BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6739
(56 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKED
Sbjct: 460 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKED 514
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKED
Sbjct: 460 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKED 514
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
Length = 543
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKED
Sbjct: 460 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKED 514
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
pdb|7HSC|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
Length = 159
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKED
Sbjct: 76 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKED 130
>pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans.
pdb|3DOB|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans
Length = 152
Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 50/55 (90%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
EL+ IPPAPRGVPQIEVTF+IDANGILNV+A +KSTGK N+ITI N++GRL++ D
Sbjct: 69 ELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
>pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2
Protein From Saccharomyces Cerevisiae
Length = 152
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 47/55 (85%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTF +DANGIL V+A +K TGK ITITND+GRL++E+
Sbjct: 69 ELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D
Precursor From C.Elegans
Length = 152
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
++T IPPAPRGVPQIEVTF+ID NGIL+V+A +K TG +NK+TITND RLS ED
Sbjct: 69 DVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
>pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
pdb|3N8E|B Chain B, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
Length = 182
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L IPPAPRGVPQIEVTFDIDANGI++V+A +K TG+E +I I + G LSK+D
Sbjct: 90 LIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDD 142
>pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|C Chain C, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|D Chain D, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans
Length = 151
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKE 54
L IPPAPRGVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G LSK+
Sbjct: 70 LVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSS-GGLSKD 121
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
+LT IPPAPRGVPQIEVTFDIDANGI++V A + T KE ITI + G LS+E+
Sbjct: 427 QLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEE 480
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
Length = 219
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 71 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPO|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPP|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPP|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPQ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|E Chain E, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|F Chain F, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3QNJ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|3QNJ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|4E81|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
pdb|4E81|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
Length = 219
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 71 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 71 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak,
Minimized Average Structure
pdb|2BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 89 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 136
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 459 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 506
>pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak
Bound To The Peptide Nrllltg
Length = 135
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 87 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134
>pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In
The Apo Form
Length = 115
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 67 LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 114
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 459 LDGINPAPRGXPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 506
>pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu
Recognition Peptide Elppvkihc
Length = 227
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKE 54
L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G E
Sbjct: 68 LRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.131 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,564,393
Number of Sequences: 62578
Number of extensions: 46660
Number of successful extensions: 121
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 19
length of query: 56
length of database: 14,973,337
effective HSP length: 28
effective length of query: 28
effective length of database: 13,221,153
effective search space: 370192284
effective search space used: 370192284
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)