BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6744
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 88 AMEMKNDIISPVEGQ-FHKIYIQRHENVSI 116
AMEMK DI + E FHKIYIQ+H+NVSI
Sbjct: 8 AMEMKADINAKQEDMMFHKIYIQKHDNVSI 37
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 125 QMKNDIISPVEGQ-FHKIYIQRHENV 149
+MK DI + E FHKIYIQ+H+NV
Sbjct: 10 EMKADINAKQEDMMFHKIYIQKHDNV 35
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 88 AMEMKNDIISPVEGQ-FHKIYIQRHENVSI 116
AMEMK DI + E FHKIYIQ+H+NVSI
Sbjct: 8 AMEMKADINAKQEDMMFHKIYIQKHDNVSI 37
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 125 QMKNDIISPVEGQ-FHKIYIQRHENV 149
+MK DI + E FHKIYIQ+H+NV
Sbjct: 10 EMKADINAKQEDMMFHKIYIQKHDNV 35
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 89 MEMKNDIISPVEGQ-FHKIYIQRHENVSI 116
MEMK DI + E FHKIYIQ+H+NVSI
Sbjct: 1 MEMKADINAKQEDMMFHKIYIQKHDNVSI 29
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 125 QMKNDIISPVEGQ-FHKIYIQRHENV 149
+MK DI + E FHKIYIQ+H+NV
Sbjct: 2 EMKADINAKQEDMMFHKIYIQKHDNV 27
>pdb|3HLS|A Chain A, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|B Chain B, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|C Chain C, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|D Chain D, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|E Chain E, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|F Chain F, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|G Chain G, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|H Chain H, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
Length = 66
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 68 MEDENEKLERLLLSVLPQHVAMEMKN 93
+EDE +K + LL SVLP VA E+++
Sbjct: 40 LEDEKKKTDTLLYSVLPPSVANELRH 65
>pdb|1HBW|A Chain A, Solution Nmr Structure Of The Dimerization Domain Of The
Yeast Transcriptional Activator Gal4 (Residues 50-106)
pdb|1HBW|B Chain B, Solution Nmr Structure Of The Dimerization Domain Of The
Yeast Transcriptional Activator Gal4 (Residues 50-106)
Length = 57
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 67 EMEDENEKLERLLLSVLP-QHVAMEMKNDIISPVEGQFHKIYIQRHENVSINA 118
E+E E+LE+L L + P + + M +K D + +E +++Q +NV+ +A
Sbjct: 7 EVESRLERLEQLFLLIFPREDLDMILKMDSLRDIEALLTGLFVQ--DNVNKDA 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,908,486
Number of Sequences: 62578
Number of extensions: 136260
Number of successful extensions: 259
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 16
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)