BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy674
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
KGKA G RTA++ RS Q L +LG +Q+HAGKV+FVA+L+L TFCVGLK+ +HSK+
Sbjct: 43 KGKARGSRTAIYLRSVFQSHLETLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVH 102
Query: 63 DLWIE 67
LWI+
Sbjct: 103 QLWIQ 107
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
KGKA GQ+ LW R++ Q LFSLG +QRH GKV+F+ LL+ VGL+ + + IE
Sbjct: 51 KGKAVGQKAPLWIRARFQAFLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIE 110
Query: 63 DLWIEG 68
LW+E
Sbjct: 111 KLWVEA 116
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
KGKA G++ LW R+K QR LF LG ++Q++ GK + V LLI F VGLK + + +E
Sbjct: 53 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 112
Query: 63 DLWIE 67
+LW+E
Sbjct: 113 ELWVE 117
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
KGKA G++ LW R+K QR LF LG ++Q++ GK + V LLI F VGLK + + +E
Sbjct: 67 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 126
Query: 63 DLWIE 67
+LW+E
Sbjct: 127 ELWVE 131
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
KG+A G+R LW R+K QR LF+LG ++Q++ GK + V LL F VGL+ + + +E
Sbjct: 68 KGRATGRRAPLWLRAKFQRLLFNLGCYIQKNCGKFLVVGLL-YSAFAVGLRAANLETNVE 126
Query: 63 DLWIE 67
+LW+E
Sbjct: 127 ELWVE 131
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 10 RTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIE 67
+ LW R+ Q LFSLG +QRH GKV+F+ LL +GL+ ++ + +E LW+E
Sbjct: 31 KAPLWLRAYFQGLLFSLGCGIQRHCGKVLFLGLLAFGALALGLRMAIIETNLEQLWVE 88
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 10 RTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIE 67
+ LW R+ Q LFSLG +Q+H GKV+F+ L+ +GL+ V+ + +E LW+E
Sbjct: 31 QAPLWLRAYFQGLLFSLGCRIQKHCGKVLFLGLVAFGALALGLRVAVIETDLEQLWVE 88
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 1 MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSK 60
M +GKA G R AL+ RS +Q+ LF+LG + R+A +I +I C GL+ + +
Sbjct: 101 MNRGKATGNRYALYSRSLIQKLLFALGNTVHRNAWSIILAVSMIFAVCCYGLQYVHIETD 160
Query: 61 IEDLWI 66
I LW+
Sbjct: 161 IVKLWV 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.144 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,206,845
Number of Sequences: 539616
Number of extensions: 693071
Number of successful extensions: 1643
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1633
Number of HSP's gapped (non-prelim): 9
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)