RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6744
(149 letters)
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 37.2 bits (87), Expect = 0.001
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 70 DENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSI 116
+E +K +RLL +LP VA ++K + + ++NV+I
Sbjct: 1 EEKKKTDRLLDQLLPASVAEQLKRG--------GSPVPAESYDNVTI 39
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 32.1 bits (74), Expect = 0.097
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENVS 115
AM+M+N+I +PV+G +I ++ + V+
Sbjct: 555 AMKMENEIQAPVDGTVKEILVKEGDRVN 582
Score = 27.5 bits (62), Expect = 3.0
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 94 DIISPVEGQFHKIYIQRHENVS-------INACHKCRTQMKNDIISPVEGQFHKIYIQRH 146
+ SP+ G K+ ++ + V + A +M+N+I +PV+G +I ++
Sbjct: 524 AVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEA-----MKMENEIQAPVDGTVKEILVKEG 578
Query: 147 ENV 149
+ V
Sbjct: 579 DRV 581
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 29.8 bits (67), Expect = 0.37
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENV 114
AM+M+N+I +P +G KI ++ + V
Sbjct: 117 AMKMENEIPAPKDGVVKKILVKEGDTV 143
>gnl|CDD|185521 PTZ00235, PTZ00235, DNA polymerase epsilon subunit B; Provisional.
Length = 291
Score = 28.8 bits (64), Expect = 0.91
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 115 SINACHKCRTQMKNDIISPVEGQFHKIYIQRHEN 148
+INA + R ++N ++S + GQ H IY H+N
Sbjct: 187 TINATNNERNNLQNILVSTIVGQSH-IYPIPHDN 219
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 27.3 bits (61), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 87 VAMEMKNDIISPVEGQFHKIYIQRHENVS-------INACHKCRTQMK--NDIISPVEGQ 137
A + SP+ G +K +++ + V I A MK N+I +P +G
Sbjct: 65 AAAAGGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA-------MKMENEIEAPADGV 117
Query: 138 FHKIYIQ 144
+I ++
Sbjct: 118 VKEILVK 124
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing carboxylation,
decarboxylation, or transcarboxylation. During this
process, biotin is covalently attached to a specific
lysine.
Length = 67
Score = 26.2 bits (59), Expect = 2.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENVS 115
AM+M+N++ +PV G +I ++ + V
Sbjct: 32 AMKMENEVTAPVAGVVKEILVKEGDQVE 59
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 26.3 bits (58), Expect = 5.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENV 114
AM+M+N+I++ G I++ + V
Sbjct: 94 AMKMENEIVASSAGTVTAIHVTPGQVV 120
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 26.0 bits (58), Expect = 6.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 67 EMEDENEKLERLLLSVLPQHVAMEM 91
E+E+E +K + LL S+LP+ VA +
Sbjct: 185 ELEEEKKKTDDLLYSMLPKSVANRL 209
>gnl|CDD|182768 PRK10837, PRK10837, putative DNA-binding transcriptional regulator;
Provisional.
Length = 290
Score = 26.2 bits (58), Expect = 7.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 73 EKLERLLLSVLPQ-HVAMEMKN 93
E ++ LLLS LP+ +AME+ N
Sbjct: 199 EIVDYLLLSHLPRFELAMELGN 220
>gnl|CDD|163413 TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase,
SCO4490 family. Members of this protein family are
putative decarboxylases involved in a late stage of the
alternative pathway for menaquinone, via futalosine, as
in Streptomyces coelicolor and Helicobacter pylori
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 433
Score = 26.1 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 68 MEDE--NEKLERLLLSVLPQHVAMEMKNDIISPVEGQFH 104
ED+ + ER+ L +L Q +A E+ D P EG FH
Sbjct: 312 QEDKYLGKATERIFLPLL-QLIAPEIV-DYHMPEEGVFH 348
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.384
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,300,882
Number of extensions: 652955
Number of successful extensions: 628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 19
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.4 bits)