Query psy6744
Match_columns 149
No_of_seqs 163 out of 662
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:21:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 100.0 5.1E-33 1.1E-37 254.5 14.3 140 3-147 2-155 (867)
2 KOG3618|consensus 99.8 1.4E-20 3E-25 170.2 13.0 127 22-148 225-384 (1318)
3 KOG4171|consensus 99.7 9.1E-17 2E-21 144.2 9.4 80 58-146 396-484 (671)
4 KOG3618|consensus 99.3 6.2E-13 1.4E-17 121.2 4.6 98 38-145 1018-1126(1318)
5 KOG3619|consensus 99.3 6.4E-12 1.4E-16 116.4 10.7 100 39-143 581-693 (867)
6 KOG1023|consensus 99.1 8.3E-11 1.8E-15 103.7 6.3 78 61-147 252-339 (484)
7 smart00044 CYCc Adenylyl- / gu 98.6 6.2E-08 1.3E-12 74.4 5.9 71 70-148 1-80 (194)
8 PF07701 HNOBA: Heme NO bindin 98.0 3.2E-05 6.9E-10 62.1 8.8 45 47-91 175-219 (219)
9 COG2114 CyaA Adenylate cyclase 93.0 0.25 5.4E-06 39.3 5.4 68 67-147 13-89 (227)
10 PF00211 Guanylate_cyc: Adenyl 83.9 0.64 1.4E-05 34.8 1.6 28 121-148 25-52 (184)
11 PF06295 DUF1043: Protein of u 59.8 50 0.0011 24.1 6.5 46 30-75 3-48 (128)
12 PRK11677 hypothetical protein; 57.3 74 0.0016 23.8 7.1 22 29-50 6-27 (134)
13 KOG0498|consensus 53.4 1.1E+02 0.0024 29.1 9.1 44 4-47 305-348 (727)
14 PRK10772 cell division protein 43.6 1.2E+02 0.0026 21.8 7.4 29 46-74 42-70 (108)
15 PLN03192 Voltage-dependent pot 41.6 2.7E+02 0.0058 26.4 9.8 16 78-93 354-369 (823)
16 PRK00888 ftsB cell division pr 40.5 1.3E+02 0.0028 21.2 6.7 9 85-93 65-73 (105)
17 PRK09174 F0F1 ATP synthase sub 39.2 1.9E+02 0.0041 22.8 8.6 15 22-36 52-66 (204)
18 PF09999 DUF2240: Uncharacteri 36.9 49 0.0011 25.0 3.4 30 120-149 98-137 (144)
19 COG3116 FtsL Cell division pro 32.0 1.9E+02 0.0042 20.7 7.0 28 47-74 41-68 (105)
20 PRK13454 F0F1 ATP synthase sub 30.7 2.5E+02 0.0054 21.5 8.5 14 23-36 31-44 (181)
21 PF01402 RHH_1: Ribbon-helix-h 28.7 65 0.0014 17.9 2.3 17 132-148 8-24 (39)
22 COG4420 Predicted membrane pro 27.9 3.1E+02 0.0067 21.8 9.4 65 17-81 85-149 (191)
23 PF06305 DUF1049: Protein of u 27.7 1.6E+02 0.0034 18.3 7.3 28 27-54 22-49 (68)
24 PHA01748 hypothetical protein 27.5 60 0.0013 20.6 2.2 17 132-148 11-27 (60)
25 PRK05934 type III secretion sy 26.0 4E+02 0.0088 23.0 7.5 76 20-95 247-328 (341)
26 PF12651 RHH_3: Ribbon-helix-h 25.7 76 0.0016 18.8 2.3 17 132-148 11-27 (44)
27 PF15216 TSLP: Thymic stromal 24.0 1.8E+02 0.0039 21.5 4.4 41 5-45 80-120 (124)
28 PF07765 KIP1: KIP1-like prote 23.9 1E+02 0.0022 20.8 2.9 21 126-146 54-74 (74)
29 PF10664 NdhM: Cyanobacterial 23.5 78 0.0017 22.8 2.3 17 129-145 42-58 (108)
30 PF10066 DUF2304: Uncharacteri 21.5 3E+02 0.0065 19.4 6.5 15 59-73 96-110 (115)
31 PF12631 GTPase_Cys_C: Catalyt 21.3 32 0.0007 22.5 0.1 10 129-138 63-72 (73)
32 PF02251 PA28_alpha: Proteasom 20.9 97 0.0021 20.1 2.3 19 71-89 16-34 (64)
33 PF06210 DUF1003: Protein of u 20.8 3.2E+02 0.007 19.4 10.5 61 20-80 34-94 (108)
34 PF09726 Macoilin: Transmembra 20.6 1E+02 0.0022 29.0 3.2 22 65-86 183-204 (697)
No 1
>KOG3619|consensus
Probab=100.00 E-value=5.1e-33 Score=254.55 Aligned_cols=140 Identities=44% Similarity=0.678 Sum_probs=130.4
Q ss_pred ccccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy6744 3 CTSTSPGRKSSANDRTVTVKLRVMVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSV 82 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ql~~~~vl~l~~~~~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~si 82 (149)
+++..+|.+ +++.++++|+++++++|+|.|++|++.++++|.++|++|.+++++++.+.+++.|++++|+||+|+
T Consensus 2 ~~~~~~~~~-----~~~~~~~~ql~an~~~~~~~nl~G~~~~~~~e~~~r~~f~~~~~~i~~r~~l~~~~~~qerlllsv 76 (867)
T KOG3619|consen 2 HLILAIGFN-----AQDVLLLNQLLANAVLFLCINLVGIFTKYMMERAQRQAFLETRKCIEVRMELETEKQQQERLLLSV 76 (867)
T ss_pred eeeccCCcC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666664 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhcccCCc-----ccccccchhhcccCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCC
Q psy6744 83 LPQHVAMEMKNDIISP-----VEGQFHKIYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHE 147 (149)
Q Consensus 83 LP~~IA~~lk~~~~~~-----~~~~f~~i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~ 147 (149)
||+|||.+|+.++..+ .+.+|+++|+++|+||||||| |+|||+|+|++|||||+|||++|++|||
T Consensus 77 lp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~c 155 (867)
T KOG3619|consen 77 LPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHC 155 (867)
T ss_pred hhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcce
Confidence 9999999999988543 134899999999999999999 8999999999999999999999999998
No 2
>KOG3618|consensus
Probab=99.84 E-value=1.4e-20 Score=170.17 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHHHhcccCCcc--
Q psy6744 22 KLRVMVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPV-- 99 (149)
Q Consensus 22 ~~~ql~~~~vl~l~~~~~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~siLP~~IA~~lk~~~~~~~-- 99 (149)
+-+.++...+++.|++++|+....++...+|.+|++..|.+-.++.||.|++-.|++++|++|+.||+.|.++...+.
T Consensus 225 ~~~~l~~r~~lH~~vHliGVHlfim~qVR~R~TFlKVGQs~l~rkdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~n 304 (1318)
T KOG3618|consen 225 LHWELLSRGLLHGCVHLIGVHLFIMSQVRSRSTFLKVGQSILHRKDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSEN 304 (1318)
T ss_pred hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHhhHHHHhhhhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcc
Confidence 334788999999999999999999999999999999999999999999999999999999999999999976554111
Q ss_pred ----------------------cccccchhhcccCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 100 ----------------------EGQFHKIYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 100 ----------------------~~~f~~i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
...|++..++..+||||||| +..+|++||.+|||||+|||+||+..||.
T Consensus 305 d~~~~~~~s~~~r~~~s~~vk~~~~FRPF~M~~menVSILFADIvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcE 384 (1318)
T KOG3618|consen 305 DVKRHATSSPKNRKKKSSIVKAPIAFRPFKMQQMENVSILFADIVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCE 384 (1318)
T ss_pred cccCCCCCCcccccchhhccccccccCchhhhhhhhhhhhhhhhhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 01488999999999999999 56689999999999999999999999984
No 3
>KOG4171|consensus
Probab=99.69 E-value=9.1e-17 Score=144.16 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHHHhcccCCcccccccchhhcccCccchhhc---------cccChhHHH
Q psy6744 58 TRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINAC---------HKCRTQMKN 128 (149)
Q Consensus 58 ~~~~~~~~~~L~~e~~k~e~LL~siLP~~IA~~lk~~~~~~~~~~f~~i~~~~~~~VSILFA---------s~~s~~elV 128 (149)
..++-+...+|+.||+|+++||++|||++||++|++|.. +-+++|++|||||+ ++|+|.++|
T Consensus 396 ~~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~---------v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV 466 (671)
T KOG4171|consen 396 KEKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQGES---------VDAKEFDDVTILFSDIVGFTAICSQCTPMQVV 466 (671)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCCC---------cCccccCceEEEEeccchHHhHhhccCcHHHH
Confidence 345566778999999999999999999999999999873 44678999999999 899999999
Q ss_pred HHHhhHHHhHHHHHHHhC
Q psy6744 129 DIISPVEGQFHKIYIQRH 146 (149)
Q Consensus 129 ~~LNeLf~~FD~la~~~~ 146 (149)
.+||+||++||+++..++
T Consensus 467 ~~LN~lyt~fD~~i~~~~ 484 (671)
T KOG4171|consen 467 NMLNELYTRFDRIIDTHD 484 (671)
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 999999999999998543
No 4
>KOG3618|consensus
Probab=99.35 E-value=6.2e-13 Score=121.16 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=88.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHHHhcccCCcccccccchhhcccCccchh
Q psy6744 38 IIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSIN 117 (149)
Q Consensus 38 ~~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~siLP~~IA~~lk~~~~~~~~~~f~~i~~~~~~~VSIL 117 (149)
++-+|+++..|.+.|..|.+.-+.-..+.+++..|+|.|.||.||+|.|+|++||.+. -|.+.|+++.|+
T Consensus 1018 vLVwFLNreFE~~yRl~f~Gdv~A~~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~----------kYSeNH~~~gvi 1087 (1318)
T KOG3618|consen 1018 VLVWFLNREFEVSYRLHFHGDVEADLDRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQ----------KYSENHDSGGVI 1087 (1318)
T ss_pred HHHHHhhhheeeeEEEEEecchhhchhHHHHHHHHHHHHHHHhccchHHHHHHhhccc----------cccccCccceEE
Confidence 4667789999999999999999999999999999999999999999999999999864 477899999999
Q ss_pred hcc-----------ccChhHHHHHHhhHHHhHHHHHHHh
Q psy6744 118 ACH-----------KCRTQMKNDIISPVEGQFHKIYIQR 145 (149)
Q Consensus 118 FAs-----------~~s~~elV~~LNeLf~~FD~la~~~ 145 (149)
||| -....|..+.||||.+.||+|..+-
T Consensus 1088 FASIvNfnemYeEnyeGGkEflRVLNElIGDFDELLsrP 1126 (1318)
T KOG3618|consen 1088 FASIVNFNEMYEENYEGGKEFLRVLNELIGDFDELLSRP 1126 (1318)
T ss_pred EEEeccHHHHHHHhhhchHHHHHHHHHHhccHHHHhccc
Confidence 993 3468999999999999999998753
No 5
>KOG3619|consensus
Probab=99.34 E-value=6.4e-12 Score=116.36 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=86.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHHHhcccCCcccccccchhhcccCccchhh
Q psy6744 39 IGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINA 118 (149)
Q Consensus 39 ~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~siLP~~IA~~lk~~~~~~~~~~f~~i~~~~~~~VSILF 118 (149)
.-+++....|...|..|++..|..+++.++|+-++.++.||.||||.|||.......... ..+|.+.|++|.|+|
T Consensus 581 ~l~~~~Rq~E~~~RlDFLWk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~-----~eLY~qSy~~VgVMF 655 (867)
T KOG3619|consen 581 ALLLHARQVEYTARLDFLWKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRN-----EELYHQSYDCVGVMF 655 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccch-----HHHHHhhhceEEEEE
Confidence 344566778999999999999999999999999999999999999999999886544221 379999999999999
Q ss_pred c---------cccC----hhHHHHHHhhHHHhHHHHHH
Q psy6744 119 C---------HKCR----TQMKNDIISPVEGQFHKIYI 143 (149)
Q Consensus 119 A---------s~~s----~~elV~~LNeLf~~FD~la~ 143 (149)
| +.++ .-|+.++|||+++.||+|.+
T Consensus 656 ASipnF~dFYsE~d~NneGlECLRlLNEIIaDFDeLL~ 693 (867)
T KOG3619|consen 656 ASIPNFKDFYSECDVNNEGLECLRLLNEIIADFDELLS 693 (867)
T ss_pred EecCCcceeeeeecCCcccchHHHHHHHHHhhHHHhcC
Confidence 9 3343 57999999999999999987
No 6
>KOG1023|consensus
Probab=99.13 E-value=8.3e-11 Score=103.67 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=69.0
Q ss_pred HHHHH-HHHHHHHHHHHHhHHhhCcHHHHHHHhcccCCcccccccchhhcccCccchhhc---------cccChhHHHHH
Q psy6744 61 CIAAR-LEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINAC---------HKCRTQMKNDI 130 (149)
Q Consensus 61 ~~~~~-~~L~~e~~k~e~LL~siLP~~IA~~lk~~~~~~~~~~f~~i~~~~~~~VSILFA---------s~~s~~elV~~ 130 (149)
.++++ .+|+.|++|.++||..+||+.||+++|.|... -.+.|++|||+|+ +.++|.++|.+
T Consensus 252 ~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~v---------~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~ 322 (484)
T KOG1023|consen 252 LVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGKTV---------DPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTL 322 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCcC---------CccccCceeeeeHHHHHHHHHHhcCCCceeeee
Confidence 44443 68999999999999999999999999998742 2467999999999 78999999999
Q ss_pred HhhHHHhHHHHHHHhCC
Q psy6744 131 ISPVEGQFHKIYIQRHE 147 (149)
Q Consensus 131 LNeLf~~FD~la~~~~~ 147 (149)
||++|+.||.+.++|.+
T Consensus 323 lNdlyt~Fd~ii~~~d~ 339 (484)
T KOG1023|consen 323 LNDLYTTFDRIIDKHDV 339 (484)
T ss_pred ccchHHhhhhcccccCC
Confidence 99999999999998875
No 7
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.63 E-value=6.2e-08 Score=74.36 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=61.9
Q ss_pred HHHHHHHHhHHhhCcHHHHHHHhcccCCcccccccchhhcccCccchhhc---------cccChhHHHHHHhhHHHhHHH
Q psy6744 70 DENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQFHK 140 (149)
Q Consensus 70 ~e~~k~e~LL~siLP~~IA~~lk~~~~~~~~~~f~~i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~ 140 (149)
.|+++.++||.+++|++|++++..+... .....+.++||||+ ..++|.+++++||++|..+++
T Consensus 1 ~~~~~~~~ll~~~lP~~v~~~l~~g~~~--------~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~ 72 (194)
T smart00044 1 EEKRKTDRLLDQLLPASVAESLKRGGSP--------VPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDR 72 (194)
T ss_pred ChHHHHHHHHHHhCCHHHHHHHHhCCCC--------ccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999998631 23456899999999 368999999999999999999
Q ss_pred HHHHhCCC
Q psy6744 141 IYIQRHEN 148 (149)
Q Consensus 141 la~~~~~~ 148 (149)
++++|++.
T Consensus 73 ~i~~~gg~ 80 (194)
T smart00044 73 IIDRHGGY 80 (194)
T ss_pred HHHhcCeE
Confidence 99999864
No 8
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=98.04 E-value=3.2e-05 Score=62.07 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHHH
Q psy6744 47 MEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEM 91 (149)
Q Consensus 47 ~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~siLP~~IA~~l 91 (149)
.+...+.......++-+...++++||+|+|+||++|||+.||++|
T Consensus 175 ~~l~~~le~~~~~~Le~~~~~l~~ek~ktd~LL~~mlP~~VA~~L 219 (219)
T PF07701_consen 175 LKLAKQLEQEKSAELEESMRELEEEKKKTDELLYSMLPPSVADRL 219 (219)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhhC
Confidence 344444444444556667789999999999999999999999986
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=92.96 E-value=0.25 Score=39.27 Aligned_cols=68 Identities=6% Similarity=0.025 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhHHhhCcHHHHHHHhcccCCcccccccchhhcccCccchhhc---------cccChhHHHHHHhhHHHh
Q psy6744 67 EMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQ 137 (149)
Q Consensus 67 ~L~~e~~k~e~LL~siLP~~IA~~lk~~~~~~~~~~f~~i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~ 137 (149)
+...+....+.++.++++..+...+..+. . .. .+|||||+ ....|.+++++||+.|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~-~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~ 79 (227)
T COG2114 13 KVAAAGLRSDLVLRLYLARVVGRLLARGG-A-----------GD-RRVTLLFADIVGSTELSESLGDEALVELLNLYFDA 79 (227)
T ss_pred HHHhhhhhhhHHHHHHhhhccchhhcccc-c-----------cC-ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHH
Confidence 34455666777888888888888887653 1 01 68999999 456899999999999999
Q ss_pred HHHHHHHhCC
Q psy6744 138 FHKIYIQRHE 147 (149)
Q Consensus 138 FD~la~~~~~ 147 (149)
++.++.+||-
T Consensus 80 ~~~~v~~~gG 89 (227)
T COG2114 80 VAEVVARHGG 89 (227)
T ss_pred HHHHHHHcCC
Confidence 9999999874
No 10
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=83.95 E-value=0.64 Score=34.76 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=25.1
Q ss_pred ccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 121 KCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 121 ~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
..+|++++++||++|+.+|+++++|++.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~v~~~~g~ 52 (184)
T PF00211_consen 25 QLDPEELVRLLNDFFSSLDRIVKQHGGE 52 (184)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred hCCchhHHHHHHHHHHHhhhcccccccc
Confidence 4469999999999999999999999863
No 11
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.81 E-value=50 Score=24.13 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6744 30 MVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKL 75 (149)
Q Consensus 30 ~vl~l~~~~~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~ 75 (149)
++.|+.+.++|++...+.....+..=.=..++-+.+.+++.-|++-
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V 48 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666778888776664443322111233344444555444443
No 12
>PRK11677 hypothetical protein; Provisional
Probab=57.32 E-value=74 Score=23.75 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q psy6744 29 NMVVLVGGNIIGILLHTMMEHA 50 (149)
Q Consensus 29 ~~vl~l~~~~~G~~~~~l~e~~ 50 (149)
.++.|+.+.++|++........
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 3455666667787766654333
No 13
>KOG0498|consensus
Probab=53.45 E-value=1.1e+02 Score=29.10 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=21.3
Q ss_pred cccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6744 4 TSTSPGRKSSANDRTVTVKLRVMVANMVVLVGGNIIGILLHTMM 47 (149)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ql~~~~vl~l~~~~~G~~~~~l~ 47 (149)
..++.||+.....-+.+-.+...++-+=+.+.+-++|-...++.
T Consensus 305 tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iq 348 (727)
T KOG0498|consen 305 TLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQ 348 (727)
T ss_pred HhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHH
Confidence 45678886544444444444443333333333444665555443
No 14
>PRK10772 cell division protein FtsL; Provisional
Probab=43.56 E-value=1.2e+02 Score=21.79 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6744 46 MMEHAQRKAFLDTRNCIAARLEMEDENEK 74 (149)
Q Consensus 46 l~e~~~R~~f~~~~~~~~~~~~L~~e~~k 74 (149)
......|..|.+..+...++..|+.|..+
T Consensus 42 ~~~h~tR~l~~ele~l~~e~~~Le~Ew~~ 70 (108)
T PRK10772 42 TTAHHTRLLTAEREQLVLERDALDIEWRN 70 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888777654
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=41.63 E-value=2.7e+02 Score=26.35 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=10.4
Q ss_pred hHHhhCcHHHHHHHhc
Q psy6744 78 LLLSVLPQHVAMEMKN 93 (149)
Q Consensus 78 LL~siLP~~IA~~lk~ 93 (149)
-+.+-||+.+..++..
T Consensus 354 ~~l~~Lp~~Lr~~i~~ 369 (823)
T PLN03192 354 QLIDQLPKSICKSICQ 369 (823)
T ss_pred HHHHHcCHHHHHHHHH
Confidence 3555688887766654
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.50 E-value=1.3e+02 Score=21.22 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.1
Q ss_pred HHHHHHHhc
Q psy6744 85 QHVAMEMKN 93 (149)
Q Consensus 85 ~~IA~~lk~ 93 (149)
..+-+..++
T Consensus 65 dyiEe~AR~ 73 (105)
T PRK00888 65 EAIEERARN 73 (105)
T ss_pred HHHHHHHHH
Confidence 344444444
No 17
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.22 E-value=1.9e+02 Score=22.78 Aligned_cols=15 Identities=0% Similarity=-0.341 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHH
Q psy6744 22 KLRVMVANMVVLVGG 36 (149)
Q Consensus 22 ~~~ql~~~~vl~l~~ 36 (149)
++.+++|.++.|+.+
T Consensus 52 ~~~~l~w~~I~FliL 66 (204)
T PRK09174 52 YASQLLWLAITFGLF 66 (204)
T ss_pred ccHHHHHHHHHHHHH
Confidence 344666665555543
No 18
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=36.93 E-value=49 Score=25.04 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=26.1
Q ss_pred cccChhHHHHHHhhHHHhHH----------HHHHHhCCCC
Q psy6744 120 HKCRTQMKNDIISPVEGQFH----------KIYIQRHENV 149 (149)
Q Consensus 120 s~~s~~elV~~LNeLf~~FD----------~la~~~~~~~ 149 (149)
+..+.+|+|..+|++=.+|+ -.|.++||||
T Consensus 98 ~g~~~~evv~~in~~q~~~~~~l~~e~aall~ake~Gvdv 137 (144)
T PF09999_consen 98 TGIEKQEVVAEINELQEELGGLLDPEAAALLYAKEKGVDV 137 (144)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCCH
Confidence 56789999999999999999 4568999986
No 19
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=32.05 E-value=1.9e+02 Score=20.75 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6744 47 MEHAQRKAFLDTRNCIAARLEMEDENEK 74 (149)
Q Consensus 47 ~e~~~R~~f~~~~~~~~~~~~L~~e~~k 74 (149)
+....|.-|.+..+.+.++.+++.|..+
T Consensus 41 ~tH~tRqL~~e~~~~~~er~~L~~Ewrn 68 (105)
T COG3116 41 TTHHTRQLIAELEQLVLERDALNIEWRN 68 (105)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHH
Confidence 3456688888888888888888776653
No 20
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.66 E-value=2.5e+02 Score=21.52 Aligned_cols=14 Identities=21% Similarity=0.052 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q psy6744 23 LRVMVANMVVLVGG 36 (149)
Q Consensus 23 ~~ql~~~~vl~l~~ 36 (149)
..+++|-++.|+.+
T Consensus 31 ~~q~~~~lI~F~iL 44 (181)
T PRK13454 31 PNQIFWLLVTLVAI 44 (181)
T ss_pred chHHHHHHHHHHHH
Confidence 34555555555443
No 21
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=28.66 E-value=65 Score=17.89 Aligned_cols=17 Identities=0% Similarity=0.028 Sum_probs=13.6
Q ss_pred hhHHHhHHHHHHHhCCC
Q psy6744 132 SPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 132 NeLf~~FD~la~~~~~~ 148 (149)
-+++.++|++|++.|..
T Consensus 8 ~~~~~~l~~~a~~~g~s 24 (39)
T PF01402_consen 8 DELYERLDELAKELGRS 24 (39)
T ss_dssp HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 36788999999998854
No 22
>COG4420 Predicted membrane protein [Function unknown]
Probab=27.88 E-value=3.1e+02 Score=21.79 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=43.3
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy6744 17 RTVTVKLRVMVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLS 81 (149)
Q Consensus 17 ~~~~~~~~ql~~~~vl~l~~~~~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~s 81 (149)
|.+||.|=.++...+.-+.+.++.+.=+.+.++..-++.++.+-..+++++...--.+.+.|-+.
T Consensus 85 DpyPFi~LnLllS~~AaiqAp~IlmSQNRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~ 149 (191)
T COG4420 85 DPYPFILLNLLLSTLAAIQAPLILMSQNRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLD 149 (191)
T ss_pred CCccHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466666666666666667777777777777777777777777666666555555555555544
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.65 E-value=1.6e+02 Score=18.34 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy6744 27 VANMVVLVGGNIIGILLHTMMEHAQRKA 54 (149)
Q Consensus 27 ~~~~vl~l~~~~~G~~~~~l~e~~~R~~ 54 (149)
+.-++.|+.+-++|...........|+.
T Consensus 22 l~il~~f~~G~llg~l~~~~~~~~~r~~ 49 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLPSRLRLRRR 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544444444443
No 24
>PHA01748 hypothetical protein
Probab=27.48 E-value=60 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=14.0
Q ss_pred hhHHHhHHHHHHHhCCC
Q psy6744 132 SPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 132 NeLf~~FD~la~~~~~~ 148 (149)
.++..++|++|+++|++
T Consensus 11 ~el~~eld~~a~~~g~~ 27 (60)
T PHA01748 11 EDLLELLDRYAIKHGLN 27 (60)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 46788999999998875
No 25
>PRK05934 type III secretion system protein; Validated
Probab=26.00 E-value=4e+02 Score=23.00 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=48.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHhHHhhCcHHHHHHHhc
Q psy6744 20 TVKLRVMVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNC---IAA---RLEMEDENEKLERLLLSVLPQHVAMEMKN 93 (149)
Q Consensus 20 ~~~~~ql~~~~vl~l~~~~~G~~~~~l~e~~~R~~f~~~~~~---~~~---~~~L~~e~~k~e~LL~siLP~~IA~~lk~ 93 (149)
...++.++...++++...++|+...|+...+..+.=.+.++. +.. -.-++.|.=|.-.+++|-|++..|.++..
T Consensus 247 ~~~~~~~~~~~i~~~~l~i~~~a~fyla~~~y~~~~~~~~ki~~~~Dp~~La~lL~~EHPQTIALILS~Ldp~qAAeVLs 326 (341)
T PRK05934 247 SRLSKILLGITILLLSLGILALASFYLAFHAYERVSQEKEKIKQGINIPKLIEIMQKESPEKIALILSYLDPKKAEELLN 326 (341)
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhhHHhhcCCHHHHHHHHhccCHHHHHHHHHcCCHHHHHHHHH
Confidence 456667778888888988999999888755544333332221 001 11335666677777777777777777665
Q ss_pred cc
Q psy6744 94 DI 95 (149)
Q Consensus 94 ~~ 95 (149)
..
T Consensus 327 ~L 328 (341)
T PRK05934 327 KL 328 (341)
T ss_pred hC
Confidence 54
No 26
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=25.73 E-value=76 Score=18.83 Aligned_cols=17 Identities=0% Similarity=-0.039 Sum_probs=14.2
Q ss_pred hhHHHhHHHHHHHhCCC
Q psy6744 132 SPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 132 NeLf~~FD~la~~~~~~ 148 (149)
+|++.++|.++++.|++
T Consensus 11 ~el~~~L~~ls~~t~i~ 27 (44)
T PF12651_consen 11 KELYEKLKELSEETGIP 27 (44)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 57888999999988875
No 27
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=24.01 E-value=1.8e+02 Score=21.47 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=19.6
Q ss_pred ccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6744 5 STSPGRKSSANDRTVTVKLRVMVANMVVLVGGNIIGILLHT 45 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ql~~~~vl~l~~~~~G~~~~~ 45 (149)
.+||||+..--....+--=+.+..+..+=-..+++|+|.++
T Consensus 80 ~~CPGyse~QiN~tQ~m~k~~v~~n~Cleq~s~ll~lWr~f 120 (124)
T PF15216_consen 80 NYCPGYSETQINNTQAMKKRKVTTNKCLEQVSQLLELWRRF 120 (124)
T ss_pred HhCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889864221111111111234555555555666666554
No 28
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=23.94 E-value=1e+02 Score=20.81 Aligned_cols=21 Identities=0% Similarity=-0.004 Sum_probs=19.4
Q ss_pred HHHHHHhhHHHhHHHHHHHhC
Q psy6744 126 MKNDIISPVEGQFHKIYIQRH 146 (149)
Q Consensus 126 elV~~LNeLf~~FD~la~~~~ 146 (149)
+|+.++-|+|...-.||++|.
T Consensus 54 ~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 54 ELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999874
No 29
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=23.54 E-value=78 Score=22.77 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.4
Q ss_pred HHHhhHHHhHHHHHHHh
Q psy6744 129 DIISPVEGQFHKIYIQR 145 (149)
Q Consensus 129 ~~LNeLf~~FD~la~~~ 145 (149)
..|+.++.+||+|.+.+
T Consensus 42 ~~l~kVy~~F~eLVe~~ 58 (108)
T PF10664_consen 42 EALQKVYRKFDELVESY 58 (108)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35889999999999865
No 30
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=21.52 E-value=3e+02 Score=19.38 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy6744 59 RNCIAARLEMEDENE 73 (149)
Q Consensus 59 ~~~~~~~~~L~~e~~ 73 (149)
+++.++-.-+|.|.+
T Consensus 96 ~~L~qeiAl~e~~~~ 110 (115)
T PF10066_consen 96 KRLAQEIALLEAEEK 110 (115)
T ss_pred HHHHHHHHHHhhhhh
Confidence 344544444444333
No 31
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.34 E-value=32 Score=22.45 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=7.8
Q ss_pred HHHhhHHHhH
Q psy6744 129 DIISPVEGQF 138 (149)
Q Consensus 129 ~~LNeLf~~F 138 (149)
++|+++|++|
T Consensus 63 diLd~IFs~F 72 (73)
T PF12631_consen 63 DILDNIFSNF 72 (73)
T ss_dssp HHHHHHHCTS
T ss_pred HHHHHHHHhh
Confidence 4688888887
No 32
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=20.88 E-value=97 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.8
Q ss_pred HHHHHHHhHHhhCcHHHHH
Q psy6744 71 ENEKLERLLLSVLPQHVAM 89 (149)
Q Consensus 71 e~~k~e~LL~siLP~~IA~ 89 (149)
-.++.|+|+.+.+|..|++
T Consensus 16 l~~eAE~Lv~~~fP~KI~e 34 (64)
T PF02251_consen 16 LTKEAENLVSNFFPQKIVE 34 (64)
T ss_dssp HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHH
Confidence 3567899999999999874
No 33
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.78 E-value=3.2e+02 Score=19.44 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6744 20 TVKLRVMVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLL 80 (149)
Q Consensus 20 ~~~~~ql~~~~vl~l~~~~~G~~~~~l~e~~~R~~f~~~~~~~~~~~~L~~e~~k~e~LL~ 80 (149)
||.+-.++......+.+.++.+.=+...++.++++-++..-..++..+.+.-.++.+.+..
T Consensus 34 PFilLnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~ 94 (108)
T PF06210_consen 34 PFILLNLVLSLEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALRE 94 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555666666666666655555555555544455444443
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.58 E-value=1e+02 Score=29.04 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHHhhCcHH
Q psy6744 65 RLEMEDENEKLERLLLSVLPQH 86 (149)
Q Consensus 65 ~~~L~~e~~k~e~LL~siLP~~ 86 (149)
+.+...|++.-=+||..-||+.
T Consensus 183 q~~v~~~n~~~~~~l~~~lp~~ 204 (697)
T PF09726_consen 183 QREVQKENEFYMQLLQQALPPE 204 (697)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 3455666777778999999977
Done!