BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6738
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|B Chain B, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|C Chain C, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|D Chain D, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|E Chain E, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|F Chain F, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b
Length = 113
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 65/76 (85%)
Query: 19 ISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHK 78
+SAKN+LESY FN KS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+EFEHK
Sbjct: 8 VSAKNALESYAFNXKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHK 67
Query: 79 QKELEAICNPIITKLY 94
+KELE +CNPII+ LY
Sbjct: 68 RKELEQVCNPIISGLY 83
>pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of
Human Heat Shock Protein 70
Length = 75
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 64/74 (86%)
Query: 20 SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQ 79
SAKN+LESY FNMKS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+EFEHK+
Sbjct: 2 SAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKR 61
Query: 80 KELEAICNPIITKL 93
KELE +CNPII+ L
Sbjct: 62 KELEQVCNPIISGL 75
>pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
pdb|1UD0|B Chain B, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
pdb|1UD0|C Chain C, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
pdb|1UD0|D Chain D, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
Length = 113
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 64/78 (82%)
Query: 18 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEH 77
V + LESY FN K+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH
Sbjct: 2 VPRGSHXLESYAFNXKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 78 KQKELEAICNPIITKLYQ 95
+QKELE +CNPIITKLYQ
Sbjct: 62 QQKELEKVCNPIITKLYQ 79
>pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|B Chain B, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|C Chain C, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|D Chain D, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|E Chain E, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|F Chain F, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
Length = 120
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 62/72 (86%)
Query: 24 SLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELE 83
LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWLD+NQ AEKEEFEH+QK+LE
Sbjct: 22 GLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLE 81
Query: 84 AICNPIITKLYQ 95
+ NPII+KLYQ
Sbjct: 82 GLANPIISKLYQ 93
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 37
MV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 518 MVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 37
MV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 518 MVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
pdb|7HSC|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
Length = 159
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
MV +AEKYKAEDEKQ+ +S+KNSLE
Sbjct: 134 MVQEAEKYKAEDEKQRDKVSSKNSLE 159
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
Length = 543
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
MV +AEKYKAEDEKQ+ +S+KNSLE
Sbjct: 518 MVQEAEKYKAEDEKQRDKVSSKNSLE 543
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 22 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQK 80
KN+LE Y + ++ +E+E SDAE+T++ N +WL D + K ++ K +
Sbjct: 553 KNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGXLNKAEEWLYDEGFDSIKAKYIAKYE 611
Query: 81 ELEAICNPIITKLY 94
EL ++ N II Y
Sbjct: 612 ELASLGN-IIRGRY 624
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 22 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQK 80
KN+LE Y + ++ +E+E SDAE+T++ N +WL D + K ++ K +
Sbjct: 573 KNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYE 631
Query: 81 ELEAICNPIITKLY 94
EL ++ N II Y
Sbjct: 632 ELASLGN-IIRGRY 644
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 22 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQK 80
KN+LE Y + ++ +E+E SDAE+T++ N +WL D + K ++ K +
Sbjct: 570 KNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYE 628
Query: 81 ELEAICNPIITKLY 94
EL ++ N II Y
Sbjct: 629 ELASLGN-IIRGRY 641
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 22 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQK 80
KN+LE Y + ++ +E+E SDAE+T++ N +WL D + K ++ K +
Sbjct: 553 KNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYE 611
Query: 81 ELEAICNPIITKLY 94
EL ++ N II Y
Sbjct: 612 ELASLGN-IIRGRY 624
>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D
Precursor From C.Elegans
Length = 152
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
M+NDA+K+ A+D+ QK + ++N LE
Sbjct: 127 MINDADKFAADDQAQKEKVESRNELE 152
>pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2
Protein From Saccharomyces Cerevisiae
Length = 152
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
MV +AEK+ +ED KA + ++N LE
Sbjct: 127 MVEEAEKFASEDASIKAKVESRNKLE 152
>pdb|1GC5|A Chain A, Crystal Structure Of A Novel Adp-Dependent Glucokinase
From Thermococcus Litoralis
Length = 467
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 59 DVIKWLDANQLAEKEEFEHKQKELEAICNP 88
D IK+LDA+ L ++ + K+K E I NP
Sbjct: 42 DAIKYLDADDLEKRVTEKGKEKVFEIIENP 71
>pdb|1VPR|A Chain A, Crystal Structure Of A Luciferase Domain From The
Dinoflagellate Lingulodinium Polyedrum
Length = 374
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 46 SDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPI 89
+D++RT + D L Q+A + F++ K L+ C P+
Sbjct: 100 ADSDRTLCFNNFQDPCPQLTKEQVAXCKGFDYGDKTLKLPCGPL 143
>pdb|3N09|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|B Chain B, Atomic Model Of An Infectious Rotavirus Particle
Length = 800
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 2 VNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAER 50
VN Y A+I+A N L Y MKS VED + +I D R
Sbjct: 528 VNFHSNYNERINDAVAIITAANRLNLYQKKMKSIVEDFLKRLQIFDISR 576
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 2 VNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERT 51
VN Y A+I+A N L Y MK+ VED + I D R
Sbjct: 528 VNFHSNYNERINDAVAIITAANRLNLYQKKMKAIVEDFLKRLHIFDVARV 577
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,729,558
Number of Sequences: 62578
Number of extensions: 88086
Number of successful extensions: 356
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 51
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)