RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy674
         (70 letters)



>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
          (EST) Family. 
          Length = 1145

 Score = 93.0 bits (231), Expect = 4e-24
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query: 3  KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
          KGKA G+R  LW R+K QR LF+LG ++Q+H GKV+FV LL+   F VGL+   + + +E
Sbjct: 27 KGKATGRRAPLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVE 86

Query: 63 DLWIE 67
           LW+E
Sbjct: 87 QLWVE 91


>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family.  The model
           describes Niemann-Pick C type protein in eukaryotes. The
           defective protein has been associated with Niemann-Pick
           disease which is described in humans as autosomal
           recessive lipidosis. It is characterized by the
           lysosomal accumulation of unestrified cholesterol. It is
           an integral membrane protein, which indicates that this
           protein is most likely involved in cholesterol transport
           or acts as some component of cholesterol homeostasis
           [Transport and binding proteins, Other].
          Length = 1204

 Score = 29.4 bits (66), Expect = 0.10
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 19  LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWI 66
           L R     G ++ R+ G V+ +++ ++L   VGL    V +    LW+
Sbjct: 309 LARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWV 356


>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
           [General function prediction only].
          Length = 727

 Score = 26.9 bits (60), Expect = 0.68
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 2   FKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLK 53
            + K E ++ +   + KL++ L  + + + RH   V+ VAL+I+     G  
Sbjct: 353 GRKKREEKKDS--KKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGAS 402



 Score = 25.0 bits (55), Expect = 4.2
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 25 SLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDL 64
           L RF+ R    +I + LL+ +    G +     S  E  
Sbjct: 4  KLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTETF 43


>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase. 
          Length = 222

 Score = 26.4 bits (59), Expect = 0.98
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 16  RSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHV 56
           ++ LQR L  L + L      V  V  L +L F +      
Sbjct: 137 KTPLQRLLDKLAKIL------VPIVLALAILVFLIWFFRGG 171


>gnl|CDD|218308 pfam04882, Peroxin-3, Peroxin-3.  Peroxin-3 is a peroxisomal
          protein. It is thought to be involve in membrane
          vesicle assembly prior to the translocation of matrix
          proteins.
          Length = 399

 Score = 26.1 bits (58), Expect = 1.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 25 SLGRFLQRHAGKVIFVALLI 44
          S   FL+RH  K I    +I
Sbjct: 3  STRSFLRRHRRKFIVTGGVI 22


>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
           transporter TauT, and related proteins; solute-binding
           domain.  This subgroup represents the solute-binding
           domain of TauT-like Na(+)- and Cl(-)-dependent
           transporters. Family members include: human TauT which
           transports taurine, human GAT1, GAT2, and GAT3, and
           BGT1, which transport gamma-aminobutyric acid (GABA),
           and human CT1 which transports creatine. This subgroup
           belongs to the solute carrier 6 (SLC6) transporter
           family.
          Length = 543

 Score = 25.2 bits (56), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 28  RFLQRHAGKVIFVALLILLTFCVGL 52
             L+    + IFVA++ L+ F +GL
Sbjct: 381 NVLRLRYRREIFVAIVCLVCFLIGL 405


>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein.  Members of this
           family are integral membrane proteins that are around
           500 residues in length. LMBR1 is not involved in
           preaxial polydactyly, as originally thought. Vertebrate
           members of this family may play a role in limb
           development. A member of this family has been shown to
           be a lipocalin membrane receptor.
          Length = 419

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 7   EGQRTALWFR-SKLQRELFSLGRFLQRHAGKVIFVALLILLTFC 49
             QR+       KL REL      + R     + +  L++LTFC
Sbjct: 230 NEQRSKSATELGKLTRELNL--SAICRSLVYPLAMYTLLVLTFC 271


>gnl|CDD|237125 PRK12519, PRK12519, RNA polymerase sigma factor; Provisional.
          Length = 194

 Score = 23.9 bits (52), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 15 FRSKLQRELFSLGRFLQRHAGKVIFVALLIL 45
          F +    +  +LG    RHAG V  +AL IL
Sbjct: 20 FSALKAGQSAALGVLYDRHAGLVYGLALKIL 50


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,561,904
Number of extensions: 268946
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 20
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.3 bits)