Query psy674
Match_columns 70
No_of_seqs 100 out of 126
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 17:14:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 22.3 16 0.0011 17.9 1.0 27 34-60 11-37 (38)
2 d1u1ha2 c.1.22.2 (A:396-760) 5 20.6 15 0.0011 24.3 0.9 10 60-69 328-337 (365)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 19.1 36 0.0026 17.5 2.2 29 35-63 9-37 (57)
4 d2axti1 f.23.37.1 (I:1-35) Pho 17.1 47 0.0034 15.8 2.1 15 40-54 11-25 (35)
5 d1rfsa_ b.33.1.1 (A:) ISP subu 13.9 22 0.0016 20.6 0.4 20 50-69 93-112 (127)
6 d2g7la2 a.121.1.1 (A:87-230) P 12.3 89 0.0064 17.1 2.9 22 16-37 4-25 (144)
7 d1z0xa2 a.121.1.1 (A:72-220) T 11.5 98 0.0071 17.3 2.9 22 16-37 4-25 (149)
8 d1noga_ a.25.2.2 (A:) Hypothet 10.9 1.2E+02 0.0089 17.8 3.3 27 9-35 117-143 (149)
9 d2vkva2 a.121.1.1 (A:68-205) T 10.6 1.2E+02 0.0088 16.4 3.1 23 16-38 9-31 (138)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 10.5 47 0.0034 15.1 0.9 10 47-56 11-20 (30)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=22.30 E-value=16 Score=17.94 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhceeeecc
Q psy674 34 AGKVIFVALLILLTFCVGLKTHVVHSK 60 (70)
Q Consensus 34 p~~vi~~~ll~~~~l~~Gl~~~~iETd 60 (70)
||+.|=+.-...-+.-.|+..+-||+|
T Consensus 11 PwI~iPvv~wl~p~vvMglLFiyIEse 37 (38)
T d1jb0i_ 11 PWIFIPVVCWLMPTVVMGLLFLYIEGE 37 (38)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHCB
T ss_pred chhHHHHHHHHHHHHHHHHHheeeecc
Confidence 555543332233334467777777776
No 2
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.62 E-value=15 Score=24.30 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=6.7
Q ss_pred cCccccccCC
Q psy674 60 KIEDLWIEGR 69 (70)
Q Consensus 60 dp~kLWVsp~ 69 (70)
+|++||++|+
T Consensus 328 ~~erl~lspd 337 (365)
T d1u1ha2 328 EQNILWVNPD 337 (365)
T ss_dssp CTTTBCBCCS
T ss_pred ChhhEEEcCC
Confidence 5667777764
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=19.09 E-value=36 Score=17.46 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHhhhhceeeeccCcc
Q psy674 35 GKVIFVALLILLTFCVGLKTHVVHSKIED 63 (70)
Q Consensus 35 ~~vi~~~ll~~~~l~~Gl~~~~iETdp~k 63 (70)
+..+++.++++.+.|.++..++-+.+|++
T Consensus 9 ~~~~~~~~i~i~~~s~~~y~~E~~~~~~~ 37 (57)
T d2h8pc1 9 GAATVLLVIVLLAGSYLAVLAERGAPGAQ 37 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 34444445555556777666554445544
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.07 E-value=47 Score=15.81 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhhc
Q psy674 40 VALLILLTFCVGLKT 54 (70)
Q Consensus 40 ~~ll~~~~l~~Gl~~ 54 (70)
+.+.+++++-.|+..
T Consensus 11 vV~fFv~lFiFGFLS 25 (35)
T d2axti1 11 VVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcc
Confidence 333444444445443
No 5
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=13.87 E-value=22 Score=20.60 Aligned_cols=20 Identities=5% Similarity=-0.120 Sum_probs=16.5
Q ss_pred hhhhceeeeccCccccccCC
Q psy674 50 VGLKTHVVHSKIEDLWIEGR 69 (70)
Q Consensus 50 ~Gl~~~~iETdp~kLWVsp~ 69 (70)
-+|..+.+|.+-.++||.|+
T Consensus 93 ~~L~~~~v~v~~g~i~v~~~ 112 (127)
T d1rfsa_ 93 LSLALAHCDVDDGKVVFVPW 112 (127)
T ss_dssp SCCCEEEEEEETTEEEEEEC
T ss_pred CCcceEeEEEECCEEEEEcC
Confidence 46788899999999999874
No 6
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.28 E-value=89 Score=17.07 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcHHHHhhhhHH
Q psy674 16 RSKLQRELFSLGRFLQRHAGKV 37 (70)
Q Consensus 16 ~~~lq~~f~~lG~~var~p~~v 37 (70)
|..+..+...+=....+||+..
T Consensus 4 r~~Lr~~a~~~r~~l~~HP~~~ 25 (144)
T d2g7la2 4 REQLRAVLTSYTLVLFAHPQLA 25 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHH
Confidence 3445555666666677788765
No 7
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=11.47 E-value=98 Score=17.28 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcHHHHhhhhHH
Q psy674 16 RSKLQRELFSLGRFLQRHAGKV 37 (70)
Q Consensus 16 ~~~lq~~f~~lG~~var~p~~v 37 (70)
|..+..+...+=....+||+.+
T Consensus 4 r~~L~~~a~~~~~~~~~hP~~~ 25 (149)
T d1z0xa2 4 YSDLLAFMENYYDLYQQFPCAV 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHH
Confidence 3455566666667788888865
No 8
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=10.93 E-value=1.2e+02 Score=17.78 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHcHHHHhhhh
Q psy674 9 QRTALWFRSKLQRELFSLGRFLQRHAG 35 (70)
Q Consensus 9 ~r~al~~~~~lq~~f~~lG~~var~p~ 35 (70)
+..++..-+++..+||-+++++.+.-+
T Consensus 117 ~~~~~~YlNRLSD~lFvlAR~~~~~~~ 143 (149)
T d1noga_ 117 NKNVLIYANRLSSILFMHALISNKRLN 143 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445566677999999999999876543
No 9
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=10.60 E-value=1.2e+02 Score=16.36 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcHHHHhhhhHHH
Q psy674 16 RSKLQRELFSLGRFLQRHAGKVI 38 (70)
Q Consensus 16 ~~~lq~~f~~lG~~var~p~~vi 38 (70)
+.++..+..++=....+||+..-
T Consensus 9 r~~lr~~a~~~r~~~~~hP~~a~ 31 (138)
T d2vkva2 9 QSFLRNNAMSFRRALLRYRDGAK 31 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHCccHHH
Confidence 45666777777778899998653
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.54 E-value=47 Score=15.13 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=4.4
Q ss_pred HHHhhhhcee
Q psy674 47 TFCVGLKTHV 56 (70)
Q Consensus 47 ~l~~Gl~~~~ 56 (70)
.|-+|++.|.
T Consensus 11 ac~i~lfffa 20 (30)
T d2axtt1 11 ACIIALFFFA 20 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
Done!