RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy674
         (70 letters)



>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
          (GRB2), N- and C-terminal domains {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 22.0 bits (47), Expect = 4.9
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 46 LTFCVGLKTHVVHSKIEDLWIEGRH 70
          L+F  G    V++ + +  W +   
Sbjct: 17 LSFKRGDILKVLNEECDQNWYKAEL 41


>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling
          factor, TRCF {Escherichia coli [TaxId: 562]}
          Length = 117

 Score = 22.6 bits (48), Expect = 5.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 17 SKLQRELFSLGRFLQRHAGKVIFVA 41
          ++ +  L +L +FL+   G V+F  
Sbjct: 17 AQQKAPLDALRKFLETFDGPVVFSV 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 249,908
Number of extensions: 8155
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.2 bits)