RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6738
(130 letters)
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 151 bits (383), Expect = 7e-49
Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 8/126 (6%)
Query: 5 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 64
+ + + LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 65 DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
D+NQ AEKEEFEH+QK+LE + NPII+KLYQ +GGAP GA P GA G GP
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPP--------GAAPGGAAGGAGGP 114
Query: 125 TIEEVD 130
TIEEVD
Sbjct: 115 TIEEVD 120
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 140 bits (355), Expect = 1e-44
Identities = 73/113 (64%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 18 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEH 77
V + LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 78 KQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEVD 130
+QKELE +CNPIITKLYQ +GG PGG PG G P GA GPTIEEVD
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSG-GASSGPTIEEVD 113
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 136 bits (343), Expect = 5e-43
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 6/117 (5%)
Query: 14 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 73
+SAKN+LESY FNMKS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 74 EFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEVD 130
EFEHK+KELE +CNPII+ LYQG+GG G GA G G+G GPTIEEVD
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK------GGSGSGPTIEEVD 113
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 145 bits (367), Expect = 7e-42
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 60
++ + A+D+ KN+LE Y + ++ +E+E SDAE+T++ N
Sbjct: 532 LIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKA 590
Query: 61 IKWL-DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGA 117
+WL D + K ++ K +EL ++ N I + A + A
Sbjct: 591 EEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMA 648
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 68.3 bits (168), Expect = 1e-14
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 37
MV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 518 MVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 61.1 bits (149), Expect = 3e-12
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 60
MV DAE D K ++ +N + + + VE+ DK+ ++T I +
Sbjct: 515 MVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTAL 572
Query: 61 IKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 95
L +K E K +EL + ++ Q
Sbjct: 573 ETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 56.1 bits (136), Expect = 8e-11
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 60
MV DAE D K + ++ +N + + + VE+ DK+ ++T I +
Sbjct: 127 MVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTAL 184
Query: 61 IKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 98
L +K E K +EL + ++ Q
Sbjct: 185 ETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 51.0 bits (123), Expect = 7e-09
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 60
M+ D+ Y +D K + + K ++ + +S AER I D +
Sbjct: 124 MIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHL 181
Query: 61 IKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 97
+ + + + E K ++ + S
Sbjct: 182 SEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 215
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 49.5 bits (119), Expect = 1e-08
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
MV++A++++ ED +Q+ + A+N LE
Sbjct: 127 MVHEAKQFEKEDGEQRERVQARNQLE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
MV +AEK+ +ED KA + ++N LE
Sbjct: 127 MVEEAEKFASEDASIKAKVESRNKLE 152
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 48.4 bits (116), Expect = 3e-08
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
M+NDA+K+ A+D+ QK + ++N LE
Sbjct: 127 MINDADKFAADDQAQKEKVESRNELE 152
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 39.5 bits (93), Expect = 6e-05
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 37
MV +AEKY ED ++K + A N E + ++ +E
Sbjct: 146 MVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.003
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 27/57 (47%)
Query: 71 EKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIE 127
EK+ K+L+A KLY A S AP T+E
Sbjct: 18 EKQAL----KKLQAS-----LKLY-----------------ADDS-APALAIKATME 47
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 34.2 bits (79), Expect = 0.004
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
M+ +AEK AED K+K ++ N E
Sbjct: 126 MIKEAEKNAAEDAKRKELVEVINQAE 151
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 34.5 bits (80), Expect = 0.006
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLE 26
M+ +AE+ D K+K +N +
Sbjct: 484 MIKEAEENAEADRKRKEAAELRNEAD 509
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 0.13
Identities = 11/86 (12%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 6 EKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE-----KLKDKISDAERTQILDKCNDV 60
+K K E + LE+ ++ ++++ L +K+++ E + +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE-ITYSTETEKL 965
Query: 61 IKWLDANQLAEKE--EFEHKQKELEA 84
++ +++E+E ++ L+
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQE 991
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.24
Identities = 8/86 (9%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 1 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILD----K 56
+ + E + E+Q+ + ++ + ++ + + + + + +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDA------------ASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 57 CNDVIKWLDANQLAEKEEFEHKQKEL 82
V K N++A+K ++ ++
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPDADI 153
Score = 28.2 bits (62), Expect = 0.75
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 6 EKYKAEDEKQKAVI--SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVI 61
++ A + + AK LE + VE K+ ++I+D Q D D+I
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD--ADII 154
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 29.2 bits (65), Expect = 0.32
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 95 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPT 125
+G+ A A AGAP PG G P
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPP 177
Score = 27.7 bits (61), Expect = 1.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
G G P G G P PP G P P
Sbjct: 180 GRGAPPPGMMGPPPGMRPPMGPPMGIPPG 208
Score = 26.9 bits (59), Expect = 1.7
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
GAP +P G PP G PG
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
Score = 26.9 bits (59), Expect = 1.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 95 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
GG P G GAPP G G PG
Sbjct: 166 TQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195
Score = 25.8 bits (56), Expect = 4.8
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPTI 126
G P G PP P GP I
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205
Score = 25.8 bits (56), Expect = 5.0
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
+ A GAP P G P G
Sbjct: 153 AAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Score = 25.4 bits (55), Expect = 5.5
Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 96 GSGGAPGGFP---GAPGAGAPPSGAPGAGPGP 124
G G P G G P P G P P P
Sbjct: 187 GMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218
Score = 25.0 bits (54), Expect = 7.9
Identities = 6/29 (20%), Positives = 7/29 (24%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
+ G P P G G P
Sbjct: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPP 185
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 28.0 bits (63), Expect = 0.76
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 96 GSGGAPGGFPGAPGA-------GAPPSGAPGA 120
G GG+ GG G G+ A + + G
Sbjct: 118 GGGGSGGGGSGGGGSELVMTQTPASLAVSLGQ 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.98
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 35/110 (31%)
Query: 26 ESYCFNMKSTVED------EKLKDKISDAERTQ-ILDKCNDVIKWLDANQLAEKEEFEHK 78
++Y V D E L + I + + + ++++WL+ +++
Sbjct: 178 QTY----HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--- 230
Query: 79 QKELEAI---CNPIITKLYQ---------GSGGAPG----GFPGAPGAGA 112
L +I C P+I + Q G PG GA G
Sbjct: 231 ---LLSIPISC-PLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 27.6 bits (61), Expect = 1.5
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 52 QILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNP--IITKLYQGSGGAPGGFPGAPG 109
Q++ + + LDA++ KEE + + + P ++T + F
Sbjct: 550 QVMKEYLTKVDKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYT 609
Query: 110 AGAPPSGAPGAGPG 123
A A PG G
Sbjct: 610 APAYGQPQPGFGYS 623
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics,
northeast structural genomics consortium (NESG), target
SGR46, PSI-2; NMR {Synechocystis SP}
Length = 116
Score = 26.5 bits (58), Expect = 1.7
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 42 KDKISDAERTQILDKCNDVIK-WLDANQLAEKEEFEHKQKE 81
K I++A+R +L++ +VI W D ++ Q +
Sbjct: 58 KHWIAEADRINVLNQATEVINFWQDLKNQNKQISMAEAQGK 98
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 27.2 bits (60), Expect = 1.9
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 91 TKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGP 122
+ Y G P G+P P GAPP GAP A P
Sbjct: 407 PQGYPPQGYPPQGYPPPP-QGAPPQGAPPAAP 437
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 27.1 bits (60), Expect = 2.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 86 CNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTI 126
C + + + GA G+ P G+P S P PG +
Sbjct: 40 CGRPVGRSDSETKGASEGW--CPYCGSPYSFLPQLNPGDIV 78
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 26.7 bits (60), Expect = 2.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 30 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
F K V+ ++ AER ++ +K + K
Sbjct: 246 FGTKFKVDSTAKLAQLEKAEREKMKNKIAKISK 278
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 26.7 bits (60), Expect = 2.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 30 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
F + V+ +I AE+ ++ +K ++K
Sbjct: 239 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILK 271
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 26.7 bits (60), Expect = 2.7
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 31 NMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
+ E+ +I E I C D+I+
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQ 272
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic
structural genomics, protein structure initiative, CESG,
plant protein; 2.10A {Arabidopsis thaliana} SCOP:
d.129.3.1 PDB: 2q3q_A
Length = 122
Score = 26.1 bits (57), Expect = 2.7
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 35 TVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 73
T EK+ I D I+D+ K LD L KE
Sbjct: 86 TFHFEKVHKDIDDPHS--IIDESVKYFKKLDEAILNFKE 122
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 26.8 bits (60), Expect = 2.7
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 31 NMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
+ K + + E + D + + +
Sbjct: 254 DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQ 285
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 26.7 bits (60), Expect = 2.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ + ++K+ AER I D+ +I+
Sbjct: 242 YKSAEEREKLVKAERKFIEDRVKKIIE 268
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 26.6 bits (59), Expect = 2.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 31 NMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
+E E+ ++I E Q+ C ++
Sbjct: 258 QTNIEIEKEEDWNRILQIEEEQVQLMCEQILA 289
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 26.3 bits (59), Expect = 3.1
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 30 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
N + V + I DAE + DK +
Sbjct: 242 DNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHH 274
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 26.3 bits (58), Expect = 3.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 76 EHKQKELEAICNPIITKLYQGSGGAPG-GFPGAPGAG 111
E + +A+ ++ + G G G PGAG
Sbjct: 32 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAG 68
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 26.3 bits (59), Expect = 3.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 30 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
N + VE + I DAE I +K V +
Sbjct: 255 DNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEE 287
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 26.3 bits (59), Expect = 3.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
V D + DKI ER +L+ C + K
Sbjct: 254 VNDYRQMDKILKEERAYLLNICKKIKK 280
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 26.3 bits (59), Expect = 3.7
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 30 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
F+ +ED + K E + + + +
Sbjct: 251 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKS 283
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 26.0 bits (58), Expect = 3.8
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 30 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
++ ++D + ++I E +L++ +I
Sbjct: 258 MGVQINIDDPEQLEQIRKREAGIVLERVKKIID 290
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 26.4 bits (57), Expect = 3.9
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 95 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPT 125
G G G G P G+ G +
Sbjct: 333 WNPGRPEPGSAGTWNPGRPEPGSAGTWNTGS 363
Score = 26.0 bits (56), Expect = 4.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAG 121
GS G+ P + G G +P G
Sbjct: 362 GSSGSSSFRPDSSGHGNIRPSSPDWG 387
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 26.0 bits (58), Expect = 3.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
V D D++ ER IL+ + K
Sbjct: 245 VSDYVQMDRVLREERAYILNLVKQIKK 271
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 26.0 bits (58), Expect = 4.0
Identities = 3/27 (11%), Positives = 6/27 (22%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ D + E + K
Sbjct: 256 ISDPSKIQDFLNQETNTFKQMVEKIKK 282
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 26.0 bits (58), Expect = 4.1
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 31 NMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
N +DK++ +ER + K +I
Sbjct: 248 NSGFFYSSADQRDKLAASERKFVDAKLKKIID 279
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 26.0 bits (58), Expect = 4.5
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
V + + E+ + + + +
Sbjct: 246 VTSVEDFKALQKYEKEKFEEMIRQIKE 272
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 25.8 bits (57), Expect = 4.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPG 123
G GG+ GG G G+ + +P
Sbjct: 147 GGGGSGGGGSGGGGSENVLTQSPAIMSA 174
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 26.0 bits (58), Expect = 4.7
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ D E + + VI
Sbjct: 210 ITSPGQMQLFLDQEEKMMREMAEKVIA 236
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 26.0 bits (58), Expect = 4.8
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ D + + E + D ++
Sbjct: 252 ITDPAKLMEFIEQEEKMLKDMVAEIKA 278
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 26.0 bits (57), Expect = 4.8
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 33 KSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAE-----KEEFEHKQKELEAICN 87
++ ++ + +I D L + E E +E+K+K AI N
Sbjct: 215 NEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITN 274
Query: 88 PIITKLYQG--SGGAPGG-FPGAPGAG 111
P+I + + GA G GA G G
Sbjct: 275 PMIQEAFDVATGAGAMAGKVSGAGGGG 301
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 25.6 bits (57), Expect = 4.9
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 31 NMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
K + D + E + K
Sbjct: 39 EAKVQISDPSKIQDFLNQETNTFKQMVEKIKK 70
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 25.8 bits (57), Expect = 4.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGP 122
G GG+ GG G G+ + APG
Sbjct: 134 GGGGSGGGGSGGGGSEIVLTQAPGTLS 160
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 25.6 bits (55), Expect = 5.0
Identities = 9/30 (30%), Positives = 9/30 (30%)
Query: 96 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPT 125
G G GG G P G G P
Sbjct: 37 GWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 66
Score = 25.2 bits (54), Expect = 8.1
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 97 SGGAPGGFPGAPGAGAPPSGAPGAGPGP 124
G+PGG P G G G G
Sbjct: 21 GQGSPGGNRYPPQGGGGWGQPHGGGWGQ 48
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 26.0 bits (58), Expect = 5.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ + K+ E+ + + +DV K
Sbjct: 289 ISSVEEYQKLQTYEQDKFKEMIDDVKK 315
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 25.6 bits (57), Expect = 5.2
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ D + D+I E ++ ++
Sbjct: 248 ITDPEKLDQIRQRESDITKERIQKILA 274
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 25.6 bits (57), Expect = 5.2
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 36 VEDEKLKDKISDAERTQILDKCNDVIK 62
+ D K D E I +K + ++
Sbjct: 266 INDPTQMQKFLDEEENLIKEKVDKILA 292
>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding
fold, collagen binding, platelet activa hemostasis,
plasma, structural protein-protein binding COMP; 2.80A
{Synthetic}
Length = 87
Score = 24.6 bits (54), Expect = 6.2
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 95 QGSGGAPG-----GFPGAPGAGAPPSGAPGAGPGP 124
G G PG G G PG PP P PGP
Sbjct: 4 PGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGP 38
Score = 24.2 bits (53), Expect = 9.7
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 95 QGSGGAPG--GFPGAPGAG-APPSGAPGAGPGP 124
G G PG GFPG PG P G PG PGP
Sbjct: 39 PGPRGQPGVMGFPGPPGPPXXGPPGPPGP-PGP 70
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 25.1 bits (55), Expect = 6.3
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 103 GFPGAPGAGA--PPSGAPGAGPGPTIEE 128
+PG PGAG P G GA GP
Sbjct: 2 AYPGHPGAGGGYYPGGYGGAPGGPAFPG 29
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 25.2 bits (56), Expect = 7.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 31 NMKSTVEDEKLKDKISDAERTQILDKCNDVIK 62
+ E+ +I E I C D+I+
Sbjct: 45 QTDIEITREEDFTRILQMEEEYIHQLCEDIIQ 76
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond,
electron transport, endopl reticulum, FAD, flavoprotein,
glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae}
PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Length = 388
Score = 25.0 bits (54), Expect = 9.0
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 16 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEF 75
KA+ + L + F E + D + T+I ++ + + + L K+EF
Sbjct: 241 KALWKIQPYLPEFSFADLVNKEIKNKMDNVISQLDTKIFNE---DLVFANDLSLTLKDEF 297
Query: 76 EHKQKELEAI 85
+ K + I
Sbjct: 298 RSRFKNVTKI 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.130 0.375
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,011,587
Number of extensions: 115427
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 175
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (23.7 bits)