RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6739
(56 letters)
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 109 bits (274), Expect = 3e-30
Identities = 46/55 (83%), Positives = 49/55 (89%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L IPPAPRGVPQIEVTFDIDANGILNV+A +KSTGK NKITITND+GRLSK D
Sbjct: 462 HLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKAD 516
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 104 bits (263), Expect = 1e-28
Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
LT IPPAPRGVPQIEVTFDIDANGI++V+A +K TGKE ITIT G LS E+
Sbjct: 451 NLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEE 504
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 95.0 bits (237), Expect = 3e-25
Identities = 40/55 (72%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
EL IPPAPRGVPQIEVTFDIDANGIL V+A +K TGKE KITIT G LS ++
Sbjct: 452 ELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDE 505
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 93.9 bits (234), Expect = 9e-25
Identities = 41/55 (74%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTFDIDANGIL+V+A +K TGKE ITIT G LS+E+
Sbjct: 449 ELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEE 502
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 84.1 bits (208), Expect = 3e-21
Identities = 36/55 (65%), Positives = 47/55 (85%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
+L IPPAPRGVPQIEVTFD+DANGI+N++A++KSTGK+ +ITI + G LS E+
Sbjct: 492 DLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEE 545
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 82.5 bits (204), Expect = 1e-20
Identities = 34/54 (62%), Positives = 40/54 (74%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKE 54
LT IPPAPRGVPQIEV+F+ID NGIL V+A ++ TG+E I ITN G S E
Sbjct: 453 LLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNTGGLSSNE 506
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 81.3 bits (201), Expect = 3e-20
Identities = 35/45 (77%), Positives = 37/45 (82%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 46
L IPPAPRGVPQIEVTFDIDANGIL+VTA +K TGKE ITI
Sbjct: 454 LDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG 498
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 78.1 bits (193), Expect = 3e-19
Identities = 28/44 (63%), Positives = 37/44 (84%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT 45
L+ IPPAPRGVPQ++V FDIDANGIL V+A +++TG+E +TI
Sbjct: 454 LSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQ 497
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 76.8 bits (189), Expect = 9e-19
Identities = 33/44 (75%), Positives = 37/44 (84%)
Query: 2 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT 45
L IPPAPRGVPQIEV FDIDANGIL+V+A +K TGK+ ITIT
Sbjct: 491 LDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITIT 534
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 74.3 bits (182), Expect = 7e-18
Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
+L IPPAPRGVPQIEVTFDIDANGI +VTA +K+TGK ITIT + G LSKE
Sbjct: 478 DLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQ 531
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 72.8 bits (179), Expect = 2e-17
Identities = 36/46 (78%), Positives = 37/46 (80%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 46
EL IPPAPRGVPQIEVTFDIDANGILNVTA + TGKE ITI
Sbjct: 434 ELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKA 479
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 63.3 bits (155), Expect = 5e-14
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
EL IPP G +I VTF +DA+G+L+VTA+EKSTG E I + G L+ ++
Sbjct: 455 ELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDE 508
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 59.2 bits (144), Expect = 1e-12
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56
EL IPP G +I VTF +DA+G+L V+A E+STG E I + G LS E+
Sbjct: 439 ELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEI 493
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 44.8 bits (106), Expect = 2e-07
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
EL +PP G + EVTF IDA+GIL+V+A EK + + I + + G
Sbjct: 433 ELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHG 481
>gnl|CDD|223795 COG0723, QcrA, Rieske Fe-S protein [Energy production and
conversion].
Length = 177
Score = 23.6 bits (51), Expect = 5.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 PAPRGVPQIEVTFDID 22
PAPR +P + +D D
Sbjct: 145 PAPRPLPIPPLEYDSD 160
>gnl|CDD|221924 pfam13103, TonB_2, TonB C terminal. This family contains TonB
members that are not captured by pfam03544.
Length = 83
Score = 23.4 bits (51), Expect = 6.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 5 IPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 37
+PP G + V ID +G + I KS+G
Sbjct: 17 VPPQVDGGLEAVVRITIDPDGTIVSVRILKSSG 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.131 0.355
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,746,217
Number of extensions: 180883
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 19
Length of query: 56
Length of database: 10,937,602
Length adjustment: 28
Effective length of query: 28
Effective length of database: 9,695,690
Effective search space: 271479320
Effective search space used: 271479320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.2 bits)