Query psy6739
Match_columns 56
No_of_seqs 112 out of 1059
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:12:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 99.7 4.7E-17 1E-21 102.7 5.7 56 1-56 490-545 (663)
2 KOG0102|consensus 99.5 6.7E-14 1.4E-18 90.1 3.9 54 2-56 479-532 (640)
3 PTZ00186 heat shock 70 kDa pre 99.4 3.7E-13 8E-18 88.1 5.8 54 2-56 479-532 (657)
4 KOG0101|consensus 99.4 2.5E-13 5.5E-18 88.3 4.8 56 1-56 464-519 (620)
5 PRK01433 hscA chaperone protei 99.3 3E-12 6.5E-17 83.1 6.0 54 2-56 434-487 (595)
6 PRK05183 hscA chaperone protei 99.2 1.9E-11 4E-16 79.6 5.3 54 2-56 456-509 (616)
7 TIGR01991 HscA Fe-S protein as 99.2 2.4E-11 5.2E-16 78.9 5.5 54 2-56 440-493 (599)
8 PRK13410 molecular chaperone D 99.2 3.7E-11 8E-16 78.9 5.3 54 2-56 454-507 (668)
9 COG0443 DnaK Molecular chapero 99.1 8.1E-11 1.8E-15 76.4 5.3 54 2-56 435-488 (579)
10 PRK13411 molecular chaperone D 99.1 2.4E-10 5.2E-15 74.9 5.5 54 2-56 454-507 (653)
11 PLN03184 chloroplast Hsp70; Pr 99.0 4.7E-10 1E-14 73.8 5.4 54 2-56 491-544 (673)
12 PTZ00400 DnaK-type molecular c 99.0 8.9E-10 1.9E-14 72.4 6.0 54 2-56 493-546 (663)
13 CHL00094 dnaK heat shock prote 99.0 7E-10 1.5E-14 72.3 4.9 54 2-56 454-507 (621)
14 PRK00290 dnaK molecular chaper 99.0 1.2E-09 2.5E-14 71.2 5.7 54 2-56 452-505 (627)
15 PTZ00009 heat shock 70 kDa pro 99.0 1.3E-09 2.9E-14 71.4 5.8 55 2-56 463-517 (653)
16 TIGR02350 prok_dnaK chaperone 99.0 2.6E-09 5.7E-14 69.1 6.2 54 2-56 450-503 (595)
17 PF00012 HSP70: Hsp70 protein; 98.4 7.6E-07 1.7E-11 57.3 5.6 53 2-55 456-508 (602)
18 KOG3591|consensus 93.0 0.27 5.8E-06 28.2 4.0 39 8-46 123-163 (173)
19 cd06480 ACD_HspB8_like Alpha-c 91.6 0.28 6.1E-06 25.4 2.7 24 8-31 66-89 (91)
20 cd06477 ACD_HspB3_Like Alpha c 89.6 0.54 1.2E-05 23.8 2.7 25 9-33 59-83 (83)
21 PF13103 TonB_2: TonB C termin 88.3 1.7 3.7E-05 21.3 4.0 19 10-28 23-41 (85)
22 PF07865 DUF1652: Protein of u 87.3 1.7 3.8E-05 21.5 3.6 25 15-39 15-39 (69)
23 cd06476 ACD_HspB2_like Alpha c 87.1 0.93 2E-05 22.9 2.6 23 9-31 59-81 (83)
24 COG1334 FlaG Uncharacterized f 85.4 1.6 3.5E-05 23.8 3.1 25 15-39 67-92 (120)
25 PF13670 PepSY_2: Peptidase pr 83.9 3.8 8.3E-05 20.3 4.8 36 17-53 46-81 (83)
26 cd06497 ACD_alphaA-crystallin_ 82.1 1.4 3E-05 22.3 1.9 16 16-31 69-84 (86)
27 cd06479 ACD_HspB7_like Alpha c 81.3 1.6 3.4E-05 22.0 1.9 18 15-32 63-80 (81)
28 cd06478 ACD_HspB4-5-6 Alpha-cr 81.2 1.5 3.2E-05 22.0 1.8 16 16-31 66-81 (83)
29 PF03646 FlaG: FlaG protein; 81.0 2.7 5.8E-05 21.9 2.8 26 14-39 54-80 (107)
30 PRK10050 curli assembly protei 79.5 8.8 0.00019 21.5 5.5 31 15-46 100-130 (138)
31 cd06498 ACD_alphaB-crystallin_ 79.1 1.7 3.8E-05 21.8 1.7 23 9-31 59-81 (84)
32 cd04030 C2C_KIAA1228 C2 domain 78.1 5.9 0.00013 20.6 3.6 21 9-31 1-22 (127)
33 PF11211 DUF2997: Protein of u 77.9 3.5 7.5E-05 18.9 2.3 17 17-33 1-17 (48)
34 PF10614 CsgF: Type VIII secre 76.6 11 0.00023 21.2 4.5 30 15-45 109-138 (142)
35 PF03544 TonB_C: Gram-negative 75.7 7.1 0.00015 18.5 3.3 15 14-28 17-31 (79)
36 PF03072 DUF237: MG032/MG096/M 75.4 4.4 9.6E-05 22.7 2.7 21 2-24 79-99 (137)
37 cd06481 ACD_HspB9_like Alpha c 73.5 3.3 7.1E-05 20.9 1.8 15 17-31 71-85 (87)
38 PRK08868 flagellar protein Fla 72.7 8 0.00017 21.8 3.3 25 15-39 89-114 (144)
39 PF05593 RHS_repeat: RHS Repea 71.8 6.2 0.00013 16.7 2.3 13 17-29 18-30 (38)
40 PRK08452 flagellar protein Fla 71.0 9.9 0.00022 20.8 3.4 25 15-39 71-96 (124)
41 PRK07738 flagellar protein Fla 69.6 11 0.00023 20.5 3.3 25 15-39 64-89 (117)
42 cd06526 metazoan_ACD Alpha-cry 66.3 5.9 0.00013 19.5 1.8 15 17-31 67-81 (83)
43 PF00011 HSP20: Hsp20/alpha cr 65.0 16 0.00036 18.3 3.6 20 17-37 72-91 (102)
44 TIGR01352 tonB_Cterm TonB fami 62.8 15 0.00033 17.1 3.9 15 14-28 11-25 (74)
45 cd08381 C2B_PI3K_class_II C2 d 62.7 17 0.00038 19.1 3.3 17 14-31 3-19 (122)
46 cd06475 ACD_HspB1_like Alpha c 60.9 7.7 0.00017 19.5 1.7 16 16-31 69-84 (86)
47 PF05691 Raffinose_syn: Raffin 58.4 9.8 0.00021 26.7 2.2 16 15-30 731-746 (747)
48 COG0810 TonB Periplasmic prote 55.6 15 0.00033 21.8 2.6 15 13-27 180-194 (244)
49 PF09264 Sial-lect-inser: Vibr 55.4 22 0.00048 21.0 3.1 21 11-31 55-75 (198)
50 COG2017 GalM Galactose mutarot 55.4 27 0.00059 21.5 3.7 25 12-37 131-155 (308)
51 COG0315 MoaC Molybdenum cofact 55.1 39 0.00084 19.4 4.4 26 13-38 82-107 (157)
52 PF08758 Cadherin_pro: Cadheri 55.0 28 0.00062 17.8 3.3 29 18-46 47-75 (90)
53 cd08388 C2A_Synaptotagmin-4-11 54.3 32 0.0007 18.2 3.7 18 14-31 4-22 (128)
54 cd00276 C2B_Synaptotagmin C2 d 53.1 32 0.00069 17.8 3.4 20 14-33 2-22 (134)
55 PF11975 Glyco_hydro_4C: Famil 53.0 14 0.00031 21.6 2.1 25 5-30 164-188 (232)
56 cd04026 C2_PKC_alpha_gamma C2 52.9 33 0.00071 17.9 3.7 18 14-32 3-20 (131)
57 cd08392 C2A_SLP-3 C2 domain fi 51.9 36 0.00079 18.1 3.7 19 14-32 3-22 (128)
58 PF01263 Aldose_epim: Aldose 1 49.6 45 0.00097 19.8 3.9 25 13-37 123-147 (300)
59 PF13581 HATPase_c_2: Histidin 48.9 37 0.00081 17.4 4.0 25 13-38 54-78 (125)
60 PRK10819 transport protein Ton 48.8 24 0.00052 21.3 2.6 15 14-28 182-196 (246)
61 PF11720 Inhibitor_I78: Peptid 48.7 20 0.00044 16.9 1.9 12 16-27 43-54 (60)
62 PRK10743 heat shock protein Ib 48.1 24 0.00052 19.4 2.4 11 23-33 113-123 (137)
63 cd08384 C2B_Rabphilin_Doc2 C2 47.7 41 0.00088 17.6 3.2 19 14-32 1-20 (133)
64 cd08408 C2B_Synaptotagmin-14_1 47.6 45 0.00098 18.0 3.4 19 13-31 2-21 (138)
65 cd08521 C2A_SLP C2 domain firs 47.4 40 0.00086 17.2 3.6 19 14-32 2-21 (123)
66 PF02768 DNA_pol3_beta_3: DNA 47.3 41 0.0009 17.4 3.3 24 17-41 37-60 (121)
67 PF13595 DUF4138: Domain of un 46.7 56 0.0012 19.8 4.0 30 18-47 209-238 (246)
68 PF02929 Bgal_small_N: Beta ga 46.5 36 0.00078 20.7 3.2 25 13-37 98-122 (276)
69 cd08385 C2A_Synaptotagmin-1-5- 46.2 43 0.00092 17.3 3.5 19 14-32 4-23 (124)
70 cd04029 C2A_SLP-4_5 C2 domain 46.2 45 0.00098 17.5 3.4 19 14-32 3-22 (125)
71 cd08387 C2A_Synaptotagmin-8 C2 46.0 43 0.00093 17.3 3.6 19 14-32 4-23 (124)
72 PF04314 DUF461: Protein of un 45.2 29 0.00063 18.1 2.4 20 9-29 90-109 (110)
73 COG0071 IbpA Molecular chapero 45.1 23 0.0005 19.3 2.1 13 23-35 122-134 (146)
74 cd08393 C2A_SLP-1_2 C2 domain 45.1 47 0.001 17.4 3.8 19 14-32 3-22 (125)
75 PF10955 DUF2757: Protein of u 45.1 32 0.0007 17.3 2.4 16 18-33 40-55 (76)
76 PF04225 OapA: Opacity-associa 44.6 27 0.00059 17.6 2.1 16 15-30 47-62 (85)
77 PF13127 DUF3955: Protein of u 44.4 15 0.00033 17.7 1.1 9 20-28 27-35 (63)
78 cd01419 MoaC_A MoaC family, ar 43.4 61 0.0013 18.3 4.3 25 12-37 67-91 (141)
79 COG2892 Uncharacterized protei 43.4 37 0.0008 17.4 2.4 22 14-35 34-56 (82)
80 cd01420 MoaC_PE MoaC family, p 43.3 61 0.0013 18.2 4.4 28 11-38 66-94 (140)
81 PF15534 Toxin_56: Putative to 43.2 40 0.00086 17.0 2.6 17 14-31 59-75 (79)
82 COG4585 Signal transduction hi 43.2 69 0.0015 19.8 4.1 28 12-40 297-324 (365)
83 PRK11597 heat shock chaperone 43.1 48 0.001 18.4 3.1 25 23-47 111-137 (142)
84 cd08680 C2_Kibra C2 domain fou 42.6 54 0.0012 17.4 3.4 18 14-31 2-20 (124)
85 PF09972 DUF2207: Predicted me 41.5 41 0.00088 21.4 3.0 18 13-30 5-22 (511)
86 TIGR01643 YD_repeat_2x YD repe 40.2 33 0.00072 14.3 3.9 14 16-29 17-30 (42)
87 cd06482 ACD_HspB10 Alpha cryst 39.9 32 0.0007 17.4 2.0 17 15-31 69-85 (87)
88 PF02294 7kD_DNA_binding: 7kD 39.9 21 0.00047 16.8 1.2 12 16-27 28-40 (62)
89 cd08390 C2A_Synaptotagmin-15-1 39.6 56 0.0012 16.7 3.8 19 14-32 2-21 (123)
90 TIGR02794 tolA_full TolA prote 38.1 81 0.0018 20.1 3.9 22 7-29 280-301 (346)
91 PF09244 DUF1964: Domain of un 38.1 51 0.0011 16.1 2.4 32 18-49 5-36 (68)
92 cd05197 GH4_glycoside_hydrolas 38.0 44 0.00095 21.8 2.7 25 5-30 341-365 (425)
93 PF13750 Big_3_3: Bacterial Ig 37.6 72 0.0016 17.9 3.3 30 22-51 122-152 (158)
94 PF15417 DUF4624: Domain of un 37.5 37 0.00081 18.6 2.0 17 14-30 50-67 (132)
95 cd08685 C2_RGS-like C2 domain 37.2 65 0.0014 16.8 3.5 18 14-32 2-19 (119)
96 PF15043 CNRIP1: CB1 cannabino 37.2 82 0.0018 18.2 3.5 29 3-31 89-118 (161)
97 PF06903 VirK: VirK protein; 37.2 66 0.0014 17.0 2.9 18 17-34 77-94 (100)
98 PF02144 Rad1: Repair protein 37.1 34 0.00074 20.8 2.1 16 15-30 257-272 (275)
99 COG3061 OapA Cell envelope opa 37.0 1E+02 0.0022 18.9 5.0 27 8-37 200-226 (242)
100 cd08405 C2B_Synaptotagmin-7 C2 36.9 67 0.0015 16.9 3.6 19 14-32 3-22 (136)
101 PF08772 NOB1_Zn_bind: Nin one 36.7 15 0.00033 18.3 0.4 18 14-31 35-52 (73)
102 cd04035 C2A_Rabphilin_Doc2 C2 36.4 65 0.0014 16.6 3.5 19 14-32 3-22 (123)
103 PF15283 DUF4595: Domain of un 35.7 89 0.0019 17.9 4.4 15 14-28 71-85 (197)
104 PF10296 DUF2404: Putative int 34.8 66 0.0014 16.1 3.9 25 8-32 64-88 (91)
105 cd04031 C2A_RIM1alpha C2 domai 34.1 71 0.0015 16.3 3.5 19 14-32 4-23 (125)
106 cd06472 ACD_ScHsp26_like Alpha 33.8 58 0.0013 16.2 2.4 17 17-33 25-41 (92)
107 cd00528 MoaC MoaC family. Memb 33.2 93 0.002 17.4 4.3 27 12-38 67-94 (136)
108 PLN02982 galactinol-raffinose 33.1 1E+02 0.0022 22.4 4.0 19 15-33 833-851 (865)
109 cd08677 C2A_Synaptotagmin-13 C 33.0 85 0.0018 16.9 3.8 20 14-33 2-22 (118)
110 cd05297 GH4_alpha_glucosidase_ 32.7 57 0.0012 21.1 2.6 25 5-30 338-362 (423)
111 PF04398 DUF538: Protein of un 32.6 73 0.0016 16.9 2.7 24 4-31 10-36 (110)
112 cd05296 GH4_P_beta_glucosidase 32.5 61 0.0013 21.1 2.7 25 5-30 330-354 (419)
113 PLN02711 Probable galactinol-- 32.5 1.1E+02 0.0023 22.0 4.0 29 15-44 747-775 (777)
114 cd06464 ACD_sHsps-like Alpha-c 32.5 30 0.00065 16.4 1.1 14 17-31 73-86 (88)
115 cd08402 C2B_Synaptotagmin-1 C2 32.2 83 0.0018 16.5 3.5 19 14-32 3-22 (136)
116 PF12014 DUF3506: Domain of un 31.8 52 0.0011 18.4 2.0 27 1-31 69-98 (134)
117 PF01967 MoaC: MoaC family; I 31.2 71 0.0015 17.8 2.5 23 13-35 68-91 (136)
118 PF09912 DUF2141: Uncharacteri 31.1 65 0.0014 17.0 2.3 20 9-28 51-70 (112)
119 cd08389 C2A_Synaptotagmin-14_1 30.6 88 0.0019 16.3 3.5 19 14-32 4-23 (124)
120 PRK11055 galM galactose-1-epim 30.5 1E+02 0.0023 19.4 3.5 24 11-34 134-157 (342)
121 PRK15076 alpha-galactosidase; 29.7 70 0.0015 20.9 2.7 26 5-31 335-360 (431)
122 PF15091 DUF4554: Domain of un 29.5 52 0.0011 21.7 2.0 20 13-32 19-38 (458)
123 cd08410 C2B_Synaptotagmin-17 C 29.5 96 0.0021 16.4 3.7 19 14-32 2-21 (135)
124 KOG3194|consensus 29.1 62 0.0014 20.2 2.2 20 15-34 236-255 (279)
125 PF12930 DUF3836: Family of un 28.9 65 0.0014 17.7 2.2 19 13-31 60-78 (132)
126 PF04205 FMN_bind: FMN-binding 28.7 75 0.0016 15.2 2.2 20 14-33 5-25 (81)
127 PF14601 TFX_C: DNA_binding pr 28.7 79 0.0017 16.1 2.3 17 14-30 68-84 (84)
128 cd04009 C2B_Munc13-like C2 dom 28.5 99 0.0021 16.3 3.8 18 14-31 4-22 (133)
129 cd06471 ACD_LpsHSP_like Group 27.9 43 0.00093 16.6 1.3 9 23-31 83-91 (93)
130 cd08403 C2B_Synaptotagmin-3-5- 27.6 1E+02 0.0022 16.1 3.5 20 14-33 2-22 (134)
131 PF03633 Glyco_hydro_65C: Glyc 27.5 71 0.0015 14.3 2.1 25 6-31 1-25 (54)
132 PF11604 CusF_Ec: Copper bindi 27.5 84 0.0018 15.1 3.0 15 15-29 49-63 (70)
133 TIGR00581 moaC molybdenum cofa 27.0 1.3E+02 0.0028 17.1 4.1 21 12-33 78-98 (147)
134 COG0450 AhpC Peroxiredoxin [Po 27.0 1.5E+02 0.0031 17.7 4.2 26 14-39 123-149 (194)
135 PF11359 gpUL132: Glycoprotein 26.8 87 0.0019 19.0 2.5 29 19-47 157-185 (235)
136 COG1225 Bcp Peroxiredoxin [Pos 26.8 61 0.0013 18.4 1.8 16 14-29 119-134 (157)
137 PF11739 DctA-YdbH: Dicarboxyl 26.6 1.4E+02 0.003 17.3 3.4 22 14-35 147-168 (207)
138 TIGR01953 NusA transcription t 26.4 1.8E+02 0.0039 18.6 4.2 27 23-49 214-240 (341)
139 PF08212 Lipocalin_2: Lipocali 26.2 1.2E+02 0.0025 16.3 4.3 34 10-43 22-56 (143)
140 PRK15172 putative aldose-1-epi 26.1 1.6E+02 0.0034 18.0 3.7 20 13-32 126-145 (300)
141 PF07661 MORN_2: MORN repeat v 25.9 47 0.001 11.6 2.7 14 18-31 5-18 (22)
142 cd01759 PLAT_PL PLAT/LH2 domai 25.4 1.2E+02 0.0026 16.2 4.5 32 13-45 3-36 (113)
143 TIGR02636 galM_Leloir galactos 25.0 1.8E+02 0.0039 18.1 3.9 23 11-33 129-151 (335)
144 PF02191 OLF: Olfactomedin-lik 24.9 1.7E+02 0.0037 17.7 4.3 26 14-39 123-148 (250)
145 PHA02762 hypothetical protein; 24.9 77 0.0017 15.1 1.7 15 14-28 27-41 (62)
146 PRK00095 mutL DNA mismatch rep 24.6 1.4E+02 0.0031 20.4 3.5 29 10-40 37-65 (617)
147 COG2847 Copper(I)-binding prot 24.4 1.5E+02 0.0032 16.9 3.8 28 7-35 115-142 (151)
148 TIGR01924 rsbW_low_gc serine-p 24.4 1.4E+02 0.003 16.5 4.5 25 14-39 66-90 (159)
149 PLN00194 aldose 1-epimerase; P 24.3 1.3E+02 0.0028 18.8 3.1 21 12-32 137-157 (337)
150 cd09024 Aldose_epim_lacX Aldos 23.9 1.7E+02 0.0036 17.7 3.5 20 13-32 107-127 (288)
151 PF02772 S-AdoMet_synt_M: S-ad 23.8 1E+02 0.0022 16.8 2.3 18 14-31 54-72 (120)
152 PF11353 DUF3153: Protein of u 23.5 1.6E+02 0.0036 17.1 3.3 25 9-33 11-35 (209)
153 PLN02355 probable galactinol-- 23.4 1.9E+02 0.0042 20.8 4.0 19 15-33 725-744 (758)
154 PRK12328 nusA transcription el 23.3 2.2E+02 0.0049 18.6 4.2 27 23-49 222-248 (374)
155 PRK09202 nusA transcription el 23.2 2.4E+02 0.0052 18.9 4.2 29 23-51 216-244 (470)
156 PF01863 DUF45: Protein of unk 23.1 1.3E+02 0.0028 16.9 2.8 17 17-33 3-19 (205)
157 TIGR03000 plancto_dom_1 Planct 23.0 1.2E+02 0.0026 15.3 2.6 21 6-26 34-55 (75)
158 PF11954 DUF3471: Domain of un 22.9 96 0.0021 15.5 2.0 14 15-28 66-79 (100)
159 PRK09510 tolA cell envelope in 22.8 1.3E+02 0.0028 19.7 2.9 22 6-28 320-341 (387)
160 PRK12343 putative molybdenum c 22.8 1.6E+02 0.0035 16.8 4.3 25 12-37 75-99 (151)
161 PRK14499 molybdenum cofactor b 22.8 2.1E+02 0.0046 18.1 4.3 26 12-37 80-106 (308)
162 cd08409 C2B_Synaptotagmin-15 C 22.7 1.4E+02 0.003 15.9 3.8 18 14-31 3-21 (137)
163 TIGR03027 pepcterm_export puta 22.5 72 0.0016 17.7 1.6 18 13-30 17-34 (165)
164 PRK13598 hisB imidazoleglycero 22.4 1.5E+02 0.0033 17.5 3.0 20 11-30 12-31 (193)
165 PF13211 DUF4019: Protein of u 22.3 1.1E+02 0.0025 15.9 2.3 19 3-22 61-79 (105)
166 PF09260 DUF1966: Domain of un 22.2 98 0.0021 15.8 2.0 15 18-32 58-72 (91)
167 PF04200 Lipoprotein_17: Lipop 21.4 1E+02 0.0022 14.6 1.9 27 14-40 44-73 (84)
168 PF03174 CHB_HEX_C: Chitobiase 21.4 75 0.0016 15.2 1.4 17 19-35 49-65 (75)
169 PRK14500 putative bifunctional 21.3 2.3E+02 0.005 18.0 4.4 27 12-38 81-110 (346)
170 cd09019 galactose_mutarotase_l 21.3 1.8E+02 0.0039 17.9 3.3 21 12-32 125-145 (326)
171 PF14564 Membrane_bind: Membra 21.2 1.3E+02 0.0027 16.1 2.3 16 16-31 70-86 (110)
172 cd08406 C2B_Synaptotagmin-12 C 21.2 1.5E+02 0.0034 15.9 3.4 18 14-31 3-21 (136)
173 KOG0104|consensus 21.0 1.1E+02 0.0024 22.2 2.5 18 14-31 512-529 (902)
174 cd01081 Aldose_epim aldose 1-e 20.8 1.9E+02 0.0041 16.8 3.8 13 13-25 113-125 (284)
175 PF04014 Antitoxin-MazE: Antid 20.5 99 0.0021 13.4 2.3 16 16-31 26-41 (47)
176 cd04028 C2B_RIM1alpha C2 domai 20.5 1.7E+02 0.0037 16.1 3.5 17 14-31 19-35 (146)
177 cd06470 ACD_IbpA-B_like Alpha- 20.4 70 0.0015 15.9 1.2 9 23-31 80-88 (90)
178 cd07914 IGPD Imidazoleglycerol 20.4 1.5E+02 0.0032 17.5 2.6 20 11-30 8-27 (190)
179 KOG4824|consensus 20.4 2.2E+02 0.0047 17.3 4.9 27 17-43 71-99 (224)
180 COG4814 Uncharacterized protei 20.4 2.4E+02 0.0052 17.8 3.8 28 16-43 78-105 (288)
181 PF10297 Hap4_Hap_bind: Minima 20.3 60 0.0013 11.7 0.7 6 5-10 7-12 (17)
182 PF07773 DUF1619: Protein of u 20.2 2.2E+02 0.0047 17.3 3.4 19 13-31 229-247 (294)
183 cd08407 C2B_Synaptotagmin-13 C 20.0 1.7E+02 0.0037 15.9 3.3 18 14-31 3-21 (138)
No 1
>KOG0100|consensus
Probab=99.69 E-value=4.7e-17 Score=102.67 Aligned_cols=56 Identities=73% Similarity=1.147 Sum_probs=53.4
Q ss_pred CccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 1 ~l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
.|.||||+|+|.|+|+|+|++|.||+|+|+|.+..+|++..++|..+.+.|+.++|
T Consensus 490 dltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdI 545 (663)
T KOG0100|consen 490 DLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDI 545 (663)
T ss_pred cccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999875
No 2
>KOG0102|consensus
Probab=99.45 E-value=6.7e-14 Score=90.06 Aligned_cols=54 Identities=67% Similarity=1.002 Sum_probs=50.4
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.||||.|+|.|.|+|+|.+|.||+++|+|.+..+|++..+++... |.||++||
T Consensus 479 l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei 532 (640)
T KOG0102|consen 479 LQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEI 532 (640)
T ss_pred ecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHH
Confidence 6799999999999999999999999999999999999999999876 56998874
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.42 E-value=3.7e-13 Score=88.10 Aligned_cols=54 Identities=72% Similarity=1.047 Sum_probs=49.3
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.+|||.|+|.++|+|+|.||.||+|+|+|++..+|+...++|... ++|++++|
T Consensus 479 l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i 532 (657)
T PTZ00186 479 LVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQI 532 (657)
T ss_pred EcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHH
Confidence 6789999999999999999999999999999999999999999864 56998764
No 4
>KOG0101|consensus
Probab=99.42 E-value=2.5e-13 Score=88.31 Aligned_cols=56 Identities=89% Similarity=1.285 Sum_probs=53.1
Q ss_pred CccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 1 ~l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
+|.||||.|+|.+.|+|+|.+|.||+|.|+|.+..+|+...++|..+.+.||+++|
T Consensus 464 eL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~I 519 (620)
T KOG0101|consen 464 ELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEI 519 (620)
T ss_pred eecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhh
Confidence 47899999999999999999999999999999999999999999998999999875
No 5
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.34 E-value=3e-12 Score=83.13 Aligned_cols=54 Identities=37% Similarity=0.608 Sum_probs=48.8
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|+||.||+|+|+|.+..+|+...+.|... .+||++|+
T Consensus 434 l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei 487 (595)
T PRK01433 434 LKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEI 487 (595)
T ss_pred EcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHH
Confidence 6789999999989999999999999999999999999999999765 45998764
No 6
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.23 E-value=1.9e-11 Score=79.60 Aligned_cols=54 Identities=44% Similarity=0.735 Sum_probs=48.1
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|.||.||+|+|+|++..+|+...+.+... ..|++++|
T Consensus 456 i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i 509 (616)
T PRK05183 456 LRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEI 509 (616)
T ss_pred eCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHH
Confidence 6789999999989999999999999999999999999999988755 45887764
No 7
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.22 E-value=2.4e-11 Score=78.86 Aligned_cols=54 Identities=44% Similarity=0.692 Sum_probs=48.1
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|+||.||+|+|+|.+..+|+...+.+... ..|++++|
T Consensus 440 l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i 493 (599)
T TIGR01991 440 LRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEI 493 (599)
T ss_pred EcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHH
Confidence 6789999999999999999999999999999999999998888765 45887764
No 8
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.19 E-value=3.7e-11 Score=78.92 Aligned_cols=54 Identities=56% Similarity=1.001 Sum_probs=48.3
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|.||.||+|+|++.+..+|+...+.+... +.|+++||
T Consensus 454 l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei 507 (668)
T PRK13410 454 LSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEV 507 (668)
T ss_pred EeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHH
Confidence 6789999999999999999999999999999999999988888754 66988764
No 9
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.1e-11 Score=76.40 Aligned_cols=54 Identities=72% Similarity=1.052 Sum_probs=50.2
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
+.+|||.|+|.+.|+|+|.+|.||+++|++.+..+|+...+.|....+ |++++|
T Consensus 435 l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i 488 (579)
T COG0443 435 LDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEI 488 (579)
T ss_pred CCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHH
Confidence 678999999999999999999999999999999999999999998866 988764
No 10
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.09 E-value=2.4e-10 Score=74.89 Aligned_cols=54 Identities=63% Similarity=1.027 Sum_probs=47.7
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|.||.||+|+|+|.+..+|+...+.+... ..||++++
T Consensus 454 l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei 507 (653)
T PRK13411 454 LTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEI 507 (653)
T ss_pred EcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHH
Confidence 5689999999989999999999999999999999999988888754 55888764
No 11
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.04 E-value=4.7e-10 Score=73.80 Aligned_cols=54 Identities=65% Similarity=1.023 Sum_probs=47.7
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|.||.||+|+|++.+..+++...+.+... ..||++++
T Consensus 491 i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei 544 (673)
T PLN03184 491 LDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEV 544 (673)
T ss_pred EeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHH
Confidence 5689999999989999999999999999999999999999988754 55887764
No 12
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.02 E-value=8.9e-10 Score=72.39 Aligned_cols=54 Identities=67% Similarity=1.101 Sum_probs=47.6
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++||.|+|.++|+|+|.+|.||+|+|++.+..+|+...+.+... ..|+++++
T Consensus 493 i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei 546 (663)
T PTZ00400 493 LVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEI 546 (663)
T ss_pred EcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHH
Confidence 5689999999989999999999999999999999999988888764 45887764
No 13
>CHL00094 dnaK heat shock protein 70
Probab=99.00 E-value=7e-10 Score=72.28 Aligned_cols=54 Identities=69% Similarity=1.031 Sum_probs=47.3
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++|+.|+|.++|+|+|.||.||+|+|++.+..+|+...+.+... ..|+++++
T Consensus 454 i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i 507 (621)
T CHL00094 454 LDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEV 507 (621)
T ss_pred EeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHH
Confidence 5689999999989999999999999999999999999988888753 55887763
No 14
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.99 E-value=1.2e-09 Score=71.24 Aligned_cols=54 Identities=70% Similarity=1.036 Sum_probs=47.5
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++|+.|+|.++|+|+|.+|.||+|+|++.+..+|+...+.+... ..|+++++
T Consensus 452 i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i 505 (627)
T PRK00290 452 LTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEI 505 (627)
T ss_pred ECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHH
Confidence 5689999999989999999999999999999999999999988754 55887753
No 15
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=71.43 Aligned_cols=55 Identities=84% Similarity=1.200 Sum_probs=47.7
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++|+.|+|.++|+|+|.+|.||+|+|++.+..+++...+.+....+.|+++++
T Consensus 463 i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i 517 (653)
T PTZ00009 463 LDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADI 517 (653)
T ss_pred EcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHH
Confidence 5679999999888999999999999999999999999988888755566887653
No 16
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.95 E-value=2.6e-09 Score=69.14 Aligned_cols=54 Identities=72% Similarity=1.054 Sum_probs=47.4
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCcccC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~ei 56 (56)
|.++|+.|+|.++|+|+|.+|.||+|+|++.+..+|+...+.+... ..||++++
T Consensus 450 i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~ 503 (595)
T TIGR02350 450 LTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEI 503 (595)
T ss_pred ECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHH
Confidence 5678999999889999999999999999999999999988888754 55887763
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.42 E-value=7.6e-07 Score=57.28 Aligned_cols=53 Identities=53% Similarity=0.938 Sum_probs=44.6
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCccc
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~~e 55 (56)
|.++++.|+|.++|+|+|.+|.||+|+|++.+...+....+.+.... .+++++
T Consensus 456 i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~-~~~~~~ 508 (602)
T PF00012_consen 456 ISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKE-TLSKEE 508 (602)
T ss_dssp EES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSS-SSCHHH
T ss_pred ccccccccccccceeeEEeeeeeeehhhhhccccccccccccccccc-cccccc
Confidence 56788899999999999999999999999999999998888887653 366554
No 18
>KOG3591|consensus
Probab=93.05 E-value=0.27 Score=28.24 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCCCcCeEEEEEEeCCCcceEEEEEeCcCCc--eEEEEEEc
Q psy6739 8 APRGVPQIEVTFDIDANGILNVTAIEKSTGK--ENKITITN 46 (56)
Q Consensus 8 ~p~g~~~i~V~f~~d~nGil~V~a~~~~~~~--~~~~~i~~ 46 (56)
.|+|...=.|+-.++.+|+|+|+|.-..... .+.+.|..
T Consensus 123 LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 123 LPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred CCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 5777766889999999999999998776554 56666654
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=91.62 E-value=0.28 Score=25.40 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.1
Q ss_pred CCCCcCeEEEEEEeCCCcceEEEE
Q psy6739 8 APRGVPQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 8 ~p~g~~~i~V~f~~d~nGil~V~a 31 (56)
.|.+.....|+-.+..||+|+|.|
T Consensus 66 LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 66 LPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCCCchhEEEEeCCCCeEEEEc
Confidence 466666688999999999999987
No 20
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=89.64 E-value=0.54 Score=23.84 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCCcCeEEEEEEeCCCcceEEEEEe
Q psy6739 9 PRGVPQIEVTFDIDANGILNVTAIE 33 (56)
Q Consensus 9 p~g~~~i~V~f~~d~nGil~V~a~~ 33 (56)
|.+...=.|+-.+..||+|+|+|.+
T Consensus 59 P~~Vd~~~v~A~~~~dGvL~I~~~~ 83 (83)
T cd06477 59 PDGVEHKDLSAMLCHDGILVVETKD 83 (83)
T ss_pred CCCcchheEEEEEcCCCEEEEEecC
Confidence 4443334566667789999998853
No 21
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=88.26 E-value=1.7 Score=21.30 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=12.8
Q ss_pred CCcCeEEEEEEeCCCcceE
Q psy6739 10 RGVPQIEVTFDIDANGILN 28 (56)
Q Consensus 10 ~g~~~i~V~f~~d~nGil~ 28 (56)
.+...+.|+|.+|.||.+.
T Consensus 23 ~~~~~~~V~i~i~~dG~v~ 41 (85)
T PF13103_consen 23 SGGLSVTVRITIDPDGRVI 41 (85)
T ss_dssp -TT--EEEEEEE-TTSBEE
T ss_pred CCCcEEEEEEEECCCCCEE
Confidence 3345699999999999984
No 22
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=87.34 E-value=1.7 Score=21.47 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=23.1
Q ss_pred EEEEEEeCCCcceEEEEEeCcCCce
Q psy6739 15 IEVTFDIDANGILNVTAIEKSTGKE 39 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~~~~~~~~ 39 (56)
....++++.+|.|+|...+..+|..
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~ 39 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRV 39 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcE
Confidence 6788999999999999999999986
No 23
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=87.09 E-value=0.93 Score=22.87 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.2
Q ss_pred CCCcCeEEEEEEeCCCcceEEEE
Q psy6739 9 PRGVPQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 9 p~g~~~i~V~f~~d~nGil~V~a 31 (56)
|.+...-.|+-.+..||+|+|++
T Consensus 59 P~~vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06476 59 PMDVDPLLVRASLSHDGILCIQA 81 (83)
T ss_pred CCCCChhhEEEEecCCCEEEEEe
Confidence 44444466888888999999976
No 24
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=85.43 E-value=1.6 Score=23.83 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.7
Q ss_pred EEEEEEeCCC-cceEEEEEeCcCCce
Q psy6739 15 IEVTFDIDAN-GILNVTAIEKSTGKE 39 (56)
Q Consensus 15 i~V~f~~d~n-Gil~V~a~~~~~~~~ 39 (56)
-.+.|+||.. |.+.|++.+..||..
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeV 92 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEV 92 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcc
Confidence 3589999966 999999999999985
No 25
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=83.88 E-value=3.8 Score=20.28 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=26.4
Q ss_pred EEEEeCCCcceEEEEEeCcCCceEEEEEEcCCCCCCc
Q psy6739 17 VTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSK 53 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~~ls~ 53 (56)
..++.+.+|..+|++.+ ..|+..++.+....|...+
T Consensus 46 ~~ve~~~~g~yev~~~~-~dG~~~ev~vD~~tG~V~~ 81 (83)
T PF13670_consen 46 REVEFDDDGCYEVEARD-KDGKKVEVYVDPATGEVVK 81 (83)
T ss_pred EEEEEcCCCEEEEEEEE-CCCCEEEEEEcCCCCeEee
Confidence 45677778889998665 7788899988876555443
No 26
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=82.13 E-value=1.4 Score=22.27 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.9
Q ss_pred EEEEEeCCCcceEEEE
Q psy6739 16 EVTFDIDANGILNVTA 31 (56)
Q Consensus 16 ~V~f~~d~nGil~V~a 31 (56)
.|+-.++.||+|+|++
T Consensus 69 ~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 69 AITCSLSADGMLTFSG 84 (86)
T ss_pred HeEEEeCCCCEEEEEe
Confidence 3677788899999876
No 27
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=81.32 E-value=1.6 Score=22.00 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=13.5
Q ss_pred EEEEEEeCCCcceEEEEE
Q psy6739 15 IEVTFDIDANGILNVTAI 32 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~ 32 (56)
=.|+-.+..||+|+|++.
T Consensus 63 e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 63 TSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred HHeEEEecCCCEEEEEec
Confidence 345666689999999874
No 28
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=81.19 E-value=1.5 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=12.8
Q ss_pred EEEEEeCCCcceEEEE
Q psy6739 16 EVTFDIDANGILNVTA 31 (56)
Q Consensus 16 ~V~f~~d~nGil~V~a 31 (56)
.|+-.+..||+|+|++
T Consensus 66 ~i~A~~~~dGvL~I~~ 81 (83)
T cd06478 66 AITSSLSADGVLTISG 81 (83)
T ss_pred HeEEEECCCCEEEEEe
Confidence 4677788899999876
No 29
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=80.95 E-value=2.7 Score=21.87 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.6
Q ss_pred eEEEEEEeCCC-cceEEEEEeCcCCce
Q psy6739 14 QIEVTFDIDAN-GILNVTAIEKSTGKE 39 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~~~~~~~~ 39 (56)
...+.|.+|.+ |.+.|.+.|..||.-
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eV 80 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEV 80 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SE
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcE
Confidence 36699999977 889999999999986
No 30
>PRK10050 curli assembly protein CsgF; Provisional
Probab=79.47 E-value=8.8 Score=21.51 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=24.7
Q ss_pred EEEEEEeCCCcceEEEEEeCcCCceEEEEEEc
Q psy6739 15 IEVTFDIDANGILNVTAIEKSTGKENKITITN 46 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~~ 46 (56)
..|.| ++.+|-|.|..+|..+|....+.+..
T Consensus 100 ~~i~i-~~~~~~l~i~ItD~~TGe~T~I~V~g 130 (138)
T PRK10050 100 YIVDI-ANRDGQLQLNVTDRKTGQTSTIQVSG 130 (138)
T ss_pred EEEEE-EecCCcEEEEEEeCCCccEEEEEeCC
Confidence 34444 45689999999999999999888753
No 31
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=79.14 E-value=1.7 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=15.4
Q ss_pred CCCcCeEEEEEEeCCCcceEEEE
Q psy6739 9 PRGVPQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 9 p~g~~~i~V~f~~d~nGil~V~a 31 (56)
|.+...=.|+-+|..||+|+|++
T Consensus 59 P~~vd~~~i~A~~~~dGvL~I~l 81 (84)
T cd06498 59 PADVDPLTITSSLSPDGVLTVCG 81 (84)
T ss_pred CCCCChHHcEEEeCCCCEEEEEE
Confidence 33333344667788899999876
No 32
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=78.07 E-value=5.9 Score=20.60 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=16.6
Q ss_pred CCCcCeEEEEEEeCCC-cceEEEE
Q psy6739 9 PRGVPQIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 9 p~g~~~i~V~f~~d~n-Gil~V~a 31 (56)
|.| +|++.+.|+.+ +.|+|.+
T Consensus 1 ~~G--~l~~~l~y~~~~~~L~V~v 22 (127)
T cd04030 1 PLG--RIQLTIRYSSQRQKLIVTV 22 (127)
T ss_pred CCe--EEEEEEEEeCCCCEEEEEE
Confidence 456 58999999987 7788875
No 33
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=77.88 E-value=3.5 Score=18.92 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.2
Q ss_pred EEEEeCCCcceEEEEEe
Q psy6739 17 VTFDIDANGILNVTAIE 33 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~ 33 (56)
+.|.++.||.+++++.-
T Consensus 1 I~~~I~~dG~V~~~v~G 17 (48)
T PF11211_consen 1 IEFTIYPDGRVEEEVEG 17 (48)
T ss_pred CEEEECCCcEEEEEEEe
Confidence 46889999999988765
No 34
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=76.62 E-value=11 Score=21.21 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=23.6
Q ss_pred EEEEEEeCCCcceEEEEEeCcCCceEEEEEE
Q psy6739 15 IEVTFDIDANGILNVTAIEKSTGKENKITIT 45 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~~~~~~~~~~~~i~ 45 (56)
..|.+. +.+|-|.|..+|..+|....+.+.
T Consensus 109 f~I~i~-~~~g~l~v~I~D~~TGe~T~I~Vp 138 (142)
T PF10614_consen 109 FTIEIV-NSDGGLVVNITDKNTGEVTTIEVP 138 (142)
T ss_pred EEEEEE-eCCCeEEEEEEeCCCccEEEEEec
Confidence 334433 568889999999999999888875
No 35
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=75.67 E-value=7.1 Score=18.54 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=13.1
Q ss_pred eEEEEEEeCCCcceE
Q psy6739 14 QIEVTFDIDANGILN 28 (56)
Q Consensus 14 ~i~V~f~~d~nGil~ 28 (56)
.+.|.|.+|.||.++
T Consensus 17 ~v~v~~~I~~~G~v~ 31 (79)
T PF03544_consen 17 TVVVEFTIDPDGRVS 31 (79)
T ss_dssp EEEEEEEEETTTEEE
T ss_pred EEEEEEEEeCCCCEE
Confidence 588999999999876
No 36
>PF03072 DUF237: MG032/MG096/MG288 family 1; InterPro: IPR004306 This domain is found entirely in Mycoplasma pneumoniae proteins of unknown function. Another related domain (IPR004319 from INTERPRO) is found entirely in mycoplasmal proteins of the MG032/MG096/MG288 family and both domains often occur together.
Probab=75.41 E-value=4.4 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=16.9
Q ss_pred ccCCCCCCCCcCeEEEEEEeCCC
Q psy6739 2 LTSIPPAPRGVPQIEVTFDIDAN 24 (56)
Q Consensus 2 l~~ip~~p~g~~~i~V~f~~d~n 24 (56)
+.+||+.-+| +++|+|.+|.+
T Consensus 79 ~ggIPg~WkG--km~vk~~~DG~ 99 (137)
T PF03072_consen 79 RGGIPGSWKG--KMNVKFIFDGD 99 (137)
T ss_pred hCCCCCcccc--eEEEEEEEccc
Confidence 4689999999 58999988753
No 37
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=73.53 E-value=3.3 Score=20.93 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=11.4
Q ss_pred EEEEeCCCcceEEEE
Q psy6739 17 VTFDIDANGILNVTA 31 (56)
Q Consensus 17 V~f~~d~nGil~V~a 31 (56)
|+-.+..||+|+|++
T Consensus 71 i~A~~~~dGvL~I~~ 85 (87)
T cd06481 71 VTCSLSPSGHLHIRA 85 (87)
T ss_pred eEEEeCCCceEEEEc
Confidence 556667899998875
No 38
>PRK08868 flagellar protein FlaG; Provisional
Probab=72.70 E-value=8 Score=21.79 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEEEeCCC-cceEEEEEeCcCCce
Q psy6739 15 IEVTFDIDAN-GILNVTAIEKSTGKE 39 (56)
Q Consensus 15 i~V~f~~d~n-Gil~V~a~~~~~~~~ 39 (56)
..+.|.+|.+ |.+-|.+.|..||.-
T Consensus 89 ~~L~F~vdeetgr~VVkViD~~T~EV 114 (144)
T PRK08868 89 KGLSFRVDEESGRDVVTIYEASTGDI 114 (144)
T ss_pred CceEEEEecCCCCEEEEEEECCCCce
Confidence 5689999987 999999999999985
No 39
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=71.84 E-value=6.2 Score=16.73 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=10.6
Q ss_pred EEEEeCCCcceEE
Q psy6739 17 VTFDIDANGILNV 29 (56)
Q Consensus 17 V~f~~d~nGil~V 29 (56)
.+|.||..|.|.-
T Consensus 18 ~~y~YD~~g~l~~ 30 (38)
T PF05593_consen 18 TRYTYDAAGRLTS 30 (38)
T ss_pred EEEEECCCCCEEE
Confidence 5899999999754
No 40
>PRK08452 flagellar protein FlaG; Provisional
Probab=71.02 E-value=9.9 Score=20.82 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.7
Q ss_pred EEEEEEeCCC-cceEEEEEeCcCCce
Q psy6739 15 IEVTFDIDAN-GILNVTAIEKSTGKE 39 (56)
Q Consensus 15 i~V~f~~d~n-Gil~V~a~~~~~~~~ 39 (56)
..+.|.||.+ |.+.|.+.|..||.-
T Consensus 71 ~~L~F~~de~~~~~vVkVvD~~T~eV 96 (124)
T PRK08452 71 TNIRFGYNDKIKGLVVSVKEANGGKV 96 (124)
T ss_pred CceEEEEcCCCCcEEEEEEECCCCce
Confidence 4689999877 889999999999885
No 41
>PRK07738 flagellar protein FlaG; Provisional
Probab=69.60 E-value=11 Score=20.52 Aligned_cols=25 Identities=12% Similarity=0.322 Sum_probs=21.9
Q ss_pred EEEEEEeCCC-cceEEEEEeCcCCce
Q psy6739 15 IEVTFDIDAN-GILNVTAIEKSTGKE 39 (56)
Q Consensus 15 i~V~f~~d~n-Gil~V~a~~~~~~~~ 39 (56)
-.+.|++|.+ |.+-|.+.|..||.-
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EV 89 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEV 89 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCee
Confidence 4689999976 999999999999875
No 42
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.34 E-value=5.9 Score=19.53 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=10.1
Q ss_pred EEEEeCCCcceEEEE
Q psy6739 17 VTFDIDANGILNVTA 31 (56)
Q Consensus 17 V~f~~d~nGil~V~a 31 (56)
++-.+..||+|+|++
T Consensus 67 i~A~~~~~GvL~I~~ 81 (83)
T cd06526 67 VTSSLSSDGVLTIEA 81 (83)
T ss_pred eEEEeCCCcEEEEEe
Confidence 444555679998875
No 43
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.03 E-value=16 Score=18.29 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=13.6
Q ss_pred EEEEeCCCcceEEEEEeCcCC
Q psy6739 17 VTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~~~~~ 37 (56)
++-.+ .||+|+|++--....
T Consensus 72 i~a~~-~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 72 IKASY-ENGVLTITIPKKEEE 91 (102)
T ss_dssp -EEEE-TTSEEEEEEEBSSSC
T ss_pred EEEEe-cCCEEEEEEEccccc
Confidence 34445 899999998665544
No 44
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=62.83 E-value=15 Score=17.10 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.0
Q ss_pred eEEEEEEeCCCcceE
Q psy6739 14 QIEVTFDIDANGILN 28 (56)
Q Consensus 14 ~i~V~f~~d~nGil~ 28 (56)
.+.|.|.+|.+|.+.
T Consensus 11 ~v~v~~~i~~~G~v~ 25 (74)
T TIGR01352 11 TVVVRFTVDADGRVT 25 (74)
T ss_pred EEEEEEEECCCCCEE
Confidence 588999999999875
No 45
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=62.68 E-value=17 Score=19.08 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.2
Q ss_pred eEEEEEEeCCCcceEEEE
Q psy6739 14 QIEVTFDIDANGILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a 31 (56)
+|.+++.|+ .|.|+|.+
T Consensus 3 ~l~~~l~y~-~~~L~V~V 19 (122)
T cd08381 3 QVKLSISYK-NGTLFVMV 19 (122)
T ss_pred eEEEEEEEe-CCEEEEEE
Confidence 588899999 89999874
No 46
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=60.88 E-value=7.7 Score=19.51 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=11.6
Q ss_pred EEEEEeCCCcceEEEE
Q psy6739 16 EVTFDIDANGILNVTA 31 (56)
Q Consensus 16 ~V~f~~d~nGil~V~a 31 (56)
.|+=.+..||+|+|++
T Consensus 69 ~v~A~~~~dGvL~I~l 84 (86)
T cd06475 69 AVTSSLSPDGILTVEA 84 (86)
T ss_pred HcEEEECCCCeEEEEe
Confidence 4555567799998876
No 47
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=58.37 E-value=9.8 Score=26.71 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=14.2
Q ss_pred EEEEEEeCCCcceEEE
Q psy6739 15 IEVTFDIDANGILNVT 30 (56)
Q Consensus 15 i~V~f~~d~nGil~V~ 30 (56)
-+|.|+||.+|+|+|.
T Consensus 731 ~ev~F~yd~~gllt~~ 746 (747)
T PF05691_consen 731 AEVEFSYDEDGLLTVD 746 (747)
T ss_pred EEeeEEEcCCceEEEe
Confidence 5799999999999885
No 48
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=55.62 E-value=15 Score=21.77 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=12.6
Q ss_pred CeEEEEEEeCCCcce
Q psy6739 13 PQIEVTFDIDANGIL 27 (56)
Q Consensus 13 ~~i~V~f~~d~nGil 27 (56)
-++.|.|.+|.+|.+
T Consensus 180 G~V~V~f~i~~~G~v 194 (244)
T COG0810 180 GTVKVKFTIDPDGNV 194 (244)
T ss_pred ceEEEEEEECCCCCE
Confidence 368999999999963
No 49
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=55.43 E-value=22 Score=21.05 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=15.8
Q ss_pred CcCeEEEEEEeCCCcceEEEE
Q psy6739 11 GVPQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 11 g~~~i~V~f~~d~nGil~V~a 31 (56)
|..++.+.|++|.+|-|.+..
T Consensus 55 G~~r~l~~lsvn~sG~LvA~L 75 (198)
T PF09264_consen 55 GSKRYLPILSVNESGSLVAEL 75 (198)
T ss_dssp SSEEEEEEEEE-TTS-EEEEE
T ss_pred CceEEEEEEEEcCCCCEEEEE
Confidence 556799999999999987764
No 50
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=55.39 E-value=27 Score=21.52 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.2
Q ss_pred cCeEEEEEEeCCCcceEEEEEeCcCC
Q psy6739 12 VPQIEVTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~~~~~~ 37 (56)
...++|+|.++.++ |+|+.+....+
T Consensus 131 ~l~~~vtY~L~~~~-L~v~~~~~n~~ 155 (308)
T COG2017 131 NLEATVTYTLNEDG-LTVTYEVTNDG 155 (308)
T ss_pred eEEEEEEEEEcCCC-EEEEEEEEeCC
Confidence 45799999999999 88776655444
No 51
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=55.14 E-value=39 Score=19.39 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=19.3
Q ss_pred CeEEEEEEeCCCcceEEEEEeCcCCc
Q psy6739 13 PQIEVTFDIDANGILNVTAIEKSTGK 38 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a~~~~~~~ 38 (56)
..++|.|.++.+.-++|+++...+|+
T Consensus 82 t~Vdv~~~~~~~~~v~i~~~vkt~gk 107 (157)
T COG0315 82 TKVDVDFEVDEDDGVEITATVKTTGK 107 (157)
T ss_pred cceEEEEEECCCCcEEEEEEEEECCC
Confidence 46999999999856777776665554
No 52
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=54.97 E-value=28 Score=17.81 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=17.5
Q ss_pred EEEeCCCcceEEEEEeCcCCceEEEEEEc
Q psy6739 18 TFDIDANGILNVTAIEKSTGKENKITITN 46 (56)
Q Consensus 18 ~f~~d~nGil~V~a~~~~~~~~~~~~i~~ 46 (56)
.|.++.||.+.+.-.-.-.+....+.|..
T Consensus 47 dF~V~~DGsVy~~r~v~l~~~~~~F~V~a 75 (90)
T PF08758_consen 47 DFRVLEDGSVYAKRPVQLSSEQRSFTVHA 75 (90)
T ss_dssp EEEEETTTEEEEES--S-SSS-EEEEEEE
T ss_pred CEEEcCCCeEEEeeeEecCCCceEEEEEE
Confidence 68999999998765444445545555543
No 53
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=54.31 E-value=32 Score=18.20 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=14.3
Q ss_pred eEEEEEEeCCC-cceEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a 31 (56)
+|.+++.|+.+ +.|+|.+
T Consensus 4 ~l~~~l~y~~~~~~L~V~V 22 (128)
T cd08388 4 TLFFSLRYNSEKKALLVNI 22 (128)
T ss_pred EEEEEEEEECCCCEEEEEE
Confidence 58899999965 7788774
No 54
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=53.12 E-value=32 Score=17.81 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.4
Q ss_pred eEEEEEEeCC-CcceEEEEEe
Q psy6739 14 QIEVTFDIDA-NGILNVTAIE 33 (56)
Q Consensus 14 ~i~V~f~~d~-nGil~V~a~~ 33 (56)
+|.+.+.|+. +|.|+|.+..
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~ 22 (134)
T cd00276 2 ELLLSLSYLPTAERLTVVVLK 22 (134)
T ss_pred eEEEEEEeeCCCCEEEEEEEE
Confidence 5889999996 4889977543
No 55
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=53.04 E-value=14 Score=21.61 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=18.2
Q ss_pred CCCCCCCcCeEEEEEEeCCCcceEEE
Q psy6739 5 IPPAPRGVPQIEVTFDIDANGILNVT 30 (56)
Q Consensus 5 ip~~p~g~~~i~V~f~~d~nGil~V~ 30 (56)
|+..|.+.. |+|...+|.+|+-=+.
T Consensus 164 I~nLp~dav-VEvp~~v~~~Gi~P~~ 188 (232)
T PF11975_consen 164 IPNLPDDAV-VEVPCYVDGDGIHPVA 188 (232)
T ss_dssp STTS-TTSE-EEEEEEEETTEEEEB-
T ss_pred cCCCCCCcE-EEEEEEEcCCeeEecc
Confidence 566777765 9999999999986443
No 56
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=52.86 E-value=33 Score=17.91 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.3
Q ss_pred eEEEEEEeCCCcceEEEEE
Q psy6739 14 QIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a~ 32 (56)
+|.++|+|+. |.|+|...
T Consensus 3 ~~~~~~~~~~-~~l~v~i~ 20 (131)
T cd04026 3 RIYLKISVKD-NKLTVEVR 20 (131)
T ss_pred EEEEEEEECC-CEEEEEEE
Confidence 5888999988 88887754
No 57
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=51.86 E-value=36 Score=18.11 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.2
Q ss_pred eEEEEEEeCC-CcceEEEEE
Q psy6739 14 QIEVTFDIDA-NGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~-nGil~V~a~ 32 (56)
+|++++.|+. .+.|+|.+.
T Consensus 3 ~i~~sl~Y~~~~~~L~V~V~ 22 (128)
T cd08392 3 EIEFALHYNFRTSCLEITIK 22 (128)
T ss_pred EEEEEEEEeCCCCEEEEEEE
Confidence 5899999996 588888753
No 58
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=49.58 E-value=45 Score=19.77 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=17.5
Q ss_pred CeEEEEEEeCCCcceEEEEEeCcCC
Q psy6739 13 PQIEVTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a~~~~~~ 37 (56)
..++++|+++.++.|+++.+....+
T Consensus 123 ~~l~~~y~L~~~~~L~i~~~v~n~~ 147 (300)
T PF01263_consen 123 FRLRITYTLDENGKLTITYEVTNDG 147 (300)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eeeEEEEEECCCCeEEEEEEEEecC
Confidence 4689999999999655555444444
No 59
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=48.86 E-value=37 Score=17.38 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=19.9
Q ss_pred CeEEEEEEeCCCcceEEEEEeCcCCc
Q psy6739 13 PQIEVTFDIDANGILNVTAIEKSTGK 38 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a~~~~~~~ 38 (56)
..|.|++..+.++ |++++.|.+.+-
T Consensus 54 ~~v~v~~~~~~~~-l~i~v~D~G~~~ 78 (125)
T PF13581_consen 54 GPVDVRLEVDPDR-LRISVRDNGPGF 78 (125)
T ss_pred cEEEEEEEEcCCE-EEEEEEECCCCC
Confidence 3589999999888 788888877763
No 60
>PRK10819 transport protein TonB; Provisional
Probab=48.77 E-value=24 Score=21.35 Aligned_cols=15 Identities=40% Similarity=0.897 Sum_probs=12.6
Q ss_pred eEEEEEEeCCCcceE
Q psy6739 14 QIEVTFDIDANGILN 28 (56)
Q Consensus 14 ~i~V~f~~d~nGil~ 28 (56)
.+.|.|.+|.||.++
T Consensus 182 ~V~V~f~I~~~G~V~ 196 (246)
T PRK10819 182 QVKVKFDVDEDGRVD 196 (246)
T ss_pred EEEEEEEECCCCCEE
Confidence 588999999999863
No 61
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=48.73 E-value=20 Score=16.85 Aligned_cols=12 Identities=17% Similarity=0.769 Sum_probs=7.6
Q ss_pred EEEEEeCCCcce
Q psy6739 16 EVTFDIDANGIL 27 (56)
Q Consensus 16 ~V~f~~d~nGil 27 (56)
++.|.+|.+|.+
T Consensus 43 RLnv~~D~~g~I 54 (60)
T PF11720_consen 43 RLNVEVDDDGVI 54 (60)
T ss_pred cEEEEECCCCcE
Confidence 456666666665
No 62
>PRK10743 heat shock protein IbpA; Provisional
Probab=48.12 E-value=24 Score=19.43 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=8.7
Q ss_pred CCcceEEEEEe
Q psy6739 23 ANGILNVTAIE 33 (56)
Q Consensus 23 ~nGil~V~a~~ 33 (56)
.||+|+|+.--
T Consensus 113 ~dGVL~I~lPK 123 (137)
T PRK10743 113 VNGLLYIDLER 123 (137)
T ss_pred eCCEEEEEEeC
Confidence 58999998753
No 63
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=47.68 E-value=41 Score=17.61 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=14.5
Q ss_pred eEEEEEEeCC-CcceEEEEE
Q psy6739 14 QIEVTFDIDA-NGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~-nGil~V~a~ 32 (56)
+|.+++.|+. .|.|+|.+.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi 20 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGII 20 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEE
Confidence 3788999986 588887754
No 64
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=47.59 E-value=45 Score=17.98 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=15.7
Q ss_pred CeEEEEEEeCC-CcceEEEE
Q psy6739 13 PQIEVTFDIDA-NGILNVTA 31 (56)
Q Consensus 13 ~~i~V~f~~d~-nGil~V~a 31 (56)
++|.+.+.|+. .|.|.|.+
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~V 21 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEV 21 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEE
Confidence 46999999995 68899884
No 65
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=47.35 E-value=40 Score=17.23 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.0
Q ss_pred eEEEEEEeCC-CcceEEEEE
Q psy6739 14 QIEVTFDIDA-NGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~-nGil~V~a~ 32 (56)
+|.+.+.|+. .|.|+|.+.
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~ 21 (123)
T cd08521 2 EIEFSLSYNYKTGSLEVHIK 21 (123)
T ss_pred eEEEEEEEeCCCCEEEEEEE
Confidence 5889999985 588988754
No 66
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=47.33 E-value=41 Score=17.44 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=16.8
Q ss_pred EEEEeCCCcceEEEEEeCcCCceEE
Q psy6739 17 VTFDIDANGILNVTAIEKSTGKENK 41 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~~~~~~~~~ 41 (56)
|.|.++ ++.|++++...+.|...+
T Consensus 37 v~l~~~-~~~l~l~~~~~~~g~~~e 60 (121)
T PF02768_consen 37 VKLSFS-DNQLTLSSQSSEIGEAEE 60 (121)
T ss_dssp EEEEEE-TTEEEEEEEETTTEEEEE
T ss_pred EEEEEE-CCEEEEEEcCCCCceEEE
Confidence 344444 888999999887776543
No 67
>PF13595 DUF4138: Domain of unknown function (DUF4138)
Probab=46.67 E-value=56 Score=19.81 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=26.2
Q ss_pred EEEeCCCcceEEEEEeCcCCceEEEEEEcC
Q psy6739 18 TFDIDANGILNVTAIEKSTGKENKITITND 47 (56)
Q Consensus 18 ~f~~d~nGil~V~a~~~~~~~~~~~~i~~~ 47 (56)
.|++-.+-.|.|+..+...|+...+.++..
T Consensus 209 KFT~pd~K~L~Iel~EknGgR~~~l~I~~~ 238 (246)
T PF13595_consen 209 KFTIPDDKVLEIELYEKNGGRHITLKIENE 238 (246)
T ss_pred eeecCCCCEEEEEEEEcCCCceEEEEEChH
Confidence 577788899999999999999999998753
No 68
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=46.46 E-value=36 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=19.4
Q ss_pred CeEEEEEEeCCCcceEEEEEeCcCC
Q psy6739 13 PQIEVTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a~~~~~~ 37 (56)
....+++.++.||.|.|+..-...+
T Consensus 98 ~~~~~~y~i~~dG~i~v~~~~~~~~ 122 (276)
T PF02929_consen 98 FEVTITYTIYADGTIKVDMTFEPSG 122 (276)
T ss_dssp EEEEEEEEEETTSEEEEEEEEEEET
T ss_pred EEEEEEEEEcCCCEEEEEEEEEeCC
Confidence 3578899999999999887654444
No 69
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=46.18 E-value=43 Score=17.26 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.0
Q ss_pred eEEEEEEeCC-CcceEEEEE
Q psy6739 14 QIEVTFDIDA-NGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~-nGil~V~a~ 32 (56)
+|.+++.|+. +|.|+|.+.
T Consensus 4 ~l~~~l~y~~~~~~L~V~v~ 23 (124)
T cd08385 4 KLQFSLDYDFQSNQLTVGII 23 (124)
T ss_pred EEEEEEEEeCCCCEEEEEEE
Confidence 5899999984 588987754
No 70
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=46.18 E-value=45 Score=17.54 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=14.7
Q ss_pred eEEEEEEeC-CCcceEEEEE
Q psy6739 14 QIEVTFDID-ANGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d-~nGil~V~a~ 32 (56)
+|.+++.|+ ..|.|+|.+.
T Consensus 3 ~i~~sl~y~~~~~~L~V~Vi 22 (125)
T cd04029 3 EILFSLSYDYKTQSLNVHVK 22 (125)
T ss_pred EEEEEEEEECCCCeEEEEEE
Confidence 589999998 4478888753
No 71
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=46.01 E-value=43 Score=17.27 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=15.2
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
+|.+++.|+.. |.|.|.+.
T Consensus 4 ~l~~sl~y~~~~~~L~V~v~ 23 (124)
T cd08387 4 ELHFSLEYDKDMGILNVKLI 23 (124)
T ss_pred EEEEEEEECCCCCEEEEEEE
Confidence 68999999965 88888754
No 72
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=45.19 E-value=29 Score=18.12 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=11.4
Q ss_pred CCCcCeEEEEEEeCCCcceEE
Q psy6739 9 PRGVPQIEVTFDIDANGILNV 29 (56)
Q Consensus 9 p~g~~~i~V~f~~d~nGil~V 29 (56)
..|+ .+.++|..+..|.++|
T Consensus 90 ~~G~-~v~ltL~f~~gg~v~v 109 (110)
T PF04314_consen 90 KPGD-TVPLTLTFEDGGKVTV 109 (110)
T ss_dssp -TTE-EEEEEEEETTTEEEEE
T ss_pred CCCC-EEEEEEEECCCCEEEe
Confidence 3343 4666666666666655
No 73
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=45.10 E-value=23 Score=19.33 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=9.6
Q ss_pred CCcceEEEEEeCc
Q psy6739 23 ANGILNVTAIEKS 35 (56)
Q Consensus 23 ~nGil~V~a~~~~ 35 (56)
.||+|+|+..-..
T Consensus 122 ~nGvL~I~lpk~~ 134 (146)
T COG0071 122 KNGLLTVTLPKAE 134 (146)
T ss_pred eCcEEEEEEeccc
Confidence 5899999875433
No 74
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=45.09 E-value=47 Score=17.41 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.1
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
+|.+.+.|+.. +.|+|.+.
T Consensus 3 ~i~~sl~y~~~~~~L~V~vi 22 (125)
T cd08393 3 SVQFALDYDPKLRELHVHVI 22 (125)
T ss_pred EEEEEEEEECCCCEEEEEEE
Confidence 58899999977 77888753
No 75
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=45.09 E-value=32 Score=17.34 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.0
Q ss_pred EEEeCCCcceEEEEEe
Q psy6739 18 TFDIDANGILNVTAIE 33 (56)
Q Consensus 18 ~f~~d~nGil~V~a~~ 33 (56)
..+||.||-++|.+..
T Consensus 40 mI~~~~~G~i~V~~iC 55 (76)
T PF10955_consen 40 MISYDENGDIHVKVIC 55 (76)
T ss_pred heEEcCCCCEEEEEec
Confidence 3679999999998765
No 76
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=44.62 E-value=27 Score=17.58 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=10.3
Q ss_pred EEEEEEeCCCcceEEE
Q psy6739 15 IEVTFDIDANGILNVT 30 (56)
Q Consensus 15 i~V~f~~d~nGil~V~ 30 (56)
=.+.|.+|.+|.|.--
T Consensus 47 q~l~f~~d~~g~L~~L 62 (85)
T PF04225_consen 47 QTLEFQLDEDGQLTAL 62 (85)
T ss_dssp -EEEEEE-TTS-EEEE
T ss_pred CEEEEEECCCCCEEEE
Confidence 3589999999997543
No 77
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=44.41 E-value=15 Score=17.70 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=7.5
Q ss_pred EeCCCcceE
Q psy6739 20 DIDANGILN 28 (56)
Q Consensus 20 ~~d~nGil~ 28 (56)
.+|.||.|+
T Consensus 27 yVd~~G~L~ 35 (63)
T PF13127_consen 27 YVDEDGVLH 35 (63)
T ss_pred eECCCCeEe
Confidence 489999986
No 78
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=43.41 E-value=61 Score=18.26 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=16.6
Q ss_pred cCeEEEEEEeCCCcceEEEEEeCcCC
Q psy6739 12 VPQIEVTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~~~~~~ 37 (56)
...++|.|.++.++ +.+.++....+
T Consensus 67 l~~v~v~~~~~~~~-i~i~~~v~t~~ 91 (141)
T cd01419 67 ITGVDVDFEVEEDG-IEVRCTVKTTY 91 (141)
T ss_pred ceEEEEEEEEcCCE-EEEEEEEEEcC
Confidence 34689999999885 55655544433
No 79
>COG2892 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.37 E-value=37 Score=17.42 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=15.9
Q ss_pred eEEEEEEeCCCcc-eEEEEEeCc
Q psy6739 14 QIEVTFDIDANGI-LNVTAIEKS 35 (56)
Q Consensus 14 ~i~V~f~~d~nGi-l~V~a~~~~ 35 (56)
+-.+.|..|.|-+ |+|.|.|..
T Consensus 34 rSrv~l~~~~~rI~l~I~A~D~s 56 (82)
T COG2892 34 RSRVKLERDGNRIVLEIRAEDSS 56 (82)
T ss_pred cceeEEEecCCEEEEEEEecchH
Confidence 4678888886655 778887754
No 80
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=43.29 E-value=61 Score=18.21 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=19.6
Q ss_pred CcCeEEEEEEeCCC-cceEEEEEeCcCCc
Q psy6739 11 GVPQIEVTFDIDAN-GILNVTAIEKSTGK 38 (56)
Q Consensus 11 g~~~i~V~f~~d~n-Gil~V~a~~~~~~~ 38 (56)
....++|.|.++.+ +.++++++....++
T Consensus 66 ~l~~v~v~~~~~~~~~~i~i~~~v~~~~k 94 (140)
T cd01420 66 PLTGVDVDFELDEETSGVRIEATVRTTGR 94 (140)
T ss_pred cccEEEEEEEEcCCCCEEEEEEEEEEccC
Confidence 34569999999987 45777776655444
No 81
>PF15534 Toxin_56: Putative toxin 56
Probab=43.24 E-value=40 Score=17.04 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.8
Q ss_pred eEEEEEEeCCCcceEEEE
Q psy6739 14 QIEVTFDIDANGILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a 31 (56)
.++|||.. .||.+.++.
T Consensus 59 ~vtVt~~~-~dG~~~IS~ 75 (79)
T PF15534_consen 59 TVTVTYFF-KDGKVRISD 75 (79)
T ss_pred EEEEEEEe-eCCEEEeee
Confidence 48888887 888887754
No 82
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=43.23 E-value=69 Score=19.82 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=22.6
Q ss_pred cCeEEEEEEeCCCcceEEEEEeCcCCceE
Q psy6739 12 VPQIEVTFDIDANGILNVTAIEKSTGKEN 40 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~~~~~~~~~ 40 (56)
-..+.|++.++.++ |.+++.|.+.|-..
T Consensus 297 A~~v~V~l~~~~~~-l~l~V~DnG~Gf~~ 324 (365)
T COG4585 297 ATEVRVTLERTDDE-LRLEVIDNGVGFDP 324 (365)
T ss_pred CceEEEEEEEcCCE-EEEEEEECCcCCCc
Confidence 34699999999988 88888888777653
No 83
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=43.15 E-value=48 Score=18.44 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=16.3
Q ss_pred CCcceEEEEEeC--cCCceEEEEEEcC
Q psy6739 23 ANGILNVTAIEK--STGKENKITITND 47 (56)
Q Consensus 23 ~nGil~V~a~~~--~~~~~~~~~i~~~ 47 (56)
.||+|+|+.--. ...+.+.+.|...
T Consensus 111 ~nGVL~I~lPK~~~~~~~~rkI~I~~~ 137 (142)
T PRK11597 111 VNGLLHIDLIRNEPEAIAPQRIAISER 137 (142)
T ss_pred cCCEEEEEEeccCccccCCcEEEECCc
Confidence 689999998532 3344566777543
No 84
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=42.57 E-value=54 Score=17.45 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.0
Q ss_pred eEEEEEEeCCC-cceEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a 31 (56)
+|.+++.||.. |.|+|.+
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V 20 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISV 20 (124)
T ss_pred eEEEEEEECCCCCEEEEEE
Confidence 58999999975 7799885
No 85
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=41.55 E-value=41 Score=21.40 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.7
Q ss_pred CeEEEEEEeCCCcceEEE
Q psy6739 13 PQIEVTFDIDANGILNVT 30 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~ 30 (56)
.+++|+..++.||.++|+
T Consensus 5 ~~~~v~~~v~~dG~~~V~ 22 (511)
T PF09972_consen 5 DSYDVDATVQEDGSLDVT 22 (511)
T ss_pred eeeEEEEEECCCCcEEEE
Confidence 358899999999999887
No 86
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=40.21 E-value=33 Score=14.29 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.3
Q ss_pred EEEEEeCCCcceEE
Q psy6739 16 EVTFDIDANGILNV 29 (56)
Q Consensus 16 ~V~f~~d~nGil~V 29 (56)
..+|.||..|.|.-
T Consensus 17 ~~~~~YD~~Grl~~ 30 (42)
T TIGR01643 17 TTRYTYDAAGRLVE 30 (42)
T ss_pred EEEEEECCCCCEEE
Confidence 48899999999843
No 87
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=39.90 E-value=32 Score=17.44 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=12.2
Q ss_pred EEEEEEeCCCcceEEEE
Q psy6739 15 IEVTFDIDANGILNVTA 31 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a 31 (56)
=.|+-+|..+|+|++.+
T Consensus 69 d~i~A~~~~~~~l~i~~ 85 (87)
T cd06482 69 KDVTYSYGLGSVVKIET 85 (87)
T ss_pred HHcEEEEcCCCEEEEee
Confidence 34666777788888875
No 88
>PF02294 7kD_DNA_binding: 7kD DNA-binding domain; InterPro: IPR003212 This family contains members of the hyperthermophilic archaebacterium 7kDa DNA-binding/endoribonuclease P2 family. There are five 7kDa DNA-binding proteins, 7a-7e, found as monomers in the cell. Protein 7e shows the tightest DNA-binding ability.; GO: 0003677 DNA binding, 0004521 endoribonuclease activity; PDB: 1SSO_A 2CVR_A 1B4O_A 2XIW_B 1WTV_A 1WTQ_A 1BF4_A 1WVL_B 1WTR_A 1WTP_B ....
Probab=39.86 E-value=21 Score=16.84 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=8.6
Q ss_pred EEEEEeCC-Ccce
Q psy6739 16 EVTFDIDA-NGIL 27 (56)
Q Consensus 16 ~V~f~~d~-nGil 27 (56)
-|.|.||. ||.-
T Consensus 28 mvsftyddgngkt 40 (62)
T PF02294_consen 28 MVSFTYDDGNGKT 40 (62)
T ss_dssp EEEEEEECSSSSE
T ss_pred eEEEEEecCCCcc
Confidence 37899987 6653
No 89
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=39.57 E-value=56 Score=16.70 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=14.8
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
+|.+.+.|+.. +.|+|.+.
T Consensus 2 ~l~~~l~y~~~~~~L~V~v~ 21 (123)
T cd08390 2 RLWFSVQYDLEEEQLTVSLI 21 (123)
T ss_pred EEEEEEEECCCCCEEEEEEE
Confidence 58899999965 67887754
No 90
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=38.11 E-value=81 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCCCCcCeEEEEEEeCCCcceEE
Q psy6739 7 PAPRGVPQIEVTFDIDANGILNV 29 (56)
Q Consensus 7 ~~p~g~~~i~V~f~~d~nGil~V 29 (56)
+.-+|. .+.|.|.++.||.|.-
T Consensus 280 ~~~~g~-~v~V~I~L~pdG~V~~ 301 (346)
T TIGR02794 280 PSFRGK-TCRLRIRLAPDGTLLS 301 (346)
T ss_pred cccCCC-EEEEEEEECCCCCEEe
Confidence 333454 5899999999998643
No 91
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=38.08 E-value=51 Score=16.12 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=19.3
Q ss_pred EEEeCCCcceEEEEEeCcCCceEEEEEEcCCC
Q psy6739 18 TFDIDANGILNVTAIEKSTGKENKITITNDRG 49 (56)
Q Consensus 18 ~f~~d~nGil~V~a~~~~~~~~~~~~i~~~~~ 49 (56)
.|+|..||-..++-+=.....+..++++...|
T Consensus 5 ~FSy~~dgdtSitf~W~g~~t~atLtFePg~G 36 (68)
T PF09244_consen 5 EFSYEADGDTSITFTWTGATTSATLTFEPGRG 36 (68)
T ss_dssp EEEEEEETTTEEEEEEE-SS-EEEEEE-GGGC
T ss_pred eeeEecCCCcEEEEEEeccccEEEEEEccCcc
Confidence 57777777766666666666677777776433
No 92
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=37.97 E-value=44 Score=21.77 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=19.2
Q ss_pred CCCCCCCcCeEEEEEEeCCCcceEEE
Q psy6739 5 IPPAPRGVPQIEVTFDIDANGILNVT 30 (56)
Q Consensus 5 ip~~p~g~~~i~V~f~~d~nGil~V~ 30 (56)
|+..|.+.. |+|...+|.+|+--+.
T Consensus 341 I~nLp~d~v-VEvp~~v~~~Gi~P~~ 365 (425)
T cd05197 341 IANIDDDVV-VEVPCLVDKNGPHPIK 365 (425)
T ss_pred CCCCCCCCE-EEEeEEEcCCCceecc
Confidence 566777765 9999999999975443
No 93
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=37.58 E-value=72 Score=17.90 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=18.6
Q ss_pred CCCcceEEEEEeCcCCce-EEEEEEcCCCCC
Q psy6739 22 DANGILNVTAIEKSTGKE-NKITITNDRGRL 51 (56)
Q Consensus 22 d~nGil~V~a~~~~~~~~-~~~~i~~~~~~l 51 (56)
+..-.|+|.|.|.+-+.. +.+.|...+.+|
T Consensus 122 ~~~YtLtV~a~D~aGN~~~~si~F~y~P~~~ 152 (158)
T PF13750_consen 122 DDSYTLTVSATDKAGNQSTKSISFSYMPPNL 152 (158)
T ss_pred CCeEEEEEEEEecCCCEEEEEEEEEEeCCee
Confidence 444569999999765554 556665544433
No 94
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=37.53 E-value=37 Score=18.62 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=12.2
Q ss_pred eEEEEEEeCCC-cceEEE
Q psy6739 14 QIEVTFDIDAN-GILNVT 30 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~ 30 (56)
.-+|+|++|.+ |+++|.
T Consensus 50 ~aEv~f~mDGe~~iVEiK 67 (132)
T PF15417_consen 50 DAEVYFQMDGESGIVEIK 67 (132)
T ss_pred eeEEEEEEcCccceEEec
Confidence 35789999966 666664
No 95
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=37.24 E-value=65 Score=16.82 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.0
Q ss_pred eEEEEEEeCCCcceEEEEE
Q psy6739 14 QIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a~ 32 (56)
+|.++|.+ .+|.|+|.+.
T Consensus 2 ~l~l~~~~-~~~~L~V~Vi 19 (119)
T cd08685 2 QLKLSIEG-QNRKLTLHVL 19 (119)
T ss_pred EEEEEEEE-cCCEEEEEEE
Confidence 46777777 5788888753
No 96
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=37.18 E-value=82 Score=18.17 Aligned_cols=29 Identities=21% Similarity=0.538 Sum_probs=21.5
Q ss_pred cCCCCCCCCc-CeEEEEEEeCCCcceEEEE
Q psy6739 3 TSIPPAPRGV-PQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 3 ~~ip~~p~g~-~~i~V~f~~d~nGil~V~a 31 (56)
.|+++..+|+ ..|.|.+..+.-|.+.+-.
T Consensus 89 ~G~~~TKsG~Rq~i~i~~~f~~~g~~~~~~ 118 (161)
T PF15043_consen 89 EGVPPTKSGERQPIQISMQFNPGGTLETVW 118 (161)
T ss_pred CCCCcccCCccccEEEEEEecCcceEEEEE
Confidence 5788877776 2388999998888776553
No 97
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=37.17 E-value=66 Score=17.04 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.2
Q ss_pred EEEEeCCCcceEEEEEeC
Q psy6739 17 VTFDIDANGILNVTAIEK 34 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~~ 34 (56)
++|+++.||.++++..-.
T Consensus 77 ~rY~i~~dg~~~f~~~~~ 94 (100)
T PF06903_consen 77 IRYQIRPDGSASFTTTIL 94 (100)
T ss_pred EEEEEcCCCcEEEEEEEe
Confidence 788899999988877543
No 98
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=37.09 E-value=34 Score=20.77 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.8
Q ss_pred EEEEEEeCCCcceEEE
Q psy6739 15 IEVTFDIDANGILNVT 30 (56)
Q Consensus 15 i~V~f~~d~nGil~V~ 30 (56)
.+|.+.+|.+|+|.+.
T Consensus 257 sKv~ir~d~~GlLs~Q 272 (275)
T PF02144_consen 257 SKVSIRIDENGLLSLQ 272 (275)
T ss_dssp SEEEEEEESSS-EEEE
T ss_pred cEEEEEeCCCcEEEEE
Confidence 5789999999999875
No 99
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=36.99 E-value=1e+02 Score=18.91 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=20.2
Q ss_pred CCCCcCeEEEEEEeCCCcceEEEEEeCcCC
Q psy6739 8 APRGVPQIEVTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 8 ~p~g~~~i~V~f~~d~nGil~V~a~~~~~~ 37 (56)
..+|. .|+|++|.+|.++.-..+...+
T Consensus 200 lkaGq---~Vki~~naqG~Vt~L~le~~n~ 226 (242)
T COG3061 200 LKAGQ---KVKISLNAQGRVTELRLETGNN 226 (242)
T ss_pred ccCCC---EEEEEEcCccceEEEEeccCCc
Confidence 34554 4899999999998877766555
No 100
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=36.93 E-value=67 Score=16.89 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=14.8
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
++.+++.|+.. |.|+|.+.
T Consensus 3 ~l~~sl~y~~~~~~L~v~vi 22 (136)
T cd08405 3 ELLLSLCYNPTANRITVNII 22 (136)
T ss_pred EEEEEEEEcCCCCeEEEEEE
Confidence 58899999865 78887754
No 101
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=36.68 E-value=15 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=7.0
Q ss_pred eEEEEEEeCCCcceEEEE
Q psy6739 14 QIEVTFDIDANGILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a 31 (56)
-..|..++|.||.+.+..
T Consensus 35 L~rvsvsv~~~G~~~~~~ 52 (73)
T PF08772_consen 35 LKRVSVSVDEDGKIKLHL 52 (73)
T ss_dssp -EEEE-B--SS---B---
T ss_pred ceEEEEEECCCCCEEEEe
Confidence 378999999999887654
No 102
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=36.43 E-value=65 Score=16.56 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=14.7
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
+|.+.+.||.+ +.|+|.+.
T Consensus 3 ~~~~~l~y~~~~~~L~V~v~ 22 (123)
T cd04035 3 TLEFTLLYDPANSALHCTII 22 (123)
T ss_pred EEEEEEEEeCCCCEEEEEEE
Confidence 58899999976 77887643
No 103
>PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold
Probab=35.67 E-value=89 Score=17.93 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=11.3
Q ss_pred eEEEEEEeCCCcceE
Q psy6739 14 QIEVTFDIDANGILN 28 (56)
Q Consensus 14 ~i~V~f~~d~nGil~ 28 (56)
.-.-+|+||.+|.|.
T Consensus 71 ~~t~~FtYn~~~qL~ 85 (197)
T PF15283_consen 71 TDTYTFTYNADGQLT 85 (197)
T ss_pred EEEEEEEECCCCceE
Confidence 467788999777764
No 104
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=34.83 E-value=66 Score=16.14 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=16.3
Q ss_pred CCCCcCeEEEEEEeCCCcceEEEEE
Q psy6739 8 APRGVPQIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 8 ~p~g~~~i~V~f~~d~nGil~V~a~ 32 (56)
.+.|...+++.+.|+.+..+++++.
T Consensus 64 ~~~g~~~~~~dv~Y~G~~~l~l~t~ 88 (91)
T PF10296_consen 64 DPDGELWIEFDVSYSGGFSLTLETK 88 (91)
T ss_pred CCCCCEEEEEEEEEcCCeEEEEEEE
Confidence 4556556777777777666666654
No 105
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=34.12 E-value=71 Score=16.31 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.1
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
++.+++.|+.. |.|+|.+.
T Consensus 4 ~l~~~l~~~~~~~~L~V~vi 23 (125)
T cd04031 4 RIQIQLWYDKVTSQLIVTVL 23 (125)
T ss_pred EEEEEEEEeCCCCEEEEEEE
Confidence 58899999974 88987754
No 106
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=33.82 E-value=58 Score=16.15 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=11.7
Q ss_pred EEEEeCCCcceEEEEEe
Q psy6739 17 VTFDIDANGILNVTAIE 33 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~ 33 (56)
+.+.++.++.|+|++.-
T Consensus 25 i~i~v~~~~~L~I~g~~ 41 (92)
T cd06472 25 VKVEVEDGRVLRISGER 41 (92)
T ss_pred EEEEEeCCCEEEEEEEe
Confidence 44455656789999864
No 107
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=33.18 E-value=93 Score=17.39 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=18.1
Q ss_pred cCeEEEEEEeCCC-cceEEEEEeCcCCc
Q psy6739 12 VPQIEVTFDIDAN-GILNVTAIEKSTGK 38 (56)
Q Consensus 12 ~~~i~V~f~~d~n-Gil~V~a~~~~~~~ 38 (56)
...++|.|.++.+ +-+++.++....++
T Consensus 67 l~~v~v~~~~~~~~~~i~i~~~v~~~~~ 94 (136)
T cd00528 67 LTGVDVDFELDEDTSGVRIRATVRTTGK 94 (136)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEEEecC
Confidence 3468999999987 35766666544443
No 108
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=33.12 E-value=1e+02 Score=22.35 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.4
Q ss_pred EEEEEEeCCCcceEEEEEe
Q psy6739 15 IEVTFDIDANGILNVTAIE 33 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~~ 33 (56)
.+|.|.|+.+|+|+|...-
T Consensus 833 ~ev~F~y~~~g~l~~~lp~ 851 (865)
T PLN02982 833 KEVGFEWEEEGKLSFFVPW 851 (865)
T ss_pred eEeeeEECCCCeEEEEccC
Confidence 5899999999999998753
No 109
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=32.98 E-value=85 Score=16.87 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=15.3
Q ss_pred eEEEEEEeCCC-cceEEEEEe
Q psy6739 14 QIEVTFDIDAN-GILNVTAIE 33 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~~ 33 (56)
++..++.||.. |.|+|.+..
T Consensus 2 ~l~fsL~Y~~~~~~L~V~vik 22 (118)
T cd08677 2 KLHYSLSYDKQKAELHVNILE 22 (118)
T ss_pred eEEEEEEEcCcCCEEEEEEEE
Confidence 68888999955 889988543
No 110
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=32.68 E-value=57 Score=21.08 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=18.6
Q ss_pred CCCCCCCcCeEEEEEEeCCCcceEEE
Q psy6739 5 IPPAPRGVPQIEVTFDIDANGILNVT 30 (56)
Q Consensus 5 ip~~p~g~~~i~V~f~~d~nGil~V~ 30 (56)
|+..|.... ++|...+|.+|+--+.
T Consensus 338 I~~Lp~d~v-VEvp~~v~~~G~~p~~ 362 (423)
T cd05297 338 IPNLPDDVV-VEVPALVDRNGIHPEK 362 (423)
T ss_pred CCCCCCCcE-EEEeeEEcCCCceecc
Confidence 455676754 9999999999985443
No 111
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=32.63 E-value=73 Score=16.93 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=13.9
Q ss_pred CCCC--CCCCcCeEEEEEEeCCC-cceEEEE
Q psy6739 4 SIPP--APRGVPQIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 4 ~ip~--~p~g~~~i~V~f~~d~n-Gil~V~a 31 (56)
|+|+ .|.+. ..|.+|.+ |-++|.-
T Consensus 10 glP~GLLP~~v----~~y~l~~~tG~f~v~l 36 (110)
T PF04398_consen 10 GLPRGLLPLGV----TEYGLNRDTGFFWVKL 36 (110)
T ss_dssp S-TT-TTTSSS-----EEEE-TTT-SEEEE-
T ss_pred CCCCCcCCCCc----eEEEEecCCcEEEEEe
Confidence 4554 56663 58899988 9998874
No 112
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=32.51 E-value=61 Score=21.10 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=19.4
Q ss_pred CCCCCCCcCeEEEEEEeCCCcceEEE
Q psy6739 5 IPPAPRGVPQIEVTFDIDANGILNVT 30 (56)
Q Consensus 5 ip~~p~g~~~i~V~f~~d~nGil~V~ 30 (56)
||..|.... |+|...+|.+|+--+.
T Consensus 330 I~~Lp~d~v-VEvp~~v~~~G~~P~~ 354 (419)
T cd05296 330 IPGLPDDAV-VEVPCVVDADGAHPLP 354 (419)
T ss_pred CCCCCCCCE-EEEeEEEcCCCceecc
Confidence 556777765 9999999999986544
No 113
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=32.46 E-value=1.1e+02 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=19.9
Q ss_pred EEEEEEeCCCcceEEEEEeCcCCceEEEEE
Q psy6739 15 IEVTFDIDANGILNVTAIEKSTGKENKITI 44 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~~~~~~~~~~~~i 44 (56)
.+|.|.||. |+++|...-...+....+++
T Consensus 747 ~~~~f~y~~-g~~~~~~~~~~~~~~~~v~~ 775 (777)
T PLN02711 747 EEVEFGYED-CMVVVQVPWSGSSGLSLIEY 775 (777)
T ss_pred EEeeeEecC-CEEEEEecCCCcCCceeEEE
Confidence 589999998 99998876544443344443
No 114
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=32.45 E-value=30 Score=16.41 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=7.9
Q ss_pred EEEEeCCCcceEEEE
Q psy6739 17 VTFDIDANGILNVTA 31 (56)
Q Consensus 17 V~f~~d~nGil~V~a 31 (56)
++..++. |+|+|++
T Consensus 73 i~a~~~~-G~L~I~~ 86 (88)
T cd06464 73 IKASLEN-GVLTITL 86 (88)
T ss_pred cEEEEeC-CEEEEEE
Confidence 3333443 8887765
No 115
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=32.16 E-value=83 Score=16.52 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.5
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
++.+++.|+.+ |.|+|.+.
T Consensus 3 ~l~~~l~y~~~~~~l~V~Vi 22 (136)
T cd08402 3 DICFSLRYVPTAGKLTVVIL 22 (136)
T ss_pred EEEEEeEEcCCCCeEEEEEE
Confidence 58889999965 88887643
No 116
>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.
Probab=31.76 E-value=52 Score=18.39 Aligned_cols=27 Identities=44% Similarity=0.692 Sum_probs=17.3
Q ss_pred CccCCCCCCCCcCeEEEEEE---eCCCcceEEEE
Q psy6739 1 ELTSIPPAPRGVPQIEVTFD---IDANGILNVTA 31 (56)
Q Consensus 1 ~l~~ip~~p~g~~~i~V~f~---~d~nGil~V~a 31 (56)
+|+|-|..|+|+ |+|. +...|.+.+.-
T Consensus 69 KLTGDpNVPrGe----vtF~A~DiG~~~~i~~a~ 98 (134)
T PF12014_consen 69 KLTGDPNVPRGE----VTFRADDIGPGGRIRVAH 98 (134)
T ss_pred EecCCCCCcCcc----EEEEecccCCCccccccc
Confidence 477888899986 3443 44566666543
No 117
>PF01967 MoaC: MoaC family; InterPro: IPR002820 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry contains the molybdenum cofactor biosynthesis protein MoaC.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2EKN_B 1EKS_A 1EKR_A 3JQM_D 2IIH_A 3JQJ_I 2IDE_K 3JQK_A 2OHD_B 2EEY_A.
Probab=31.20 E-value=71 Score=17.82 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=16.2
Q ss_pred CeEEEEEEeCCCc-ceEEEEEeCc
Q psy6739 13 PQIEVTFDIDANG-ILNVTAIEKS 35 (56)
Q Consensus 13 ~~i~V~f~~d~nG-il~V~a~~~~ 35 (56)
..++|.|.++.++ .+.|+++...
T Consensus 68 ~~v~v~~~~~~~~~~v~v~~~v~t 91 (136)
T PF01967_consen 68 THVDVDFELDEDESSVEVRATVKT 91 (136)
T ss_dssp EEEEEEEEEETTETEEEEEEEEEE
T ss_pred cEEEEEEEEcCCCcEEEEEEEEEE
Confidence 4688999999875 4666665443
No 118
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=31.07 E-value=65 Score=16.96 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=11.2
Q ss_pred CCCcCeEEEEEEeCCCcceE
Q psy6739 9 PRGVPQIEVTFDIDANGILN 28 (56)
Q Consensus 9 p~g~~~i~V~f~~d~nGil~ 28 (56)
|.|...|.|--..|.||.|.
T Consensus 51 p~G~YAi~v~hD~N~NgklD 70 (112)
T PF09912_consen 51 PPGTYAIAVFHDENGNGKLD 70 (112)
T ss_pred CCccEEEEEEEeCCCCCcCC
Confidence 44555555555555666554
No 119
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=30.60 E-value=88 Score=16.34 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=14.7
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
+|.+++.|+.. +.|+|.+.
T Consensus 4 ~l~~sl~Y~~~~~~L~V~Vi 23 (124)
T cd08389 4 DLDVAFEYDPSARKLTVTVI 23 (124)
T ss_pred EEEEEEEECCCCCEEEEEEE
Confidence 58999999975 57888753
No 120
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=30.53 E-value=1e+02 Score=19.37 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=16.5
Q ss_pred CcCeEEEEEEeCCCcceEEEEEeC
Q psy6739 11 GVPQIEVTFDIDANGILNVTAIEK 34 (56)
Q Consensus 11 g~~~i~V~f~~d~nGil~V~a~~~ 34 (56)
|...++|+|+++.++.|+++.+..
T Consensus 134 g~l~~~vtY~L~~~~~l~i~~~a~ 157 (342)
T PRK11055 134 GNLGATVTYRLTDDNRVSITYRAT 157 (342)
T ss_pred eEEEEEEEEEEcCCCeEEEEEEEE
Confidence 345688999998776666665443
No 121
>PRK15076 alpha-galactosidase; Provisional
Probab=29.70 E-value=70 Score=20.87 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=19.7
Q ss_pred CCCCCCCcCeEEEEEEeCCCcceEEEE
Q psy6739 5 IPPAPRGVPQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 5 ip~~p~g~~~i~V~f~~d~nGil~V~a 31 (56)
||..|.... |+|...+|.+|+--+..
T Consensus 335 I~~Lp~d~v-VEvp~~v~~~G~~P~~~ 360 (431)
T PRK15076 335 IDNLPQGCC-VEVPCLVDRNGIQPTKV 360 (431)
T ss_pred CCCCCCCCE-EEEeEEEcCCcceeeec
Confidence 566777765 99999999999865443
No 122
>PF15091 DUF4554: Domain of unknown function (DUF4554)
Probab=29.45 E-value=52 Score=21.74 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=17.3
Q ss_pred CeEEEEEEeCCCcceEEEEE
Q psy6739 13 PQIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a~ 32 (56)
++|+..|++-.||+|+-+..
T Consensus 19 pkirf~Fsvkvngvls~eiF 38 (458)
T PF15091_consen 19 PKIRFNFSVKVNGVLSKEIF 38 (458)
T ss_pred cceEEEEEEEECcEeehhhh
Confidence 57999999999999987654
No 123
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=29.45 E-value=96 Score=16.42 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=14.6
Q ss_pred eEEEEEEeCCC-cceEEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTAI 32 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~ 32 (56)
+|.+.+.|+.+ |.|+|.+.
T Consensus 2 ~i~~~l~y~~~~~~L~V~vi 21 (135)
T cd08410 2 ELLLSLNYLPSAGRLNVDII 21 (135)
T ss_pred cEEEEEEECCCCCeEEEEEE
Confidence 48889999866 88888643
No 124
>KOG3194|consensus
Probab=29.08 E-value=62 Score=20.19 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.6
Q ss_pred EEEEEEeCCCcceEEEEEeC
Q psy6739 15 IEVTFDIDANGILNVTAIEK 34 (56)
Q Consensus 15 i~V~f~~d~nGil~V~a~~~ 34 (56)
-+|.|.+|.+|.|.+..-..
T Consensus 236 sKv~lR~DerGvLS~qimi~ 255 (279)
T KOG3194|consen 236 SKVLLRMDERGVLSVQIMIQ 255 (279)
T ss_pred heEEEEEcCCcEEEEEEEEe
Confidence 57899999999999886543
No 125
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=28.87 E-value=65 Score=17.71 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=15.2
Q ss_pred CeEEEEEEeCCCcceEEEE
Q psy6739 13 PQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a 31 (56)
+..+=.|.||.+|.|.-.-
T Consensus 60 ~~~KY~Y~YD~~grl~eK~ 78 (132)
T PF12930_consen 60 PHLKYNYKYDDNGRLTEKE 78 (132)
T ss_dssp EEEEEEEEEETTTTEEEEE
T ss_pred hheEEEEEECCCCCEeeee
Confidence 5677889999999987653
No 126
>PF04205 FMN_bind: FMN-binding domain; InterPro: IPR007329 This conserved region includes the FMN-binding site of the NqrC protein [] as well as the NosR and NirI regulatory proteins.; GO: 0010181 FMN binding, 0016020 membrane; PDB: 3LWX_A 2KZX_A 3DCZ_A 3O6U_D.
Probab=28.74 E-value=75 Score=15.15 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=12.7
Q ss_pred eEEEEEEeCCCcce-EEEEEe
Q psy6739 14 QIEVTFDIDANGIL-NVTAIE 33 (56)
Q Consensus 14 ~i~V~f~~d~nGil-~V~a~~ 33 (56)
.|.|.+.+|.||.+ .|....
T Consensus 5 ~i~v~v~i~~dg~I~~v~~~~ 25 (81)
T PF04205_consen 5 PITVTVTIDKDGKITDVKILE 25 (81)
T ss_dssp EEEEEEEEETTTEEEEEEEEE
T ss_pred eEEEEEEEeCCCEEEEEEEee
Confidence 47777888886664 455444
No 127
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=28.74 E-value=79 Score=16.13 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.0
Q ss_pred eEEEEEEeCCCcceEEE
Q psy6739 14 QIEVTFDIDANGILNVT 30 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~ 30 (56)
+=++...++.||.|.|.
T Consensus 68 ~~~~~I~i~~dG~l~V~ 84 (84)
T PF14601_consen 68 KEDFEIYITEDGELRVR 84 (84)
T ss_dssp SS-EEEEESSSSSEEE-
T ss_pred cccEEEEEcCCCcEEeC
Confidence 34577788999999874
No 128
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=28.53 E-value=99 Score=16.26 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=13.5
Q ss_pred eEEEEEEeCCC-cceEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a 31 (56)
+|.+++.|+.. +.|+|.+
T Consensus 4 ~l~~~l~y~~~~~~L~V~V 22 (133)
T cd04009 4 VLTVKAYYRASEQSLRVEI 22 (133)
T ss_pred EEEEEEEEcCCCCEEEEEE
Confidence 58899999974 6677654
No 129
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=27.88 E-value=43 Score=16.58 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=7.3
Q ss_pred CCcceEEEE
Q psy6739 23 ANGILNVTA 31 (56)
Q Consensus 23 ~nGil~V~a 31 (56)
.||+|+|++
T Consensus 83 ~dGvL~I~l 91 (93)
T cd06471 83 ENGVLKITL 91 (93)
T ss_pred ECCEEEEEE
Confidence 789998875
No 130
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=27.56 E-value=1e+02 Score=16.12 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=14.9
Q ss_pred eEEEEEEeCCC-cceEEEEEe
Q psy6739 14 QIEVTFDIDAN-GILNVTAIE 33 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a~~ 33 (56)
+|.+.+.|+.. |.|+|.+..
T Consensus 2 ~l~~~~~y~~~~~~L~V~v~~ 22 (134)
T cd08403 2 ELMFSLCYLPTAGRLTLTIIK 22 (134)
T ss_pred eEEEEEEEcCCCCEEEEEEEE
Confidence 47888888866 788887543
No 131
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=27.49 E-value=71 Score=14.27 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=9.3
Q ss_pred CCCCCCcCeEEEEEEeCCCcceEEEE
Q psy6739 6 PPAPRGVPQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 6 p~~p~g~~~i~V~f~~d~nGil~V~a 31 (56)
|..|+++..+..+|.|=.. .|.|++
T Consensus 1 P~LP~~w~~l~F~~~~rg~-~l~v~i 25 (54)
T PF03633_consen 1 PRLPKQWSSLSFRLRYRGH-WLEVEI 25 (54)
T ss_dssp ----TT-SEEEEEEEETTE-EEEEEE
T ss_pred CcCCCccCEeEEEEEECCE-EEEEEE
Confidence 3456676655444444322 244444
No 132
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=27.48 E-value=84 Score=15.10 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=6.5
Q ss_pred EEEEEEeCCCcceEE
Q psy6739 15 IEVTFDIDANGILNV 29 (56)
Q Consensus 15 i~V~f~~d~nGil~V 29 (56)
|..+|..+.+|...|
T Consensus 49 V~F~~~~~~~~~~~I 63 (70)
T PF11604_consen 49 VRFTFERTDDGSYVI 63 (70)
T ss_dssp EEEEEEEETTCEEEE
T ss_pred EEEEEEECCCCcEEE
Confidence 444444444443333
No 133
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=27.03 E-value=1.3e+02 Score=17.07 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=14.4
Q ss_pred cCeEEEEEEeCCCcceEEEEEe
Q psy6739 12 VPQIEVTFDIDANGILNVTAIE 33 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~~ 33 (56)
...++|.|.++.++ +.|.++.
T Consensus 78 l~~v~v~~~~~~~~-i~v~~~v 98 (147)
T TIGR00581 78 LSKVEVELTVREDR-VEIRATV 98 (147)
T ss_pred ceEEEEEEEEcCCE-EEEEEEE
Confidence 34699999999875 4454443
No 134
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=1.5e+02 Score=17.66 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.2
Q ss_pred eEEEEEEeCCCcceEEE-EEeCcCCce
Q psy6739 14 QIEVTFDIDANGILNVT-AIEKSTGKE 39 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~-a~~~~~~~~ 39 (56)
.++-+|-+|.+|++.-. +.+...|+.
T Consensus 123 a~R~~FIIDp~g~ir~~~v~~~~iGRn 149 (194)
T COG0450 123 ALRGTFIIDPDGVIRHILVNPLTIGRN 149 (194)
T ss_pred ceeEEEEECCCCeEEEEEEecCCCCcC
Confidence 59999999999998644 444445664
No 135
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=26.84 E-value=87 Score=19.05 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=24.6
Q ss_pred EEeCCCcceEEEEEeCcCCceEEEEEEcC
Q psy6739 19 FDIDANGILNVTAIEKSTGKENKITITND 47 (56)
Q Consensus 19 f~~d~nGil~V~a~~~~~~~~~~~~i~~~ 47 (56)
+-.+.+|-|..+......|+...+.|++.
T Consensus 157 iyf~k~gnldtsfvnpnyg~~spm~ies~ 185 (235)
T PF11359_consen 157 IYFDKDGNLDTSFVNPNYGRGSPMTIESH 185 (235)
T ss_pred EEEccCCCccceeeCCCCCCCCCceeecc
Confidence 44678899988999999999999999864
No 136
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=61 Score=18.44 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.5
Q ss_pred eEEEEEEeCCCcceEE
Q psy6739 14 QIEVTFDIDANGILNV 29 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V 29 (56)
..+.||-||.+|.+.-
T Consensus 119 ~~R~TfvId~dG~I~~ 134 (157)
T COG1225 119 IERSTFVIDPDGKIRY 134 (157)
T ss_pred ccceEEEECCCCeEEE
Confidence 4789999999999753
No 137
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=26.59 E-value=1.4e+02 Score=17.27 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.8
Q ss_pred eEEEEEEeCCCcceEEEEEeCc
Q psy6739 14 QIEVTFDIDANGILNVTAIEKS 35 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a~~~~ 35 (56)
...+++.|+.+|.|.+.++-..
T Consensus 147 ~l~~~i~~~~~G~l~l~~~l~G 168 (207)
T PF11739_consen 147 RLSSSIDYDPDGELTLGLRLKG 168 (207)
T ss_pred EEEEEeecCCCccEEEEEEEee
Confidence 4788999999999888876544
No 138
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=26.38 E-value=1.8e+02 Score=18.57 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=21.5
Q ss_pred CCcceEEEEEeCcCCceEEEEEEcCCC
Q psy6739 23 ANGILNVTAIEKSTGKENKITITNDRG 49 (56)
Q Consensus 23 ~nGil~V~a~~~~~~~~~~~~i~~~~~ 49 (56)
.||++++.+..+..|....+.+.++..
T Consensus 214 ~dG~VeI~~iaR~pG~RtKvAV~s~~~ 240 (341)
T TIGR01953 214 ADGIIEIKKIAREPGYRTKIAVESNDE 240 (341)
T ss_pred cCCeEEEEEEeeCCcceeEEEEEcCCC
Confidence 578888998888999998888766433
No 139
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=26.24 E-value=1.2e+02 Score=16.33 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCcCeEEEEEEeCCCcceEEEEEeC-cCCceEEEE
Q psy6739 10 RGVPQIEVTFDIDANGILNVTAIEK-STGKENKIT 43 (56)
Q Consensus 10 ~g~~~i~V~f~~d~nGil~V~a~~~-~~~~~~~~~ 43 (56)
++...+...|+...+|.+.|.-... .+|+...+.
T Consensus 22 ~~~~~~~a~Yt~~~dg~i~V~n~~~~~~g~~~~~~ 56 (143)
T PF08212_consen 22 RGCVCVTAEYTLRDDGTISVRNSCRRPDGKIKTIR 56 (143)
T ss_dssp TT-ECEEEEEEE-TTS-EEEEEEEEETTTCCCEEE
T ss_pred ceeeeeeeeEEEcCCCEEEEEEEEEcCCCCEEEEE
Confidence 4555688999999999988886655 556544443
No 140
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=26.12 E-value=1.6e+02 Score=18.02 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=13.0
Q ss_pred CeEEEEEEeCCCcceEEEEE
Q psy6739 13 PQIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a~ 32 (56)
..++++|+++.+..|+++.+
T Consensus 126 ~~~~v~y~L~~~~~L~i~~~ 145 (300)
T PRK15172 126 LASQVIYSLDAATGLSVEIA 145 (300)
T ss_pred EEEEEEEEEccCCeEEEEEE
Confidence 46888899986545554433
No 141
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=25.94 E-value=47 Score=11.63 Aligned_cols=14 Identities=21% Similarity=-0.052 Sum_probs=9.7
Q ss_pred EEEeCCCcceEEEE
Q psy6739 18 TFDIDANGILNVTA 31 (56)
Q Consensus 18 ~f~~d~nGil~V~a 31 (56)
...++.||.|....
T Consensus 5 ~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 5 WKFYYENGKLKSEG 18 (22)
T ss_pred EEEEeCCCCEEEEE
Confidence 34678888887654
No 142
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=25.42 E-value=1.2e+02 Score=16.20 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=20.5
Q ss_pred CeEEEEEEeC--CCcceEEEEEeCcCCceEEEEEE
Q psy6739 13 PQIEVTFDID--ANGILNVTAIEKSTGKENKITIT 45 (56)
Q Consensus 13 ~~i~V~f~~d--~nGil~V~a~~~~~~~~~~~~i~ 45 (56)
.+|.|+|.-. .+|.++|+.. ...|.+..+.+.
T Consensus 3 Yqv~V~~s~~~~~~g~~~vsL~-G~~g~s~~~~i~ 36 (113)
T cd01759 3 YKVSVTLSGKKKVTGTILVSLY-GNKGNTRQYEIF 36 (113)
T ss_pred EEEEEEEecccccCceEEEEEE-cCCCCccceEEE
Confidence 3567777664 7888888766 344555555554
No 143
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=24.97 E-value=1.8e+02 Score=18.12 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=15.1
Q ss_pred CcCeEEEEEEeCCCcceEEEEEe
Q psy6739 11 GVPQIEVTFDIDANGILNVTAIE 33 (56)
Q Consensus 11 g~~~i~V~f~~d~nGil~V~a~~ 33 (56)
|...++|+|+++.++-|+++.+.
T Consensus 129 g~l~~~vtY~L~~~~~L~i~~~a 151 (335)
T TIGR02636 129 GNLTVSVTYTLTDDNELTIEYEA 151 (335)
T ss_pred eEEEEEEEEEECCCCEEEEEEEE
Confidence 34568899999666656655443
No 144
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=24.94 E-value=1.7e+02 Score=17.73 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCcceEEEEEeCcCCce
Q psy6739 14 QIEVTFDIDANGILNVTAIEKSTGKE 39 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a~~~~~~~~ 39 (56)
.-.+.|.+|++|+=-+-++....|.-
T Consensus 123 ~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 123 YTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred CceEEEEEcCCCEEEEEecCCCCCcE
Confidence 36799999999998888887776653
No 145
>PHA02762 hypothetical protein; Provisional
Probab=24.89 E-value=77 Score=15.08 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=12.1
Q ss_pred eEEEEEEeCCCcceE
Q psy6739 14 QIEVTFDIDANGILN 28 (56)
Q Consensus 14 ~i~V~f~~d~nGil~ 28 (56)
.--||.-+|.||.+.
T Consensus 27 ~afvtigide~g~ia 41 (62)
T PHA02762 27 EAFVTIGIDENDKIS 41 (62)
T ss_pred cEEEEEeECCCCcEE
Confidence 356899999999864
No 146
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=24.65 E-value=1.4e+02 Score=20.42 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCcCeEEEEEEeCCCcceEEEEEeCcCCceE
Q psy6739 10 RGVPQIEVTFDIDANGILNVTAIEKSTGKEN 40 (56)
Q Consensus 10 ~g~~~i~V~f~~d~nGil~V~a~~~~~~~~~ 40 (56)
+|...|+|.+. .+|...|++.|.+.|...
T Consensus 37 Agat~I~v~i~--~~g~~~i~V~DnG~Gi~~ 65 (617)
T PRK00095 37 AGATRIDIEIE--EGGLKLIRVRDNGCGISK 65 (617)
T ss_pred CCCCEEEEEEE--eCCeEEEEEEEcCCCCCH
Confidence 44456777774 568888888998888864
No 147
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=24.41 E-value=1.5e+02 Score=16.88 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCCCCcCeEEEEEEeCCCcceEEEEEeCc
Q psy6739 7 PAPRGVPQIEVTFDIDANGILNVTAIEKS 35 (56)
Q Consensus 7 ~~p~g~~~i~V~f~~d~nGil~V~a~~~~ 35 (56)
|...|. +|.+++..+..|.+.|.+....
T Consensus 115 pl~eGd-~v~vtL~f~~~~~~~v~~~v~~ 142 (151)
T COG2847 115 PLKEGD-KVPVTLKFEKAGKVTVEAPVKK 142 (151)
T ss_pred CccCCC-EEEEEEEEecCCeEEEEEEEec
Confidence 455665 5999999999999999876643
No 148
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=24.39 E-value=1.4e+02 Score=16.47 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=19.0
Q ss_pred eEEEEEEeCCCcceEEEEEeCcCCce
Q psy6739 14 QIEVTFDIDANGILNVTAIEKSTGKE 39 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a~~~~~~~~ 39 (56)
.|.|+|..+. +.|.+.+.|.+.|-.
T Consensus 66 ~I~I~~~~~~-~~l~i~V~D~G~gfd 90 (159)
T TIGR01924 66 EIGISFHIYE-DRLEIIVSDQGDSFD 90 (159)
T ss_pred eEEEEEEEeC-CEEEEEEEEcccccC
Confidence 5888888765 558899998877653
No 149
>PLN00194 aldose 1-epimerase; Provisional
Probab=24.27 E-value=1.3e+02 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=13.6
Q ss_pred cCeEEEEEEeCCCcceEEEEE
Q psy6739 12 VPQIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~ 32 (56)
...++|+|+++.++.|+|+.+
T Consensus 137 ~~~~~v~Y~L~~~~~L~i~~~ 157 (337)
T PLN00194 137 DLSVTVTYTLLSSNTLRLDME 157 (337)
T ss_pred EEEEEEEEEECCCCeEEEEEE
Confidence 356788888876555555543
No 150
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=23.93 E-value=1.7e+02 Score=17.65 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=11.7
Q ss_pred CeEEEEEEeCCCcc-eEEEEE
Q psy6739 13 PQIEVTFDIDANGI-LNVTAI 32 (56)
Q Consensus 13 ~~i~V~f~~d~nGi-l~V~a~ 32 (56)
.+++++|+++.+++ ++.+++
T Consensus 107 ~~~~~~y~L~~~~L~i~~~v~ 127 (288)
T cd09024 107 FELRVTYTLEGNTLKVTYEVK 127 (288)
T ss_pred EEEEEEEEEeCCEEEEEEEEE
Confidence 35778888875543 444444
No 151
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=23.81 E-value=1e+02 Score=16.77 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=12.5
Q ss_pred eEEEEEEeCCCcc-eEEEE
Q psy6739 14 QIEVTFDIDANGI-LNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~nGi-l~V~a 31 (56)
+.+|++.|+.||. ..|..
T Consensus 54 KsQVtveY~~~~~P~ri~t 72 (120)
T PF02772_consen 54 KSQVTVEYDENGKPVRIDT 72 (120)
T ss_dssp EEEEEEEEEETTEEEEEEE
T ss_pred ceeEEEeeccCCceeeeeE
Confidence 6889999987765 44443
No 152
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=23.47 E-value=1.6e+02 Score=17.06 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=19.3
Q ss_pred CCCcCeEEEEEEeCCCcceEEEEEe
Q psy6739 9 PRGVPQIEVTFDIDANGILNVTAIE 33 (56)
Q Consensus 9 p~g~~~i~V~f~~d~nGil~V~a~~ 33 (56)
=.|+.++++...++.++.+.....-
T Consensus 11 LsGCVr~~~~i~~~~~d~i~l~~~l 35 (209)
T PF11353_consen 11 LSGCVRVDAGITFSGDDRIKLAWRL 35 (209)
T ss_pred hcceEEEEEEEEECCCCeEEEEEEe
Confidence 3588889999999999976665543
No 153
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=23.44 E-value=1.9e+02 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.6
Q ss_pred EEEEEEeCCC-cceEEEEEe
Q psy6739 15 IEVTFDIDAN-GILNVTAIE 33 (56)
Q Consensus 15 i~V~f~~d~n-Gil~V~a~~ 33 (56)
.+|.|.||.+ |+|+|..--
T Consensus 725 ~~~~f~y~~~~g~~~~~~~~ 744 (758)
T PLN02355 725 KEVEFRYEEGSGLVTFDLGV 744 (758)
T ss_pred eEeeeEEcCCCCeEEEEcCC
Confidence 5899999986 999988743
No 154
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=23.34 E-value=2.2e+02 Score=18.59 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCcceEEEEEeCcCCceEEEEEEcCCC
Q psy6739 23 ANGILNVTAIEKSTGKENKITITNDRG 49 (56)
Q Consensus 23 ~nGil~V~a~~~~~~~~~~~~i~~~~~ 49 (56)
.+|++++.+..+..|....+.+.+...
T Consensus 222 ~dG~VeIk~IARepG~RtKVAV~S~d~ 248 (374)
T PRK12328 222 KDGEVIIIHSARIPGERAKVALFSNNP 248 (374)
T ss_pred cCCeEEEEEEeccCcceeEEEEEcCCC
Confidence 589999999999999998888866433
No 155
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=23.23 E-value=2.4e+02 Score=18.92 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=22.8
Q ss_pred CCcceEEEEEeCcCCceEEEEEEcCCCCC
Q psy6739 23 ANGILNVTAIEKSTGKENKITITNDRGRL 51 (56)
Q Consensus 23 ~nGil~V~a~~~~~~~~~~~~i~~~~~~l 51 (56)
.+|++++.+..+..|.+..+.+.+...++
T Consensus 216 ~~G~ieIk~iaR~pG~RaKvAV~s~d~~i 244 (470)
T PRK09202 216 ADGLIEIKAIARDPGSRAKIAVKSNDPRI 244 (470)
T ss_pred ccCeEEEEEEeecCcceeEEEEEcCCCCC
Confidence 47999999999999999888887654333
No 156
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=23.06 E-value=1.3e+02 Score=16.87 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=12.7
Q ss_pred EEEEeCCCcceEEEEEe
Q psy6739 17 VTFDIDANGILNVTAIE 33 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~ 33 (56)
+.+.++.+|-+.|+|-.
T Consensus 3 i~l~v~~dg~i~V~aP~ 19 (205)
T PF01863_consen 3 IRLRVDPDGEIVVSAPP 19 (205)
T ss_pred EEEEEcCCCEEEEEECC
Confidence 56778888888888743
No 157
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.99 E-value=1.2e+02 Score=15.27 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=13.8
Q ss_pred CCCCCCc-CeEEEEEEeCCCcc
Q psy6739 6 PPAPRGV-PQIEVTFDIDANGI 26 (56)
Q Consensus 6 p~~p~g~-~~i~V~f~~d~nGi 26 (56)
|+.+.|. ...+|+-+++.||.
T Consensus 34 ~~L~~G~~y~Y~v~a~~~~dG~ 55 (75)
T TIGR03000 34 PPLEAGKEYEYTVTAEYDRDGR 55 (75)
T ss_pred CCCCCCCEEEEEEEEEEecCCc
Confidence 4445553 44777888888885
No 158
>PF11954 DUF3471: Domain of unknown function (DUF3471); InterPro: IPR021860 This entry represents the C-terminal domain of a family of peptidases which belong to MEROPS peptidase family S12, clan SE. The structure of the Pyrococcus abyssi Pab87 peptidase has been determined at 2.2 A resolution []. Pab87 is a self-compartmentalizing proteases that orchestrates protein turnover through an original architecture characterised by a central catalytic chamber.
Probab=22.93 E-value=96 Score=15.46 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=10.5
Q ss_pred EEEEEEeCCCcceE
Q psy6739 15 IEVTFDIDANGILN 28 (56)
Q Consensus 15 i~V~f~~d~nGil~ 28 (56)
..++|..|.+|.++
T Consensus 66 ~~i~F~~d~~G~v~ 79 (100)
T PF11954_consen 66 AQITFERDADGKVT 79 (100)
T ss_pred CEEEEEECCCCCEE
Confidence 45889999888643
No 159
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=22.85 E-value=1.3e+02 Score=19.72 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=15.9
Q ss_pred CCCCCCcCeEEEEEEeCCCcceE
Q psy6739 6 PPAPRGVPQIEVTFDIDANGILN 28 (56)
Q Consensus 6 p~~p~g~~~i~V~f~~d~nGil~ 28 (56)
++...|- ...|.|.++.||.|.
T Consensus 320 ~~~~~gk-tc~VrI~LapDG~V~ 341 (387)
T PRK09510 320 ASSYAGK-TCTLRIKLAPDGTLL 341 (387)
T ss_pred CccccCc-eEEEEEEEcCCCcEE
Confidence 3444453 588999999999864
No 160
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=22.83 E-value=1.6e+02 Score=16.77 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=16.1
Q ss_pred cCeEEEEEEeCCCcceEEEEEeCcCC
Q psy6739 12 VPQIEVTFDIDANGILNVTAIEKSTG 37 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~~~~~~ 37 (56)
...++|.|.++.++ +.|.++....+
T Consensus 75 l~~v~v~~~~~~~~-v~v~~~v~~~~ 99 (151)
T PRK12343 75 ITGVDVDFEVGEDG-IEARVTVKTTY 99 (151)
T ss_pred ceEEEEEEEEcCCE-EEEEEEEEEcC
Confidence 34688999998774 55555544433
No 161
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=22.76 E-value=2.1e+02 Score=18.06 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=17.9
Q ss_pred cCeEEEEEEeCCC-cceEEEEEeCcCC
Q psy6739 12 VPQIEVTFDIDAN-GILNVTAIEKSTG 37 (56)
Q Consensus 12 ~~~i~V~f~~d~n-Gil~V~a~~~~~~ 37 (56)
...++|.|.++.+ +.+++.++....+
T Consensus 80 i~~v~v~~~~~~~~~~v~~~~~v~~~~ 106 (308)
T PRK14499 80 LSGVDVSYEINREEGYIEAVSEVKTEA 106 (308)
T ss_pred cceeEEEEEECCCCCeEEEEEEEEEcC
Confidence 3468999999987 4577766554443
No 162
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=22.67 E-value=1.4e+02 Score=15.91 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.2
Q ss_pred eEEEEEEeCCC-cceEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a 31 (56)
+|.+.+.|+.. +.|+|.+
T Consensus 3 ~i~~sl~y~~~~~~L~V~V 21 (137)
T cd08409 3 DIQISLTYNPTLNRLTVVV 21 (137)
T ss_pred EEEEEEEECCCCCeEEEEE
Confidence 58899999964 7788774
No 163
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=22.54 E-value=72 Score=17.71 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=12.7
Q ss_pred CeEEEEEEeCCCcceEEE
Q psy6739 13 PQIEVTFDIDANGILNVT 30 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~ 30 (56)
+.....+.++.||.+++-
T Consensus 17 ~~~~~~~~V~~dG~I~lP 34 (165)
T TIGR03027 17 PELSGSVPVRPDGKITTP 34 (165)
T ss_pred cccccceEECCCCeEeec
Confidence 345567888888888754
No 164
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=22.37 E-value=1.5e+02 Score=17.55 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=15.6
Q ss_pred CcCeEEEEEEeCCCcceEEE
Q psy6739 11 GVPQIEVTFDIDANGILNVT 30 (56)
Q Consensus 11 g~~~i~V~f~~d~nGil~V~ 30 (56)
.+..|+|.+.+|..|..+|+
T Consensus 12 ~ET~I~v~l~Ldg~g~~~i~ 31 (193)
T PRK13598 12 KETKIEVFLDIDRKGEIKVS 31 (193)
T ss_pred cceEEEEEEEeCCCCceEEe
Confidence 34568999999988887765
No 165
>PF13211 DUF4019: Protein of unknown function (DUF4019)
Probab=22.32 E-value=1.1e+02 Score=15.95 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=12.0
Q ss_pred cCCCCCCCCcCeEEEEEEeC
Q psy6739 3 TSIPPAPRGVPQIEVTFDID 22 (56)
Q Consensus 3 ~~ip~~p~g~~~i~V~f~~d 22 (56)
..+|..|.|.. +-|.|.-.
T Consensus 61 ~~~pg~P~G~Y-v~v~f~T~ 79 (105)
T PF13211_consen 61 TSLPGAPDGEY-VVVQFQTT 79 (105)
T ss_pred cCCCCCCCceE-EEEEEEeE
Confidence 35677888875 55555543
No 166
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=22.23 E-value=98 Score=15.83 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=9.3
Q ss_pred EEEeCCCcceEEEEE
Q psy6739 18 TFDIDANGILNVTAI 32 (56)
Q Consensus 18 ~f~~d~nGil~V~a~ 32 (56)
++..|.+|.|+|...
T Consensus 58 ~~tv~~~G~l~v~m~ 72 (91)
T PF09260_consen 58 SYTVDSNGTLTVPMS 72 (91)
T ss_dssp EEE--TTS-EEEEES
T ss_pred EEEECCCCEEEEEEc
Confidence 677888999888764
No 167
>PF04200 Lipoprotein_17: Lipoprotein associated domain; InterPro: IPR007326 This presumed domain is about 100 amino acids in length. It is found in lipoproteins of unknown function and is most abundant in Mycoplasma pulmonis. The domain is found in up to five copies in some proteins.; PDB: 3K63_A 2KRT_A 3JVC_A.
Probab=21.42 E-value=1e+02 Score=14.64 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=15.0
Q ss_pred eEEEEEEe---CCCcceEEEEEeCcCCceE
Q psy6739 14 QIEVTFDI---DANGILNVTAIEKSTGKEN 40 (56)
Q Consensus 14 ~i~V~f~~---d~nGil~V~a~~~~~~~~~ 40 (56)
.+.+.+.. |.+|.|+|.+.-...+...
T Consensus 44 ~~~~~~~~~~nd~~Gtl~v~~~~~~~~~~~ 73 (84)
T PF04200_consen 44 SFSIKIVNNANDENGTLTVKVKLSKNNKSK 73 (84)
T ss_dssp EEEEEEE-THHHHHTEEEEEEEETTT--EE
T ss_pred EEEEEEccCCcCCCCEEEEEEEEEECCEEE
Confidence 34444433 4669999988875444343
No 168
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=21.36 E-value=75 Score=15.17 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=4.6
Q ss_pred EEeCCCcceEEEEEeCc
Q psy6739 19 FDIDANGILNVTAIEKS 35 (56)
Q Consensus 19 f~~d~nGil~V~a~~~~ 35 (56)
|.++.++.|.+.+.+.+
T Consensus 49 i~i~~~~~vka~a~~~~ 65 (75)
T PF03174_consen 49 ITIPESGTVKARAFDNG 65 (75)
T ss_dssp C--B--S--EEEEE-TT
T ss_pred EEeCCCcEEEEEEEcCC
Confidence 44445555555444433
No 169
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=21.34 E-value=2.3e+02 Score=18.00 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=18.0
Q ss_pred cCeEEEEEEeCCCc---ceEEEEEeCcCCc
Q psy6739 12 VPQIEVTFDIDANG---ILNVTAIEKSTGK 38 (56)
Q Consensus 12 ~~~i~V~f~~d~nG---il~V~a~~~~~~~ 38 (56)
-..++|.|.++.+. -++|.++....++
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (346)
T PRK14500 81 IHGCKFDINIVYQKRDLEIFLQCAVKTNYK 110 (346)
T ss_pred cceeEEEEEECCccCcceEEEEEEEEECCC
Confidence 34688999999874 4777666544443
No 170
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=21.26 E-value=1.8e+02 Score=17.93 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=14.6
Q ss_pred cCeEEEEEEeCCCcceEEEEE
Q psy6739 12 VPQIEVTFDIDANGILNVTAI 32 (56)
Q Consensus 12 ~~~i~V~f~~d~nGil~V~a~ 32 (56)
...++|+|+++.++.|+|+.+
T Consensus 125 ~~~~~v~y~L~~~~~L~i~~~ 145 (326)
T cd09019 125 NLTVTVTYTLTDDNELTIEYE 145 (326)
T ss_pred EEEEEEEEEECCCCEEEEEEE
Confidence 346889999988566666543
No 171
>PF14564 Membrane_bind: Membrane binding; PDB: 1YHP_A 2B1O_A.
Probab=21.19 E-value=1.3e+02 Score=16.11 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=12.3
Q ss_pred EEEEEeCC-CcceEEEE
Q psy6739 16 EVTFDIDA-NGILNVTA 31 (56)
Q Consensus 16 ~V~f~~d~-nGil~V~a 31 (56)
.|-|+||. +|.+++.-
T Consensus 70 svYFkY~~s~g~V~~~~ 86 (110)
T PF14564_consen 70 SVYFKYNPSTGEVSIRK 86 (110)
T ss_dssp EEEEEEETTTTEEEEE-
T ss_pred eEEEEECCCCCeEEEee
Confidence 47899997 79988765
No 172
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=21.15 E-value=1.5e+02 Score=15.91 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=14.4
Q ss_pred eEEEEEEeCCC-cceEEEE
Q psy6739 14 QIEVTFDIDAN-GILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~n-Gil~V~a 31 (56)
+|.+++.|+.. +.|+|.+
T Consensus 3 ~i~~sL~Y~~~~~~L~V~V 21 (136)
T cd08406 3 EILLSLSYLPTAERLTVVV 21 (136)
T ss_pred EEEEEEEEcCCCCEEEEEE
Confidence 58999999965 7788874
No 173
>KOG0104|consensus
Probab=21.01 E-value=1.1e+02 Score=22.21 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=15.9
Q ss_pred eEEEEEEeCCCcceEEEE
Q psy6739 14 QIEVTFDIDANGILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a 31 (56)
.|.+.|.+|..|++.|+-
T Consensus 512 GIk~~F~~D~Sgi~~v~~ 529 (902)
T KOG0104|consen 512 GIKASFSLDLSGIVLVSR 529 (902)
T ss_pred CceEEEEEcCcCceEEee
Confidence 389999999999998874
No 174
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=20.81 E-value=1.9e+02 Score=16.79 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=7.7
Q ss_pred CeEEEEEEeCCCc
Q psy6739 13 PQIEVTFDIDANG 25 (56)
Q Consensus 13 ~~i~V~f~~d~nG 25 (56)
..++++|+++.++
T Consensus 113 ~~l~~ty~L~~~~ 125 (284)
T cd01081 113 LELTVTYTLDADT 125 (284)
T ss_pred EEEEEEEEEeCCe
Confidence 3466677766643
No 175
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.53 E-value=99 Score=13.42 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=10.7
Q ss_pred EEEEEeCCCcceEEEE
Q psy6739 16 EVTFDIDANGILNVTA 31 (56)
Q Consensus 16 ~V~f~~d~nGil~V~a 31 (56)
+|.+.++.+|.|.++.
T Consensus 26 ~v~i~~~~~g~i~i~p 41 (47)
T PF04014_consen 26 EVEIEVEGDGKIVIRP 41 (47)
T ss_dssp EEEEEEETTSEEEEEE
T ss_pred EEEEEEeCCCEEEEEE
Confidence 4777788887665543
No 176
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=20.49 E-value=1.7e+02 Score=16.14 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.4
Q ss_pred eEEEEEEeCCCcceEEEE
Q psy6739 14 QIEVTFDIDANGILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d~nGil~V~a 31 (56)
+|++++.|+ .|.|+|.+
T Consensus 19 ~l~lsl~y~-~~~L~V~V 35 (146)
T cd04028 19 DIQLGLYDK-KGQLEVEV 35 (146)
T ss_pred eEEEEEEeC-CCEEEEEE
Confidence 588888885 78899874
No 177
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=20.43 E-value=70 Score=15.91 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=6.8
Q ss_pred CCcceEEEE
Q psy6739 23 ANGILNVTA 31 (56)
Q Consensus 23 ~nGil~V~a 31 (56)
.||+|+|+.
T Consensus 80 ~~GvL~I~l 88 (90)
T cd06470 80 ENGLLTIDL 88 (90)
T ss_pred eCCEEEEEE
Confidence 578888865
No 178
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=20.41 E-value=1.5e+02 Score=17.53 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=15.4
Q ss_pred CcCeEEEEEEeCCCcceEEE
Q psy6739 11 GVPQIEVTFDIDANGILNVT 30 (56)
Q Consensus 11 g~~~i~V~f~~d~nGil~V~ 30 (56)
.+..|+|.+.+|..|..+|+
T Consensus 8 ~ET~I~v~l~LDg~g~~~i~ 27 (190)
T cd07914 8 KETDIEVELNLDGTGKSKID 27 (190)
T ss_pred cceEEEEEEEeCCCCcccee
Confidence 45579999999988877665
No 179
>KOG4824|consensus
Probab=20.40 E-value=2.2e+02 Score=17.29 Aligned_cols=27 Identities=26% Similarity=0.102 Sum_probs=17.7
Q ss_pred EEEEeCCCcceEEEEEeC--cCCceEEEE
Q psy6739 17 VTFDIDANGILNVTAIEK--STGKENKIT 43 (56)
Q Consensus 17 V~f~~d~nGil~V~a~~~--~~~~~~~~~ 43 (56)
+...++.||.|+|...+. .+|....++
T Consensus 71 ~y~~~nkngkI~Vln~~v~r~dG~~n~ie 99 (224)
T KOG4824|consen 71 AYTFDNKNGKIHVLNECVHRPDGKINFIE 99 (224)
T ss_pred eeEecCCCceEEEeeeeeecCCCccceee
Confidence 333445699999998776 666654443
No 180
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=20.38 E-value=2.4e+02 Score=17.82 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEeCCCcceEEEEEeCcCCceEEEE
Q psy6739 16 EVTFDIDANGILNVTAIEKSTGKENKIT 43 (56)
Q Consensus 16 ~V~f~~d~nGil~V~a~~~~~~~~~~~~ 43 (56)
-+++.+|.+|.|.++.........-.+.
T Consensus 78 ~Lt~~V~~dgslk~tGk~~Kd~~nP~I~ 105 (288)
T COG4814 78 SLTMTVDVDGSLKVTGKISKDAKNPIIE 105 (288)
T ss_pred ceEEEEcCCCcEEEeeeecccCCCCeEE
Confidence 3788899999999998776666554333
No 181
>PF10297 Hap4_Hap_bind: Minimal binding motif of Hap4 for binding to Hap2/3/5 ; InterPro: IPR018287 This entry represents an essential domain of the transcription activator Hap4 that allows it to associate with Hap2, Hap3 and Hap5 to form the Hap complex [, ]. In Saccharomyces cerevisiae (Baker's yeast), the haem-activated protein complex Hap2/3/4/5 plays a major role in the transcription of genes involved in respiration []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.31 E-value=60 Score=11.71 Aligned_cols=6 Identities=50% Similarity=1.536 Sum_probs=3.4
Q ss_pred CCCCCC
Q psy6739 5 IPPAPR 10 (56)
Q Consensus 5 ip~~p~ 10 (56)
|||.|+
T Consensus 7 lPprpk 12 (17)
T PF10297_consen 7 LPPRPK 12 (17)
T ss_pred cCCCCC
Confidence 566554
No 182
>PF07773 DUF1619: Protein of unknown function (DUF1619); InterPro: IPR011677 This is a group of sequences derived from hypothetical eukaryotic proteins. The region in question is approximately 330 residues long and has a cysteine rich N terminus.
Probab=20.19 E-value=2.2e+02 Score=17.25 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=14.5
Q ss_pred CeEEEEEEeCCCcceEEEE
Q psy6739 13 PQIEVTFDIDANGILNVTA 31 (56)
Q Consensus 13 ~~i~V~f~~d~nGil~V~a 31 (56)
.+++..|.++..||..|.+
T Consensus 229 ~~v~y~~~~n~t~I~~v~v 247 (294)
T PF07773_consen 229 LEVHYVFTYNGTGITSVSV 247 (294)
T ss_pred EEEEEEEEECCCccEEEEE
Confidence 4578888899999766664
No 183
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=20.04 E-value=1.7e+02 Score=15.92 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=14.3
Q ss_pred eEEEEEEeC-CCcceEEEE
Q psy6739 14 QIEVTFDID-ANGILNVTA 31 (56)
Q Consensus 14 ~i~V~f~~d-~nGil~V~a 31 (56)
+|.+.+.|+ ..|.|+|.+
T Consensus 3 el~~sL~Y~~~~~~L~V~V 21 (138)
T cd08407 3 EVLLSISYLPAANRLLVVV 21 (138)
T ss_pred EEEEEEEEeCCCCeEEEEE
Confidence 588999998 558888875
Done!