e-08 Score=79.50 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=82.1
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++++++.+|...++..+++|+++.|||.+++.+.+ .+..++.+++..+...+.+++.||..+ +...|+.+++
T Consensus 512 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~ 586 (616)
T PRK05183 512 MLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIK 586 (616)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 57889999999999999999999999999999999964 457899999999999999999999875 6789999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6737 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|+..+.++..+.++
T Consensus 587 ~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 587 ALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987765
No 12
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.83 E-value=9.2e-08 Score=78.21 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=82.8
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+++++.|+.+|...+.+++++|+++.+++.+++.+.+ . ..++.+++..+...+..++.||..+ +.+...|+.+++
T Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 610 (657)
T PTZ00186 535 MIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATD 610 (657)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHH
Confidence 68899999999999999999999999999999999974 2 4689999999999999999999853 346789999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy6737 81 ELEAICNPIITKLYQG 96 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~ 96 (130)
+|+..+.++..++|.+
T Consensus 611 ~l~~~~~~~~~~~~~~ 626 (657)
T PTZ00186 611 KLQKAVMECGRTEYQQ 626 (657)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.78 E-value=1e-07 Score=77.20 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=81.5
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++++++.+|...+...+++|+++.|+|.+++.+.+ ++..+++++++.+...+..++.||+.+ +...++.+.+
T Consensus 496 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~ 570 (599)
T TIGR01991 496 MLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA--DGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIE 570 (599)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 57889999999999999999999999999999999864 566899999999999999999999876 5689999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6737 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|...+.++..+.+.
T Consensus 571 ~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 571 ALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876665
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.73 E-value=1.9e-07 Score=75.70 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=70.7
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++++++.+|...+..++++|+++.+++.+++.+.+ +...++.++++.+...+..++.||..+ +...|+..++
T Consensus 490 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~ 564 (595)
T PRK01433 490 MLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE--LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIK 564 (595)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 67899999999999999999999999999999999975 567799999999999999999999865 4556666666
Q ss_pred HHHHHHHH
Q psy6737 81 ELEAICNP 88 (130)
Q Consensus 81 ~L~~~~~~ 88 (130)
+|+..+.+
T Consensus 565 ~~~~~~~~ 572 (595)
T PRK01433 565 EFKSKIKK 572 (595)
T ss_pred HHHHHHHH
Confidence 65555555
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.56 E-value=9e-07 Score=71.34 Aligned_cols=88 Identities=33% Similarity=0.602 Sum_probs=75.0
Q ss_pred hhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhC-CccCHHHHHHHHH
Q psy6737 2 VNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQK 80 (130)
Q Consensus 2 i~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~-~~~~~~~i~~~~~ 80 (130)
.+..+.+...|+..+...+++|.+|.++|.++..+.+. ...++++++ ...|.+...||+.. ...+.++|+.++.
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~ 587 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLE 587 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 45667788999999999999999999999999999873 567887776 67777788898865 3457899999999
Q ss_pred HHHHHHHHHHHHHH
Q psy6737 81 ELEAICNPIITKLY 94 (130)
Q Consensus 81 ~L~~~~~~i~~~~~ 94 (130)
+|+....+|..++|
T Consensus 588 ~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 588 ELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999876
No 16
>KOG0102|consensus
Probab=98.49 E-value=5.6e-07 Score=71.08 Aligned_cols=94 Identities=19% Similarity=0.397 Sum_probs=85.4
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
||.+|++|+..|..+|+.++..|.++++++..+..+.. +...++.+...+|...+..++..+..-...+...++.+..
T Consensus 535 mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~--~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~ 612 (640)
T KOG0102|consen 535 MVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE--FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMS 612 (640)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh--hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHH
Confidence 89999999999999999999999999999999999986 7889999999999999999999887533335688999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy6737 81 ELEAICNPIITKLYQG 96 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~~ 96 (130)
.|++...+++..+|..
T Consensus 613 ~l~q~~lkl~es~~k~ 628 (640)
T KOG0102|consen 613 ALQQASLKLFESAYKN 628 (640)
T ss_pred HHHHhhhHHHHHHHhh
Confidence 9999999999999974
No 17
>KOG0103|consensus
Probab=98.44 E-value=1.1e-06 Score=71.04 Aligned_cols=79 Identities=32% Similarity=0.516 Sum_probs=70.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhC-CccCHHHHHHHHHHHHHH
Q psy6737 7 KYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEAI 85 (130)
Q Consensus 7 ~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~-~~~~~~~i~~~~~~L~~~ 85 (130)
++..+|+...++.+++|.+|.|||.++..|.+ .|..++++.+++.+...|..+.+||+.+ .+.++..|..++.+|...
T Consensus 560 ~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~ 638 (727)
T KOG0103|consen 560 KMILQDKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKL 638 (727)
T ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhh
Confidence 46678999999999999999999999999997 5888999999999999999999999975 566788888888888776
Q ss_pred H
Q psy6737 86 C 86 (130)
Q Consensus 86 ~ 86 (130)
.
T Consensus 639 g 639 (727)
T KOG0103|consen 639 G 639 (727)
T ss_pred h
Confidence 6
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-05 Score=65.35 Aligned_cols=88 Identities=31% Similarity=0.502 Sum_probs=80.5
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6737 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+++++.+++.|...++.++.+|.++.+++.++..|.+ .. .++..++..+...+.+++.||... ..+|+.+.+
T Consensus 491 ~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 563 (579)
T COG0443 491 MVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV-KVSEEEKEKIEEAITDLEEALEGE----KEEIKAKIE 563 (579)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc-cCCHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHH
Confidence 78999999999999999999999999999999999987 34 899999999999999999999882 688999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6737 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
.|+....++....+.
T Consensus 564 ~l~~~~~~~~~~~~~ 578 (579)
T COG0443 564 ELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877663
No 19
>KOG0104|consensus
Probab=98.23 E-value=1.9e-05 Score=64.68 Aligned_cols=89 Identities=17% Similarity=0.362 Sum_probs=78.5
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhC-CccCHHHHHHHHHHHHH
Q psy6737 6 EKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEA 84 (130)
Q Consensus 6 e~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~-~~~~~~~i~~~~~~L~~ 84 (130)
+.+...|..+-++.++.|.||.|+|.+...|.+++|....+++++..|+..|..+..||..+ .......+.+++.+|+.
T Consensus 647 ~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~ 726 (902)
T KOG0104|consen 647 EDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKK 726 (902)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 45667788888889999999999999999999888999999999999999999999999875 44577889999999999
Q ss_pred HHHHHHHHHH
Q psy6737 85 ICNPIITKLY 94 (130)
Q Consensus 85 ~~~~i~~~~~ 94 (130)
++..+..+..
T Consensus 727 l~~~~~~R~e 736 (902)
T KOG0104|consen 727 LETSKNFREE 736 (902)
T ss_pred HHhhhhHHHH
Confidence 9988876653
No 20
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=56.78 E-value=35 Score=19.42 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHH
Q psy6737 18 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVI 61 (130)
Q Consensus 18 ~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~ 61 (130)
...-...++..|..+...|..+.|....|++..+.-...+.++.
T Consensus 9 L~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~ 52 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELE 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHH
Confidence 34445567777777788887776766667666555555554443
No 21
>PLN02943 aminoacyl-tRNA ligase
Probab=35.85 E-value=3.2e+02 Score=24.31 Aligned_cols=45 Identities=7% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHH
Q psy6737 17 AVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVI 61 (130)
Q Consensus 17 ~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~ 61 (130)
+.......++.-+..+++.|..+.|....|++..+.-...+.++.
T Consensus 893 rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~ 937 (958)
T PLN02943 893 RLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAE 937 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHH
Confidence 344555667777777788887777777777777666666655443
No 22
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=35.25 E-value=3.2e+02 Score=24.28 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHH
Q psy6737 18 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62 (130)
Q Consensus 18 ~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~ 62 (130)
.......++.-+..++..|..+.|....+++..++-+..+.++..
T Consensus 934 L~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~ 978 (995)
T PTZ00419 934 LEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNE 978 (995)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHH
Confidence 445556667777777888887777777788777777776665543
No 23
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.79 E-value=2.6e+02 Score=22.99 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=33.6
Q ss_pred ChhHHHhhHH----HhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccC---------CHHHHHHHHHHHHHHHHHHhh
Q psy6737 1 MVNDAEKYKA----EDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKI---------SDAERTQILDKCNDVIKWLDA 66 (130)
Q Consensus 1 Mi~eAe~~~~----eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l---------~~~~~~~i~~~l~~~~~wL~~ 66 (130)
||++|++... -+++.|....--|.++.++..++..... +.+.+ .+++.+.+...++.+...|..
T Consensus 286 ~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~--~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 286 KIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE--WPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4556655433 3444444455567777777777766654 22222 233444555555555555543
No 24
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.14 E-value=65 Score=25.21 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy6737 49 ERTQILDKCNDVIKW 63 (130)
Q Consensus 49 ~~~~i~~~l~~~~~w 63 (130)
-|..|...|.++++-
T Consensus 23 ~Kd~V~~~I~ea~~s 37 (379)
T PF11593_consen 23 SKDSVMDKISEAQDS 37 (379)
T ss_pred hHHHHHHHHHHHHhc
Confidence 456666677666653
No 25
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=30.41 E-value=94 Score=16.57 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHH
Q psy6737 49 ERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICN 87 (130)
Q Consensus 49 ~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~ 87 (130)
.+-.|.-.|-++++-|.... .+...|..++..++..+.
T Consensus 5 rkR~IElk~~elrd~LEe~g-~~~eeIe~kv~~~R~~L~ 42 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQG-YSEEEIEEKVDELRKKLL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 34567777777777776632 356778888887776543
No 26
>KOG0994|consensus
Probab=29.72 E-value=2.9e+02 Score=25.61 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhcc
Q psy6737 25 LESYCFNMKSTVE 37 (130)
Q Consensus 25 lE~~i~~~~~~l~ 37 (130)
|+.+|.++++.|.
T Consensus 1473 l~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHhc
Confidence 4444444444443
No 27
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=28.96 E-value=1.3e+02 Score=22.07 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=24.9
Q ss_pred CCHHH-HHHHHHHHHHHHHHHhhCC-c---cCHHHHHHHHHHHHHHHHHH
Q psy6737 45 ISDAE-RTQILDKCNDVIKWLDANQ-L---AEKEEFEHKQKELEAICNPI 89 (130)
Q Consensus 45 l~~~~-~~~i~~~l~~~~~wL~~~~-~---~~~~~i~~~~~~L~~~~~~i 89 (130)
++++. ..-++....++-.||..+. . .+...|.....-+..+|..+
T Consensus 136 ~SKevLYePmKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~~~v~~I~~~f 185 (248)
T PF04614_consen 136 LSKEVLYEPMKELRDKYPEWLEENKSKLSAEDYERYEKQYELVKEICAIF 185 (248)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhhhhhHHHHHHHhHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 3566777777888886652 1 23445555555555555443
No 28
>KOG0103|consensus
Probab=27.54 E-value=1.8e+02 Score=24.93 Aligned_cols=43 Identities=33% Similarity=0.574 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC--------cc---CHHHHHHHHHHHHHHHHHHHH
Q psy6737 49 ERTQILDKCNDVIKWLDANQ--------LA---EKEEFEHKQKELEAICNPIIT 91 (130)
Q Consensus 49 ~~~~i~~~l~~~~~wL~~~~--------~~---~~~~i~~~~~~L~~~~~~i~~ 91 (130)
+..++...|.+.+.|+.... .+ ...+++...++|.+.|.+++.
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~ 724 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIIS 724 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccccc
Confidence 55677778888999997531 12 236778888888888877653
No 29
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.99 E-value=2.1e+02 Score=19.49 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=32.1
Q ss_pred HHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhC--CccCHHHHHHHHHHHHHHHHHHHH
Q psy6737 27 SYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN--QLAEKEEFEHKQKELEAICNPIIT 91 (130)
Q Consensus 27 ~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~--~~~~~~~i~~~~~~L~~~~~~i~~ 91 (130)
.|+.++++.|. .+|+++++.+ ++..++++++. +..+.+++-+.+-.=+..+..+..
T Consensus 5 efL~~L~~~L~------~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 5 EFLNELEKYLK------KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHH------cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45556666554 3777777655 45556666542 112446666666666666666654
No 30
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=26.51 E-value=4.4e+02 Score=23.06 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHH
Q psy6737 18 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVI 61 (130)
Q Consensus 18 ~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~ 61 (130)
.......++..+..++..|..+.|....|++..+.-...+.++.
T Consensus 816 L~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~ 859 (874)
T PRK05729 816 LEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYE 859 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHH
Confidence 34445556666666777777766777777777666666655443
No 31
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=26.31 E-value=1.6e+02 Score=20.80 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy6737 26 ESYCFNM 32 (130)
Q Consensus 26 E~~i~~~ 32 (130)
|++|.++
T Consensus 99 EGlL~~~ 105 (192)
T TIGR00310 99 EGVLRRV 105 (192)
T ss_pred HhHHHHH
Confidence 3333333
No 32
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=25.68 E-value=1.4e+02 Score=20.38 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=5.7
Q ss_pred HHHHHHHHhhcc
Q psy6737 26 ESYCFNMKSTVE 37 (130)
Q Consensus 26 E~~i~~~~~~l~ 37 (130)
|++|.++...|.
T Consensus 101 EGlL~~i~~~L~ 112 (161)
T PF03367_consen 101 EGLLMRIIDNLE 112 (161)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444544444444
No 33
>PRK06030 hypothetical protein; Provisional
Probab=24.92 E-value=2.1e+02 Score=18.72 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=37.3
Q ss_pred HHHHhhccc--hhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHH
Q psy6737 30 FNMKSTVED--EKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITK 92 (130)
Q Consensus 30 ~~~~~~l~~--~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~~i~~~ 92 (130)
|-++..+.. ++.+..+. .+...+...|..+++++ .+ ..++..+..|...+..+...
T Consensus 62 YL~r~~~~~sl~~IG~~FG-RDHSTV~haikkIe~~~-~d-----~~lk~~v~~L~~~l~~~~~~ 119 (124)
T PRK06030 62 YVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLR-DD-----AAFDARVSVLERIVNSAFTA 119 (124)
T ss_pred HHHHHHcCCCHHHHHHHHC-CChhHHHHHHHHHHHHh-hC-----HHHHHHHHHHHHHHHHHHHH
Confidence 444444443 23555565 66778888888888877 43 57888888888877666543
No 34
>PF06780 Erp_C: Erp protein C-terminus; InterPro: IPR009618 This entry represents the C terminus of bacterial Erp proteins that seem to be specific to Borrelia burgdorferi (a causative agent of Lyme disease). Borrelia Erp proteins are particularly heterogeneous, which might enable them to interact with a wide variety of host components [].
Probab=24.88 E-value=1.9e+02 Score=19.48 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy6737 50 RTQILDKCNDVIKWLDAN 67 (130)
Q Consensus 50 ~~~i~~~l~~~~~wL~~~ 67 (130)
.++++..|.+++.+|.+.
T Consensus 116 LekLKs~LekvK~YL~d~ 133 (146)
T PF06780_consen 116 LEKLKSKLEKVKEYLKDS 133 (146)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 445555555555555543
No 35
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=23.32 E-value=2.8e+02 Score=23.24 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=35.5
Q ss_pred HHHHhhccchhhccc--CCHHHHHHHHHHHHHHHHHHhhCC-ccC-HHHHHHHHHHHHHHHHHHH
Q psy6737 30 FNMKSTVEDEKLKDK--ISDAERTQILDKCNDVIKWLDANQ-LAE-KEEFEHKQKELEAICNPII 90 (130)
Q Consensus 30 ~~~~~~l~~~~~~~~--l~~~~~~~i~~~l~~~~~wL~~~~-~~~-~~~i~~~~~~L~~~~~~i~ 90 (130)
--+++.|+. .|... ....+...+...|..+.+||+.-. ..+ .+...+.++.|+..+..++
T Consensus 504 ~FVE~aLD~-gf~~~~~~~~~~IA~~LsQLKrVNdWLD~v~~~~~~~~~~~E~ierLrkKIY~fL 567 (579)
T PF06075_consen 504 KFVEKALDA-GFKKSRGEDDGQIAGMLSQLKRVNDWLDEVGSGSNESEELVETIERLRKKIYGFL 567 (579)
T ss_pred HHHHHHHhc-cchhcccCCCcchHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence 345666653 12221 223445568889999999998631 111 1345677788877777665
No 36
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=22.05 E-value=1.7e+02 Score=19.06 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHH
Q psy6737 55 DKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIIT 91 (130)
Q Consensus 55 ~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~~i~~ 91 (130)
.-+..++.||..+-..=.+.+...+.+|++....+-.
T Consensus 83 EPik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~ 119 (135)
T PF15466_consen 83 EPIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEE 119 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899876222235566677777777766543
No 37
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=20.26 E-value=1.7e+02 Score=16.46 Aligned_cols=22 Identities=14% Similarity=0.530 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q psy6737 45 ISDAERTQILDKCNDVIKWLDA 66 (130)
Q Consensus 45 l~~~~~~~i~~~l~~~~~wL~~ 66 (130)
|++++...+...+..+..|++.
T Consensus 1 l~eeE~~~~~~~l~~il~~~~~ 22 (72)
T PF02686_consen 1 LTEEELEKLTKQLNDILDYVEK 22 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777776654
Done!