Query psy674
Match_columns 70
No_of_seqs 100 out of 126
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:13:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ne5_A Cation efflux system pr 85.7 0.77 2.6E-05 37.0 4.0 45 15-59 524-568 (1054)
2 4dx5_A Acriflavine resistance 83.6 1.7 5.9E-05 35.0 5.2 42 17-58 521-562 (1057)
3 2v50_A Multidrug resistance pr 83.3 1.6 5.3E-05 35.3 4.8 43 19-61 523-565 (1052)
4 1p58_D Envelope protein M; fla 60.4 9.9 0.00034 22.5 3.3 36 13-48 18-54 (75)
5 3j27_B Matrix protein, small e 53.0 9.9 0.00034 22.4 2.4 28 18-45 24-51 (75)
6 3ne5_A Cation efflux system pr 50.2 14 0.00049 29.7 3.6 40 23-62 9-48 (1054)
7 4dx5_A Acriflavine resistance 45.4 15 0.0005 29.6 3.0 36 27-62 2-37 (1057)
8 2v50_A Multidrug resistance pr 28.4 25 0.00086 28.4 1.8 34 29-62 4-37 (1052)
9 3arc_I Photosystem II reaction 17.8 99 0.0034 16.1 2.3 16 34-49 10-25 (38)
10 3kxt_A Chromatin protein CREN7 15.9 50 0.0017 18.6 0.8 13 56-68 13-25 (56)
No 1
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=85.67 E-value=0.77 Score=36.99 Aligned_cols=45 Identities=20% Similarity=0.044 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeec
Q psy674 15 FRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHS 59 (70)
Q Consensus 15 ~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iET 59 (70)
+..++++.+.++..++-|||+.++.++++++++..+++.++..|-
T Consensus 524 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~f 568 (1054)
T 3ne5_A 524 LNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEF 568 (1054)
T ss_dssp CHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHTHHHHTTCCBCS
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 345678899999999999999999999888887777777766653
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=83.64 E-value=1.7 Score=34.99 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeee
Q psy674 17 SKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVH 58 (70)
Q Consensus 17 ~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iE 58 (70)
.++++.+.++..++-|||+.++.++++++++...++..+..|
T Consensus 521 ~~~~~~y~~~l~~~lr~~~~~~~~~~~~l~~~~~~~~~l~~~ 562 (1057)
T 4dx5_A 521 EKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSS 562 (1057)
T ss_dssp HHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHSCBC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 345678889999999999999999988888777766665554
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=83.28 E-value=1.6 Score=35.34 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=33.7
Q ss_pred HHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccC
Q psy674 19 LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKI 61 (70)
Q Consensus 19 lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp 61 (70)
+.+.+.++..++-|||+.++.+++++++++.+++.++..|-.|
T Consensus 523 ~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P 565 (1052)
T 2v50_A 523 TTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLP 565 (1052)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence 5566889999999999999999888877766676666665444
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=60.43 E-value=9.9 Score=22.47 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHH-HHHHHHHHHcHHHHhhhhHHHHHHHHHHHHH
Q psy674 13 LWFRS-KLQRELFSLGRFLQRHAGKVIFVALLILLTF 48 (70)
Q Consensus 13 l~~~~-~lq~~f~~lG~~var~p~~vi~~~ll~~~~l 48 (70)
.|+.+ ...+.+-|.=.|+-|||+.++...++...+.
T Consensus 18 ~Wl~~~~~~~~l~kvE~WilrNp~~al~a~~~~w~lG 54 (75)
T 1p58_D 18 TWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIG 54 (75)
T ss_pred cccCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHHc
Confidence 35433 5677788889999999999998886555433
No 5
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=52.97 E-value=9.9 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.2
Q ss_pred HHHHHHHHHcHHHHhhhhHHHHHHHHHH
Q psy674 18 KLQRELFSLGRFLQRHAGKVIFVALLIL 45 (70)
Q Consensus 18 ~lq~~f~~lG~~var~p~~vi~~~ll~~ 45 (70)
...+.+-|.=.|+-|||+.++...++..
T Consensus 24 ~~~~~l~rvE~WilrNp~~al~~~~~~w 51 (75)
T 3j27_B 24 GAWKHAQRIETWILRHPGFTIMAAILAY 51 (75)
T ss_dssp HHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 4667788888999999999998877554
No 6
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=50.17 E-value=14 Score=29.71 Aligned_cols=40 Identities=13% Similarity=-0.081 Sum_probs=32.0
Q ss_pred HHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCc
Q psy674 23 LFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62 (70)
Q Consensus 23 f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~ 62 (70)
++++=.|+=|||..++.+.++++++-.+.+.++..|-.|+
T Consensus 9 ~~~~l~~~l~~~~~~~~~~~~l~~~g~~~~~~l~~~~~P~ 48 (1054)
T 3ne5_A 9 IEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPD 48 (1054)
T ss_dssp --CHHHHHHHTHHHHHHHHHHHHHHHHHHHHTCCBCSSCC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhCChhhCCC
Confidence 4567788899999999998888887777788888888775
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=45.44 E-value=15 Score=29.65 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=29.3
Q ss_pred cHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCc
Q psy674 27 GRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62 (70)
Q Consensus 27 G~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~ 62 (70)
..|+-|||..++.+.+++++.-.+++.++.+|-.|+
T Consensus 2 ~~~~l~~~~~~~~~~~~l~~~g~~~~~~l~~~~~P~ 37 (1057)
T 4dx5_A 2 PNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPT 37 (1057)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHSCBCSSCC
T ss_pred cHHHhhCcHHHHHHHHHHHHHHHHHHHhCCHhhCCC
Confidence 367889999999888887777777778888888885
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=28.41 E-value=25 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCc
Q psy674 29 FLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62 (70)
Q Consensus 29 ~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~ 62 (70)
|+-|||..++.+.++++++-.+.+.++..|-.|.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~g~~~~~~l~~~~~P~ 37 (1052)
T 2v50_A 4 FFIDRPIFAWVIALVIMLAGGLSILSLPVNQYPA 37 (1052)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHHTTSCCCSSCC
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHhCCHhhCCC
Confidence 5568999999888888877777777878887775
No 9
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=17.80 E-value=99 Score=16.12 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHH
Q psy674 34 AGKVIFVALLILLTFC 49 (70)
Q Consensus 34 p~~vi~~~ll~~~~l~ 49 (70)
...+.++|+.+++.+|
T Consensus 10 ~vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHccccC
Confidence 3344555555555544
No 10
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=15.88 E-value=50 Score=18.64 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=10.7
Q ss_pred eeeccCccccccC
Q psy674 56 VVHSKIEDLWIEG 68 (70)
Q Consensus 56 ~iETdp~kLWVsp 68 (70)
++|-.|+|-||=.
T Consensus 13 e~~L~P~KvWvL~ 25 (56)
T 3kxt_A 13 EAELVPEKVWALA 25 (56)
T ss_dssp EEEECCSEEEEEC
T ss_pred EEEEeeeEEEEEc
Confidence 6788999999843
Done!