Query psy6744
Match_columns 149
No_of_seqs 163 out of 662
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:21:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y10_A Hypothetical protein RV 98.7 4E-09 1.4E-13 90.1 3.9 80 67-147 159-257 (407)
2 3hls_A Guanylate cyclase solub 98.6 4.9E-07 1.7E-11 59.0 9.0 36 59-94 31-66 (66)
3 1azs_A VC1; complex (lyase/hyd 98.3 2.2E-07 7.6E-12 72.8 1.7 63 86-148 6-78 (220)
4 3uvj_A Guanylate cyclase solub 97.5 3.3E-05 1.1E-09 60.1 1.6 44 105-148 6-58 (225)
5 1ab8_A Adenylyl cyclase; lyase 97.4 2.4E-05 8.1E-10 60.7 0.2 41 105-145 6-59 (220)
6 1ybt_A Hydrolase, alpha/beta h 96.8 0.00029 1E-08 53.0 0.9 43 106-148 10-61 (184)
7 2w01_A Adenylate cyclase; guan 96.6 0.00089 3.1E-08 51.0 2.4 38 111-148 12-58 (208)
8 1wc3_A Adenylate cyclase; solu 96.4 0.0014 4.9E-08 50.4 2.4 38 111-148 25-71 (219)
9 3r5g_A CYAB; adenylyl cyclase, 89.8 0.22 7.7E-06 36.8 3.1 29 120-148 25-53 (198)
10 3et6_A Soluble guanylyl cyclas 88.2 0.27 9.2E-06 36.2 2.6 26 120-145 25-50 (190)
11 2wz1_A Guanylate cyclase solub 86.7 0.25 8.5E-06 37.8 1.6 24 124-147 36-62 (219)
12 1yk9_A Adenylate cyclase; beta 82.4 0.097 3.3E-06 39.5 -2.4 29 120-148 26-54 (204)
13 1fx2_A Receptor-type adenylate 78.1 1.1 3.8E-05 34.0 2.3 26 123-148 30-55 (235)
14 3t98_B Nucleoporin NUP58/NUP45 49.5 17 0.00058 24.5 3.5 25 120-144 42-66 (93)
15 3mr7_A Adenylate/guanylate cyc 46.1 14 0.00049 26.7 2.9 27 121-148 24-51 (189)
16 3beh_A MLL3241 protein; transm 36.1 95 0.0032 24.4 6.6 12 3-14 171-182 (355)
17 2cpg_A REPA protein, transcrip 35.9 26 0.00089 19.2 2.4 17 132-148 11-27 (45)
18 3bua_E HSNM1B, DNA cross-LINK 34.9 20 0.00068 19.8 1.6 20 128-147 15-36 (36)
19 1avo_A 11S regulator; proteaso 23.7 51 0.0017 20.2 2.3 17 72-88 19-35 (60)
20 3eff_K Voltage-gated potassium 21.7 2E+02 0.0067 19.6 9.1 39 4-46 51-89 (139)
21 2gpe_A Bifunctional protein PU 21.6 64 0.0022 18.3 2.4 17 132-148 12-28 (52)
No 1
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=98.75 E-value=4e-09 Score=90.07 Aligned_cols=80 Identities=8% Similarity=0.090 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhHHhhCc-------HHHHHHHhcccCCcc---cccccchhhcccCccchhhc---------cccChhHH
Q psy6744 67 EMEDENEKLERLLLSVLP-------QHVAMEMKNDIISPV---EGQFHKIYIQRHENVSINAC---------HKCRTQMK 127 (149)
Q Consensus 67 ~L~~e~~k~e~LL~siLP-------~~IA~~lk~~~~~~~---~~~f~~i~~~~~~~VSILFA---------s~~s~~el 127 (149)
....+++|+++||.+||| ++||++++.+..... ...+...|+..+.+|||||+ .+++|.++
T Consensus 159 ~~~ee~~kse~LL~~iLP~L~~~l~~~va~~L~~~~~~~~v~~~~r~~~~~~~~~~~vTVlFaDIvgFT~ls~~~~p~ev 238 (407)
T 1y10_A 159 TELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVSAEEL 238 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCEEEEEEEEEECSBCTTSCBCCHHHH
T ss_pred CcHhHHHHHHHHHHHhcccccccchHHHHHHHHhcccchhhhhhhhcccccccceeeEEEEEEEccCchHHHhhCCHHHH
Confidence 456788999999999999 999999998753210 00111234456899999999 56789999
Q ss_pred HHHHhhHHHhHHHHHHHhCC
Q psy6744 128 NDIISPVEGQFHKIYIQRHE 147 (149)
Q Consensus 128 V~~LNeLf~~FD~la~~~~~ 147 (149)
+.+||++|+.||.+.+ |+.
T Consensus 239 v~lLn~~~~~~~~i~~-~~g 257 (407)
T 1y10_A 239 GHLAGRLAGLARDLTA-PPV 257 (407)
T ss_dssp HHHHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHHHHHHHH-cCc
Confidence 9999999999999876 443
No 2
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=98.57 E-value=4.9e-07 Score=58.96 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHHHhcc
Q psy6744 59 RNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKND 94 (149)
Q Consensus 59 ~~~~~~~~~L~~e~~k~e~LL~siLP~~IA~~lk~~ 94 (149)
.++-+...+|+.||+|+|+||++|||++||++|+.|
T Consensus 31 ~~Lee~t~~L~~EK~ktd~LL~~mLP~~VA~~Lk~G 66 (66)
T 3hls_A 31 DRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRHK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCc
Confidence 344556689999999999999999999999999975
No 3
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=98.26 E-value=2.2e-07 Score=72.80 Aligned_cols=63 Identities=40% Similarity=0.534 Sum_probs=44.6
Q ss_pred HHHHHHhcccCC-cccccccchhhcccCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 86 HVAMEMKNDIIS-PVEGQFHKIYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 86 ~IA~~lk~~~~~-~~~~~f~~i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
|-|.+||.++.. .+++.|+++|++.+.+|||||+ .+++|.+++.+||++|+.||+++.+|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~ 78 (220)
T 1azs_A 6 HHAMEMKADINAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCL 78 (220)
T ss_dssp ---------------CCSSCCCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEE
T ss_pred hhhHhhhccccccccccccccccccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 457788877643 3456799999999999999999 45799999999999999999999999853
No 4
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=97.47 E-value=3.3e-05 Score=60.06 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=38.8
Q ss_pred chhhcccCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 105 KIYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 105 ~i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
+.+.+++.+|||||+ .+++|++++.+||++|..||+++.+|+..
T Consensus 6 ~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~ 58 (225)
T 3uvj_A 6 VVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVY 58 (225)
T ss_dssp EEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeE
Confidence 345678999999999 56799999999999999999999999864
No 5
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=97.41 E-value=2.4e-05 Score=60.66 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=35.3
Q ss_pred chhhcccCccchhhc---------ccc----ChhHHHHHHhhHHHhHHHHHHHh
Q psy6744 105 KIYIQRHENVSINAC---------HKC----RTQMKNDIISPVEGQFHKIYIQR 145 (149)
Q Consensus 105 ~i~~~~~~~VSILFA---------s~~----s~~elV~~LNeLf~~FD~la~~~ 145 (149)
.++.+.+.+|||||+ .++ +|.+++.+||++|..||+++.+|
T Consensus 6 ~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~ 59 (220)
T 1ab8_A 6 ELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKP 59 (220)
T ss_dssp -CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSG
T ss_pred cccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999999999 334 37899999999999999999887
No 6
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=96.79 E-value=0.00029 Score=53.04 Aligned_cols=43 Identities=5% Similarity=-0.161 Sum_probs=35.7
Q ss_pred hhhcccCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 106 IYIQRHENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 106 i~~~~~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
.+...+.++||||+ .+++|++++.+||++|..||+++.+|+..
T Consensus 10 ~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~ 61 (184)
T 1ybt_A 10 HGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGR 61 (184)
T ss_dssp ---CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 44567889999999 44689999999999999999999999854
No 7
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=96.59 E-value=0.00089 Score=51.01 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=34.3
Q ss_pred cCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 111 HENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 111 ~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
..+|||||+ .+++|++++.+||++|+.+++++.+|+..
T Consensus 12 ~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~ 58 (208)
T 2w01_A 12 RRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGT 58 (208)
T ss_dssp EEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 578999999 46789999999999999999999999864
No 8
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=96.38 E-value=0.0014 Score=50.43 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=34.1
Q ss_pred cCccchhhc---------cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 111 HENVSINAC---------HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 111 ~~~VSILFA---------s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
..+|||||+ .+++|++++++||++|..+++++.+|+..
T Consensus 25 ~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~ 71 (219)
T 1wc3_A 25 PRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGT 71 (219)
T ss_dssp EEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred eeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 468999999 46789999999999999999999999854
No 9
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=89.77 E-value=0.22 Score=36.81 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=26.4
Q ss_pred cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 120 HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 120 s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
.+++|.+++.+||++|..|++++++|+-.
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~i~~~~G~ 53 (198)
T 3r5g_A 25 EELEAEALTDLLNNYLNEMSKIALKYGGT 53 (198)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 56799999999999999999999999854
No 10
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=88.22 E-value=0.27 Score=36.19 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=24.4
Q ss_pred cccChhHHHHHHhhHHHhHHHHHHHh
Q psy6744 120 HKCRTQMKNDIISPVEGQFHKIYIQR 145 (149)
Q Consensus 120 s~~s~~elV~~LNeLf~~FD~la~~~ 145 (149)
.+++|++++.+||++|..||+++++|
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~i~~~ 50 (190)
T 3et6_A 25 SRSSPLEVXSLLDELYQRFDAAIEEY 50 (190)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 56799999999999999999999998
No 11
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=86.68 E-value=0.25 Score=37.76 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=21.7
Q ss_pred hhHHHHHHhhHHHhHHHHHH---HhCC
Q psy6744 124 TQMKNDIISPVEGQFHKIYI---QRHE 147 (149)
Q Consensus 124 ~~elV~~LNeLf~~FD~la~---~~~~ 147 (149)
|++++.+||++|+.||++++ +|+.
T Consensus 36 ~~~~~~~Ln~~~~~~~~~i~~~~~~~g 62 (219)
T 2wz1_A 36 AMKIVNLLNDLYTRFDTLTDSRKNPFV 62 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCE
Confidence 99999999999999999998 5554
No 12
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=82.42 E-value=0.097 Score=39.55 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=26.1
Q ss_pred cccChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 120 HKCRTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 120 s~~s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
.+++|++++.+||++|..||+++++|+..
T Consensus 26 ~~~~~~~~~~~ln~~~~~~~~~i~~~gG~ 54 (204)
T 1yk9_A 26 SSTAPADLVRFLDRLYSAFDELVDQHGLE 54 (204)
T ss_dssp CCCCSSSTTTHHHHHHTTTTGGGTTSSCE
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46789999999999999999999998854
No 13
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=78.13 E-value=1.1 Score=33.95 Aligned_cols=26 Identities=4% Similarity=0.018 Sum_probs=23.6
Q ss_pred ChhHHHHHHhhHHHhHHHHHHHhCCC
Q psy6744 123 RTQMKNDIISPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 123 s~~elV~~LNeLf~~FD~la~~~~~~ 148 (149)
.|.+++.+||++|+.||+++.+|+..
T Consensus 30 ~~~~~~~~l~~~~~~~~~~i~~~~G~ 55 (235)
T 1fx2_A 30 HPDLMPDAVAAHHRMVRSLIGRYKCY 55 (235)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 38999999999999999999999853
No 14
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=49.52 E-value=17 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.5
Q ss_pred cccChhHHHHHHhhHHHhHHHHHHH
Q psy6744 120 HKCRTQMKNDIISPVEGQFHKIYIQ 144 (149)
Q Consensus 120 s~~s~~elV~~LNeLf~~FD~la~~ 144 (149)
+.+||++|+..|..+...|=.||.+
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~ 66 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQ 66 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999888865
No 15
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=46.08 E-value=14 Score=26.66 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=21.6
Q ss_pred ccChhHHHHHHhhHHHh-HHHHHHHhCCC
Q psy6744 121 KCRTQMKNDIISPVEGQ-FHKIYIQRHEN 148 (149)
Q Consensus 121 ~~s~~elV~~LNeLf~~-FD~la~~~~~~ 148 (149)
+++|++ +..||+.|.. ||+++.+|+..
T Consensus 24 ~~~~~~-~~~l~~~~~~~~~~~i~~~~G~ 51 (189)
T 3mr7_A 24 RNETDV-LNRQKLYRRELIDPAIAQAGGQ 51 (189)
T ss_dssp CCCHHH-HHHHHHHHHHTHHHHHHHTTCE
T ss_pred hCCHHH-HHHHHHHHHHHHHHHHHHcCCE
Confidence 456655 5889999998 99999999864
No 16
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=36.09 E-value=95 Score=24.40 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=7.9
Q ss_pred ccccCCCCCCcc
Q psy6744 3 CTSTSPGRKSSA 14 (149)
Q Consensus 3 ~~~~~~~~~~~~ 14 (149)
.+.++.||.+-+
T Consensus 171 ~t~ttvGygd~~ 182 (355)
T 3beh_A 171 VTLSTTGYGDTI 182 (355)
T ss_dssp HHHTTCCCSSSC
T ss_pred hheeecCCCCCC
Confidence 356788997543
No 17
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=35.94 E-value=26 Score=19.22 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=13.7
Q ss_pred hhHHHhHHHHHHHhCCC
Q psy6744 132 SPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 132 NeLf~~FD~la~~~~~~ 148 (149)
.++..++|++|++.|.+
T Consensus 11 ~~l~~~Ld~~a~~~g~s 27 (45)
T 2cpg_A 11 ESVLENLEKMAREMGLS 27 (45)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 46888999999988764
No 18
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=34.89 E-value=20 Score=19.84 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=15.0
Q ss_pred HHHHhhHHH--hHHHHHHHhCC
Q psy6744 128 NDIISPVEG--QFHKIYIQRHE 147 (149)
Q Consensus 128 V~~LNeLf~--~FD~la~~~~~ 147 (149)
|.+||.-|+ .||+-.+++|.
T Consensus 15 v~~l~a~~Ssr~FD~QVEK~~k 36 (36)
T 3bua_E 15 VNFFQAGYSSRRFDQQVEKYHK 36 (36)
T ss_pred HHHHhcccchhhHHHHHHHhcC
Confidence 456666666 79999999874
No 19
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=23.71 E-value=51 Score=20.21 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.2
Q ss_pred HHHHHHhHHhhCcHHHH
Q psy6744 72 NEKLERLLLSVLPQHVA 88 (149)
Q Consensus 72 ~~k~e~LL~siLP~~IA 88 (149)
.++.|+|+.+.+|.-|+
T Consensus 19 ~~eAE~ll~~~fP~KI~ 35 (60)
T 1avo_A 19 CTKTENLLGSYFPKKIS 35 (60)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHH
Confidence 56789999999999997
No 20
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.65 E-value=2e+02 Score=19.55 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=19.9
Q ss_pred cccCCCCCCcccccchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6744 4 TSTSPGRKSSANDRTVTVKLRVMVANMVVLVGGNIIGILLHTM 46 (149)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ql~~~~vl~l~~~~~G~~~~~l 46 (149)
+.++.||.+-+-.- ....+++-+..+++..++++....+
T Consensus 51 T~tTvGyGd~~P~t----~~~r~~~~~~~~~G~~~~~~~~~~i 89 (139)
T 3eff_K 51 TATTVGYGDLYPVT----LWGRLVAVVVMVAGITSFGLVTAAL 89 (139)
T ss_dssp HHTTCCCSSSCCCS----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccCCCCcCCC----cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788997543222 2334444555555555555444443
No 21
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=21.56 E-value=64 Score=18.29 Aligned_cols=17 Identities=0% Similarity=0.010 Sum_probs=14.0
Q ss_pred hhHHHhHHHHHHHhCCC
Q psy6744 132 SPVEGQFHKIYIQRHEN 148 (149)
Q Consensus 132 NeLf~~FD~la~~~~~~ 148 (149)
.++-.++|.+|++.|++
T Consensus 12 ~~l~~~l~~lA~~~~rs 28 (52)
T 2gpe_A 12 DATRERIKSAATRIDRT 28 (52)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 47788999999988874
Done!