RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6739
         (56 letters)



>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 159

 Score = 80.0 bits (197), Expect = 6e-22
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query: 1   ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 55
           ELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKED
Sbjct: 76  ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKED 130


>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
          Length = 118

 Score = 73.4 bits (180), Expect = 7e-20
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 1   ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
            L  I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI    G
Sbjct: 70  NLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118


>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
           {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 60.0 bits (145), Expect = 2e-14
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query: 1   ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 49
            L  IP  P G   I VTF +DA+G+L+VTA+EKSTG E  I +    G
Sbjct: 67  ALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115


>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
          demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
          1773]}
          Length = 445

 Score = 26.8 bits (57), Expect = 0.13
 Identities = 2/12 (16%), Positives = 5/12 (41%)

Query: 4  SIPPAPRGVPQI 15
          ++P    G  + 
Sbjct: 1  ALPRVSGGHDEH 12


>d2oiwa1 d.38.1.1 (A:1-131) GK1870 orthologue {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 131

 Score = 24.8 bits (53), Expect = 0.50
 Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 1/19 (5%)

Query: 14 QIEVTF-DIDANGILNVTA 31
           I     + D  G +N T 
Sbjct: 5  VITPRVSETDGVGHINNTT 23


>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972
          {Jannaschia sp. CCS1 [TaxId: 290400]}
          Length = 159

 Score = 24.8 bits (53), Expect = 0.58
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 3  TSIPPAPRGVPQIEVTF-DIDANGILNVTA 31
           SIP          V F ++DA G +N TA
Sbjct: 16 LSIPAPWTFGLADRVRFGELDAIGHVNHTA 45


>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 126

 Score = 23.8 bits (51), Expect = 1.1
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 4  SIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 37
            PP+ R    +EV  ++  +G +   ++ +S+G
Sbjct: 41 RRPPSARNGMSVEVLIEMLPDGTITNASVSRSSG 74


>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 242

 Score = 23.2 bits (48), Expect = 2.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 10  RGVPQIEVTFDIDANGI 26
             +P+ E  F I+A+G+
Sbjct: 221 PCLPEAEAMFAINADGV 237


>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 251

 Score = 23.1 bits (48), Expect = 2.5
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 10  RGVPQIEVTFDIDANGI 26
             +P+ E  F I  +G+
Sbjct: 232 PCLPEAECVFAIYEDGV 248


>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 202

 Score = 22.8 bits (48), Expect = 2.6
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 7   PAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKE 54
           PAPR +P + + +D  + G +              I  T  +  L  +
Sbjct: 141 PAPRPLPIVILDYD-SSTGDIYAVGTNAPYF-SAGIPRTTPQDNLLYD 186


>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
           homolog {Human (Homo sapiens) [TaxId: 9606]}
          Length = 258

 Score = 23.1 bits (48), Expect = 2.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 10  RGVPQIEVTFDIDANGILNV 29
             +P+ E TF I A GI + 
Sbjct: 237 PEMPENEATFAITAGGIGDA 256


>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain
          {Phormidium laminosum [TaxId: 32059]}
          Length = 62

 Score = 21.2 bits (45), Expect = 6.2
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 29 VTAIEKSTGKENKITITNDRGR 50
          +TAI K+     ++ I  + G 
Sbjct: 11 ITAIAKADDGSAEVKIRTEDGT 32


>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
          Length = 90

 Score = 21.7 bits (46), Expect = 6.8
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 14 QIEVTFDIDANGILNVTAIEKSTGKE 39
          Q++V FD+  +G ++   I  +    
Sbjct: 26 QVKVKFDVTPDGRVDNVQILSAKPAN 51


>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 146

 Score = 21.4 bits (45), Expect = 10.0
 Identities = 7/37 (18%), Positives = 17/37 (45%)

Query: 20 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDT 56
          D     I+++   E  T +E++  +   R +L +  +
Sbjct: 3  DPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 194,865
Number of extensions: 6822
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 15
Length of query: 56
Length of database: 2,407,596
Length adjustment: 27
Effective length of query: 29
Effective length of database: 2,036,886
Effective search space: 59069694
Effective search space used: 59069694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.5 bits)