RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6738
         (130 letters)



>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 84

 Score =  123 bits (311), Expect = 9e-39
 Identities = 58/83 (69%), Positives = 70/83 (84%)

Query: 21  AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 80
             + LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QK
Sbjct: 2   GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61

Query: 81  ELEAICNPIITKLYQGSGGAPGG 103
           ELE +CNPIITKLYQ +GG PGG
Sbjct: 62  ELEKVCNPIITKLYQSAGGMPGG 84


>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 65.5 bits (160), Expect = 1e-15
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 1  MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 60
          MV DAE     D K + ++  +N  +    + +  VE+    DK+   ++T I      +
Sbjct: 9  MVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTAL 66

Query: 61 IKWLDANQLAEKEEFEHKQKELEAICNPI 89
             L      +K   E K +EL  +   +
Sbjct: 67 ETALKGE---DKAAIEAKMQELAQVSQKL 92


>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
           {Escherichia coli [TaxId: 562]}
          Length = 112

 Score = 58.8 bits (142), Expect = 4e-13
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 1   MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 60
           M+ D+  Y  +D K + +   K        ++   +  +     +S AER  I D    +
Sbjct: 9   MIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQVIDDAAAHL 66

Query: 61  IKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 97
            +    +   + +  E   K ++        +    S
Sbjct: 67  SEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100


>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 159

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MVNDAEKYKAEDEKQKAVISAKNSLE 26
           MV +AEKYKAEDEKQ+  +S+KNSLE
Sbjct: 134 MVQEAEKYKAEDEKQRDKVSSKNSLE 159


>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 31.3 bits (71), Expect = 0.012
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 85  ICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEVD 130
           I   I++ ++  S  A  G   AP        AP A        +D
Sbjct: 3   IFGKIMSAIFGDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPSID 48


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 25.3 bits (55), Expect = 1.3
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 23 NSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL---DANQLAEKEEFEHKQ 79
          N L+   F ++  + + +  +K        IL K    I  +   +   ++E++    ++
Sbjct: 19 NELKRSFFALRDQIPELENNEKAPKVV---ILKKATAYILSVQAEEQKLISEEDLLRKRR 75

Query: 80 KELEA 84
          ++L+ 
Sbjct: 76 EQLKH 80


>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 442

 Score = 24.5 bits (52), Expect = 5.3
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 39 EKLKDKISDAERTQILDK---CNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 95
          + L + +  A    + ++    +D + W+D     +K EF   ++  E I N     +  
Sbjct: 19 DYLSEFVKAA-HHMLHERKGPGSDFLGWVDWPIRYDKNEFSRIKQAAERIRNHSDALVVI 77

Query: 96 GSGG 99
          G GG
Sbjct: 78 GIGG 81


>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 114

 Score = 23.5 bits (50), Expect = 7.6
 Identities = 6/35 (17%), Positives = 9/35 (25%)

Query: 50 RTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEA 84
          R Q   + N +  W+                 LE 
Sbjct: 7  RRQFAAQANAIGPWIQNKMEEIARSSIQITGALED 41


>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
           stearothermophilus, nca 1503 [TaxId: 1422]}
          Length = 319

 Score = 23.9 bits (51), Expect = 7.7
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 11/70 (15%)

Query: 42  KDKISDAERTQILDKC--NDVIKWLDANQLAEKEEFEHKQKELEAICNPI---------I 90
           K+K S  E  Q        DVI++L       KEE E  ++EL                +
Sbjct: 243 KEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEV 302

Query: 91  TKLYQGSGGA 100
           TKL  G    
Sbjct: 303 TKLVHGEEAL 312


>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase)
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 113

 Score = 23.1 bits (50), Expect = 8.8
 Identities = 4/27 (14%), Positives = 15/27 (55%)

Query: 71  EKEEFEHKQKELEAICNPIITKLYQGS 97
           ++++FE +++++  I   +   L+   
Sbjct: 76  DRKQFEARKRKMMEIAKKVGKGLHPDC 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 487,559
Number of extensions: 22115
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 17
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (22.7 bits)