RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6739
(56 letters)
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 118 bits (298), Expect = 9e-37
Identities = 41/55 (74%), Positives = 50/55 (90%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
EL+ IPPAPRGVPQIEVTF+IDANGILNV+A +KSTGK N+ITI N++GRL++ D
Sbjct: 69 ELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 118 bits (297), Expect = 1e-36
Identities = 40/55 (72%), Positives = 47/55 (85%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTF +DANGIL V+A +K TGK ITITND+GRL++E+
Sbjct: 69 ELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 116 bits (293), Expect = 5e-36
Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
++T IPPAPRGVPQIEVTF+ID NGIL+V+A +K TG +NK+TITND RLS ED
Sbjct: 69 DVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 123 bits (310), Expect = 2e-35
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
ELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKED
Sbjct: 460 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKED 514
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 96.5 bits (241), Expect = 8e-28
Identities = 36/55 (65%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L IPPAPRGVPQIEVTFDIDANGI++V+A +K TG+E +I I + G LSK+D
Sbjct: 89 TLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGG-LSKDD 142
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 96.9 bits (242), Expect = 2e-27
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L++++
Sbjct: 70 NLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDE 123
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 95.7 bits (239), Expect = 5e-27
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G L+ +
Sbjct: 67 ALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 98.4 bits (246), Expect = 1e-26
Identities = 36/55 (65%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
+LT IPPAPRGVPQIEVTFDIDANGI++V A + T KE ITI + G LS+E+
Sbjct: 427 QLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEE 480
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 97.3 bits (243), Expect = 3e-26
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L++++
Sbjct: 458 NLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDE 511
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 91.6 bits (228), Expect = 3e-26
Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
L IPPAPRGVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G LSK+
Sbjct: 69 SLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 88.2 bits (219), Expect = 5e-25
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 1 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 86 NLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 85.8 bits (213), Expect = 5e-22
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 1 ELTSI--PPAPRGVPQIEVTFDIDANGILNV----------TAIEKSTGKENKITITNDR 48
E+T + P VP +++ D +G+ + + T K++ +TI
Sbjct: 463 EITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHT 521
Query: 49 GRLSKED 55
L +
Sbjct: 522 FGLDAKK 528
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 26.1 bits (57), Expect = 0.46
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 9 PRGVPQIEVTFDIDANGILNVTA-IEKSTGKENKITIT 45
P V + +T + ++G+L V ++ +G E I IT
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPIT 162
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A
{Pseudomonas aeruginosa} SCOP: d.212.1.1
Length = 129
Score = 23.8 bits (51), Expect = 3.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 4 SIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 37
PP+ R +EV ++ +G + ++ +S+G
Sbjct: 43 RRPPSARNGMSVEVLIEMLPDGTITNASVSRSSG 76
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 23.3 bits (50), Expect = 4.3
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 9 PRGVPQIEVTFDIDANGILNVTA-----IEKSTGKENKITIT 45
P V Q ++ + A+G+L + + E I ++
Sbjct: 64 PSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 22.7 bits (49), Expect = 7.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 9 PRGVPQIEVTFDIDANGILNVTA 31
P GV +V+ + G L V A
Sbjct: 59 PPGVDPTQVSSSLSPEGTLTVEA 81
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 22.4 bits (48), Expect = 8.0
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 9 PRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITI 44
P GV VT + G+L++ A S
Sbjct: 63 PPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPP 98
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 22.4 bits (48), Expect = 9.8
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 9 PRGVPQIEVTFDIDANGILNVTA 31
P V + +T + ++G+L V
Sbjct: 58 PADVDPLTITSSMSSDGVLTVNG 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.131 0.355
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 821,559
Number of extensions: 35864
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 18
Length of query: 56
Length of database: 6,701,793
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,920,005
Effective search space: 165760140
Effective search space used: 165760140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.4 bits)