RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy674
         (70 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.20
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 31/80 (38%)

Query: 11  TALWFRSKLQRELFS----------------------LGRFL--------QRHAGKVIFV 40
           TA +F +   +E F+                      +G+FL            G+   V
Sbjct: 24  TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83

Query: 41  ALLILLTFCVG-LKTHVVHS 59
             L L  F    L+ + +H+
Sbjct: 84  LNLCLTEFENCYLEGNDIHA 103


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 26.1 bits (58), Expect = 0.97
 Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 6/37 (16%)

Query: 19  LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTH 55
               L  +G  L      +I V   +L+ +       
Sbjct: 286 FTEVLNGIGTIL------LILVIFTLLIVWVSSFYRS 316


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
           binding, haloacid dehydrogenease superfamily, phosphate
           analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
           PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
           1mo8_A* 1q3i_A
          Length = 1028

 Score = 24.9 bits (55), Expect = 2.1
 Identities = 4/34 (11%), Positives = 9/34 (26%), Gaps = 6/34 (17%)

Query: 19  LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGL 52
           +  E+      +            L +  F + L
Sbjct: 289 IAIEIEHFIHII------TGVAVFLGVSFFILSL 316


>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
           P-type ATPase, membrane protein, hydrolase, aluminium
           fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
           1iwc_A 1iwf_A
          Length = 1034

 Score = 24.9 bits (55), Expect = 2.4
 Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 6/34 (17%)

Query: 19  LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGL 52
           +  E+      +           L     F V +
Sbjct: 294 IAIEIEHFVDII------AGLAILFGATFFIVAM 321


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.4 bits (52), Expect = 4.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 45  LLTFCVGLKTHVVHSKIEDL 64
           +L F   ++ +++ SK  DL
Sbjct: 548 ILDFLPKIEENLICSKYTDL 567


>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
           decline, ATP-binding, DNA DAMA repair, DNA-binding,
           helicase, hydrolase; 1.95A {Escherichia coli} PDB:
           2b2n_A* 4dfc_A
          Length = 483

 Score = 23.5 bits (51), Expect = 6.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 15  FRSKLQRELFSLGRFLQRHAGKVIFVA 41
            +++ +  L +L +FL+   G V+F  
Sbjct: 363 VQAQQKAPLDALRKFLETFDGPVVFSV 389


>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural
          genomics, N structural genomics consortium (NESG),
          PSI-2; NMR {Klebsiella pneumoniae}
          Length = 78

 Score = 23.1 bits (49), Expect = 8.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 45 LLTFCVGLKTHVVHSKIEDLWIEGRH 70
           L    GL    + S  +  WIEG H
Sbjct: 15 ALMVRTGLGARQIESYRQGAWIEGVH 40


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,038,227
Number of extensions: 46672
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 7
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.4 bits)