Query psy6738
Match_columns 130
No_of_seqs 159 out of 1067
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:12:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lof_A Heat shock 70 kDa prote 99.8 1.3E-17 4.4E-22 107.0 12.0 83 14-96 3-85 (113)
2 4e81_A Chaperone protein DNAK; 99.6 1.2E-15 4E-20 108.1 10.6 90 1-95 127-216 (219)
3 2p32_A Heat shock 70 kDa prote 99.6 7.2E-16 2.5E-20 99.8 8.4 82 15-96 13-94 (120)
4 1ud0_A HSC70, 70 kDa heat-shoc 99.6 4.2E-15 1.4E-19 95.1 8.2 79 18-96 2-80 (113)
5 1u00_A HSC66, chaperone protei 99.6 3.2E-14 1.1E-18 101.2 11.6 90 1-95 124-213 (227)
6 4b9q_A Chaperone protein DNAK; 99.4 6E-13 2E-17 106.2 10.7 90 1-95 515-604 (605)
7 3d2f_A Heat shock protein homo 99.4 2.1E-12 7.2E-17 104.3 12.1 94 1-95 532-626 (675)
8 2kho_A Heat shock protein 70; 99.4 2.3E-12 7.9E-17 102.8 9.5 90 1-95 515-604 (605)
9 2a01_A Apolipoprotein A-I; fou 46.2 46 0.0016 23.1 5.4 47 18-64 112-163 (243)
10 3pvv_A Chromosomal replication 43.3 52 0.0018 19.7 5.5 43 39-87 54-96 (101)
11 1lj2_A NSP3-C, nonstructural R 41.0 60 0.002 19.8 8.8 47 8-58 16-62 (110)
12 1nfn_A Apolipoprotein E3; lipi 39.1 85 0.0029 21.0 6.0 62 16-94 106-167 (191)
13 1ug8_A Poly(A)-specific ribonu 36.2 22 0.00076 21.0 2.1 24 45-68 5-28 (87)
14 2lhr_A Iron-regulated surface 33.4 66 0.0023 18.0 4.6 17 44-60 38-54 (78)
15 3s84_A Apolipoprotein A-IV; fo 29.6 1.5E+02 0.0051 21.0 7.0 17 20-36 48-64 (273)
16 3zsu_A TLL2057 protein, cyanoq 28.2 76 0.0026 20.1 3.7 46 17-64 48-93 (130)
17 2wl8_A Peroxisomal biogenesis 26.7 73 0.0025 20.0 3.4 14 53-66 35-48 (126)
18 3uul_A Utrophin; spectrin repe 24.3 1.1E+02 0.0038 17.7 5.3 10 55-64 9-18 (118)
19 2yy0_A C-MYC-binding protein; 23.1 92 0.0031 16.3 3.5 17 71-87 20-36 (53)
20 3ls0_A SLL1638 protein, PSBQ; 22.8 86 0.0029 19.9 3.2 44 19-64 53-96 (133)
21 2lse_A Four helix bundle prote 27.6 19 0.00065 20.7 0.0 34 32-67 12-45 (101)
22 1t1e_A Kumamolisin; proenzyme, 20.3 2E+02 0.0068 22.5 5.5 43 23-67 52-98 (552)
No 1
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=99.76 E-value=1.3e-17 Score=107.00 Aligned_cols=83 Identities=67% Similarity=1.091 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHH
Q psy6738 14 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKL 93 (130)
Q Consensus 14 ~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~~i~~~~ 93 (130)
.+|++++++|.||+|||++++.|.++.+++.|+.+++..|...|.+++.||+.+..++.+.|+.++.+|+.++.+|+.++
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999875688999999999999999999999998766789999999999999999999999
Q ss_pred Hcc
Q psy6738 94 YQG 96 (130)
Q Consensus 94 ~~~ 96 (130)
|.+
T Consensus 83 y~~ 85 (113)
T 3lof_A 83 YQG 85 (113)
T ss_dssp HHC
T ss_pred HHh
Confidence 975
No 2
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=99.65 E-value=1.2e-15 Score=108.12 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=84.1
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6738 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+++|++|+.+|+..|++++++|.+++|||++++.|.+ +++.++.+++..|...|.++++||+.+ +...|+.+++
T Consensus 127 m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~--~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~ 201 (219)
T 4e81_A 127 MVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQ 201 (219)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 78999999999999999999999999999999999986 788999999999999999999999987 5799999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6738 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|+.++.+|+.+.|+
T Consensus 202 ~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 202 ELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998776
No 3
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=99.64 E-value=7.2e-16 Score=99.80 Aligned_cols=82 Identities=59% Similarity=0.950 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6738 15 QKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLY 94 (130)
Q Consensus 15 ~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~~i~~~~~ 94 (130)
+|++++++|.|++|||++++.|.++.++..|+++++..|...|.+++.||+.+..++...|+.++.+|+.++.+|+.++|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999997644788999999999999999999999865556889999999999999999999998
Q ss_pred cc
Q psy6738 95 QG 96 (130)
Q Consensus 95 ~~ 96 (130)
.+
T Consensus 93 ~~ 94 (120)
T 2p32_A 93 QS 94 (120)
T ss_dssp CC
T ss_pred Hh
Confidence 53
No 4
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=99.60 E-value=4.2e-15 Score=95.14 Aligned_cols=79 Identities=68% Similarity=1.093 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy6738 18 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 96 (130)
Q Consensus 18 ~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~~i~~~~~~~ 96 (130)
+++++|.|++|||++++.|.++.++..|+.+++..|...|.+++.||..+..++...|+.++++|+.++.+|..++|..
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~ 80 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQS 80 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999743478899999999999999999999985544567899999999999999999999964
No 5
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=99.57 E-value=3.2e-14 Score=101.21 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=84.3
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6738 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|+++++.|+.+|+..+++++++|.||+|||.+++.|.+ ++..++++++..|...|.+++.||+.+ +...|+.+++
T Consensus 124 ~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~--~~~~~~~~~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~ 198 (227)
T 1u00_A 124 MIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIK 198 (227)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 68899999999999999999999999999999999975 678999999999999999999999965 5789999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6738 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|+.++.+|..++|.
T Consensus 199 ~L~~~~~~i~~r~~~ 213 (227)
T 1u00_A 199 NVDKQTQDFAARRMD 213 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 6
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.44 E-value=6e-13 Score=106.24 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=83.8
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6738 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++++|+.+|+..|++++++|.+|.|+|.+++.|.+ ++..++.++++.|...|.++++||+.+ +.+.|+.+++
T Consensus 515 ~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~ 589 (605)
T 4b9q_A 515 MVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQ 589 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHH
T ss_pred HHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 78999999999999999999999999999999999985 788999999999999999999999986 5789999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6738 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|+..+.+|+.++|+
T Consensus 590 ~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 590 ELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998874
No 7
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.41 E-value=2.1e-12 Score=104.26 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=86.4
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhC-CccCHHHHHHHH
Q psy6738 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQ 79 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~-~~~~~~~i~~~~ 79 (130)
|++++++|+.+|+..+++.+++|.||+|||.+++.|.+ .+..++++++++.|...|.++++||+.+ .+++.++|+.++
T Consensus 532 ~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~ 610 (675)
T 3d2f_A 532 LIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEE-EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKY 610 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 68899999999999999999999999999999999975 4788999999999999999999999864 356789999999
Q ss_pred HHHHHHHHHHHHHHHc
Q psy6738 80 KELEAICNPIITKLYQ 95 (130)
Q Consensus 80 ~~L~~~~~~i~~~~~~ 95 (130)
++|+..+.||..++++
T Consensus 611 ~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 611 EELASLGNIIRGRYLA 626 (675)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 8
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.36 E-value=2.3e-12 Score=102.85 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=84.2
Q ss_pred ChhHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHH
Q psy6738 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80 (130)
Q Consensus 1 Mi~eAe~~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~ 80 (130)
|++++++|+.+|+..+++++++|.+|+|+|.+++.|.+ +...+++++++.|...|.++++||+.+ +...|+.+++
T Consensus 515 ~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~ 589 (605)
T 2kho_A 515 MVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQ 589 (605)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 68999999999999999999999999999999999975 788999999999999999999999864 6899999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy6738 81 ELEAICNPIITKLYQ 95 (130)
Q Consensus 81 ~L~~~~~~i~~~~~~ 95 (130)
+|+..+.+|..++|+
T Consensus 590 ~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 590 ELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998874
No 9
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=46.23 E-value=46 Score=23.12 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc--hhhcc---cCCHHHHHHHHHHHHHHHHHH
Q psy6738 18 VISAKNSLESYCFNMKSTVED--EKLKD---KISDAERTQILDKCNDVIKWL 64 (130)
Q Consensus 18 ~~eakn~lE~~i~~~~~~l~~--~~~~~---~l~~~~~~~i~~~l~~~~~wL 64 (130)
.-+.+..|..|+..++..+.. ..+.. .+..+-+.++...+.+++.-|
T Consensus 112 ~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 112 MELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555542 11222 235555666666666666655
No 10
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=43.27 E-value=52 Score=19.68 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=33.0
Q ss_pred hhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHH
Q psy6738 39 EKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICN 87 (130)
Q Consensus 39 ~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~ 87 (130)
++.+..+. .+...+..++..+.+++..+ ..+...+..|...+.
T Consensus 54 ~~IG~~fg-RDHsTV~ha~~ki~~~~~~d-----~~l~~~i~~l~~~l~ 96 (101)
T 3pvv_A 54 PKIGQAFG-RDHTTVMYAQRKILSEMAER-----REVFDHVKELTTRIR 96 (101)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHH
Confidence 45666777 77889999999999999886 567777777766544
No 11
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=41.03 E-value=60 Score=19.77 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=36.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHH
Q psy6738 8 YKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCN 58 (130)
Q Consensus 8 ~~~eD~~~r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~ 58 (130)
+.-+-...+..++.+|++.+++..++=.|+. ..++.+.|..+.+.|.
T Consensus 16 n~lq~~~~klE~dlq~ki~slisSiEw~l~S----mel~de~K~DieQqLn 62 (110)
T 1lj2_A 16 AELQVYNNKLERDLQNKIGSLTSSIEWYLRS----MELDPEIKADIEQQIN 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCChHHHHHHHHHhc
Confidence 3344556677789999999999999888863 5688888888877663
No 12
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=39.12 E-value=85 Score=20.96 Aligned_cols=62 Identities=8% Similarity=0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6738 16 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLY 94 (130)
Q Consensus 16 r~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~~~~~~~~i~~~~~~L~~~~~~i~~~~~ 94 (130)
+..-+++..|+-|...++..+.. --++.+..+.-...+++. .+...+.+|+..+.|++..+.
T Consensus 106 kdlEelr~kL~P~~eEL~~~l~~------~~Eelr~~L~Py~eelr~-----------kl~~~~eeLr~~l~P~~eelk 167 (191)
T 1nfn_A 106 ADMEDVCGRLVQYRGEVQAMLGQ------STEELRVRLASHLRKLRK-----------RLLRDADDLQKRLAVYQAGAR 167 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC------CCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhHHHHHH-----------HHHHHHHHHHHHhHHHHHHHH
Confidence 34445666666666666665542 123334444444444433 234455566666666665544
No 13
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=36.21 E-value=22 Score=20.95 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCC
Q psy6738 45 ISDAERTQILDKCNDVIKWLDANQ 68 (130)
Q Consensus 45 l~~~~~~~i~~~l~~~~~wL~~~~ 68 (130)
+|++.+.-|...+..+..||.++.
T Consensus 5 ip~e~k~~id~i~~kIe~FL~s~~ 28 (87)
T 1ug8_A 5 SSGDQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred cChHHHHHHHHHHHHHHHHHhCCC
Confidence 578889999999999999998763
No 14
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=33.38 E-value=66 Score=18.02 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=7.2
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy6738 44 KISDAERTQILDKCNDV 60 (130)
Q Consensus 44 ~l~~~~~~~i~~~l~~~ 60 (130)
.||+..+...+..|..+
T Consensus 38 kLPeklkaeYk~KL~~t 54 (78)
T 2lhr_A 38 KLPEKYKAEYKKKLDQT 54 (78)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 45544444444444333
No 15
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=29.62 E-value=1.5e+02 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy6738 20 SAKNSLESYCFNMKSTV 36 (130)
Q Consensus 20 eakn~lE~~i~~~~~~l 36 (130)
+.+..++.|...++..+
T Consensus 48 ~lr~~L~Py~~el~~~~ 64 (273)
T 3s84_A 48 ELQQRLEPYADQLRTQV 64 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555554444444
No 16
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=28.16 E-value=76 Score=20.09 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHH
Q psy6738 17 AVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 64 (130)
Q Consensus 17 ~~~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL 64 (130)
.+++.+|-+.+-+..++..|.- +...|.+.++......-.++..-|
T Consensus 48 ~W~~~Rn~IhGPlg~lr~~m~~--l~~~Llp~dqk~A~~lak~l~~~L 93 (130)
T 3zsu_A 48 DWQEARNIMRGPLGEMLMDMRA--LNRNLLAKDQPTPTALTRALTDDF 93 (130)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHH--HHHTSCGGGSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhchHHHHHHHHHH--HHHhcCHhhHHHHHHHHHHHHHHH
Confidence 4566666666666666666653 344554555444444444444333
No 17
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=26.75 E-value=73 Score=20.01 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhh
Q psy6738 53 ILDKCNDVIKWLDA 66 (130)
Q Consensus 53 i~~~l~~~~~wL~~ 66 (130)
++...++.-.||..
T Consensus 35 mKel~~kyP~WLe~ 48 (126)
T 2wl8_A 35 LKEITEKYPEWLQS 48 (126)
T ss_dssp HHHHHTTHHHHHHH
T ss_pred HHHHHHHhhHHHHh
Confidence 34444444444443
No 18
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.26 E-value=1.1e+02 Score=17.69 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy6738 55 DKCNDVIKWL 64 (130)
Q Consensus 55 ~~l~~~~~wL 64 (130)
..++++..||
T Consensus 9 ~~l~el~~WL 18 (118)
T 3uul_A 9 IALEEVLTWL 18 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.05 E-value=92 Score=16.30 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy6738 71 EKEEFEHKQKELEAICN 87 (130)
Q Consensus 71 ~~~~i~~~~~~L~~~~~ 87 (130)
+.+.++....+|+..+.
T Consensus 20 d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 20
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=22.76 E-value=86 Score=19.92 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhhcccCCHHHHHHHHHHHHHHHHHH
Q psy6738 19 ISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 64 (130)
Q Consensus 19 ~eakn~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL 64 (130)
++.+|-+.+-+..++..|.- +...|.+.++......-.++..-|
T Consensus 53 ~~~Rn~IhGPlg~lr~~m~~--l~~~Llp~dqk~A~~lak~l~~~L 96 (133)
T 3ls0_A 53 VDTQTYIHGPLGQLRRDMLG--LASSLLPKDQDKAKTLAKEVFGHL 96 (133)
T ss_dssp HHHHHHHHTTTTTHHHHHHH--HHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHH--HHHhcChhhhHHHHHHHHHHHHHH
Confidence 33334333333344444332 334555566555555555554444
No 21
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.58 E-value=19 Score=20.69 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=21.3
Q ss_pred HHhhccchhhcccCCHHHHHHHHHHHHHHHHHHhhC
Q psy6738 32 MKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN 67 (130)
Q Consensus 32 ~~~~l~~~~~~~~l~~~~~~~i~~~l~~~~~wL~~~ 67 (130)
+++.|.+ +.+-.+.+.+++|......+++-|...
T Consensus 12 lekilde--vtdgapdearerieklakdvkdeleeg 45 (101)
T 2lse_A 12 LEKILDE--VTDGAPDEARERIEKLAKDVKDELEEG 45 (101)
Confidence 3444443 445567777777877777777766654
No 22
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=20.33 E-value=2e+02 Score=22.49 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhccchhhcccCCHHHHHHH----HHHHHHHHHHHhhC
Q psy6738 23 NSLESYCFNMKSTVEDEKLKDKISDAERTQI----LDKCNDVIKWLDAN 67 (130)
Q Consensus 23 n~lE~~i~~~~~~l~~~~~~~~l~~~~~~~i----~~~l~~~~~wL~~~ 67 (130)
..|+.++..+..- .+.++..|+.++...+ ...++.++.||...
T Consensus 52 ~~l~~~l~~vs~p--~~~ygk~Lt~~e~~~~f~ps~~~v~~V~~wL~~~ 98 (552)
T 1t1e_A 52 DELEAHVERQAAL--APHARVHLEREAFAASHGASLDDFAEIRKFAEAH 98 (552)
T ss_dssp HHHHHHHHHHTTS--CTTSCCCCCHHHHHHHHSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--CCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4578888777553 2467889999998766 78899999999874
Done!