RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6744
(149 letters)
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 46.5 bits (111), Expect = 5e-07
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 85 QHVAMEMKNDIISPVEG-QFHKIYIQRHENVSI 116
H AMEMK DI + E FHKIYIQ+H+NVSI
Sbjct: 5 HHHAMEMKADINAKQEDMMFHKIYIQKHDNVSI 37
Score = 30.7 bits (70), Expect = 0.13
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 125 QMKNDIISPVEG-QFHKIYIQRHENV 149
+MK DI + E FHKIYIQ+H+NV
Sbjct: 10 EMKADINAKQEDMMFHKIYIQKHDNV 35
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 30.8 bits (70), Expect = 0.035
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 67 EMEDENEKLERLLLSVLPQHVAMEMKN 93
+EDE +K + LL SVLP VA E+++
Sbjct: 39 ALEDEKKKTDTLLYSVLPPSVANELRH 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.077
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 28/87 (32%)
Query: 63 AARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINACHKC 122
RL+ D K M+ + + + ++ E V K
Sbjct: 95 RKRLQELDAASK---------------VMEQEWREKAKKDLEEWNQRQSEQVE-----KN 134
Query: 123 RTQMKNDIISPVEGQFHKIYIQRHENV 149
+ + + F++ Q ++
Sbjct: 135 KINNRIA-----DKAFYQ---QPDADI 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.13
Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 30/138 (21%)
Query: 16 DRTVTVKLRVMVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKL 75
+ VT L + L + + K+ L L+ + L
Sbjct: 274 FKQVTDFLSAATTTHISLDH-------HSMTLTPDEVKSLL------LKYLDCRPQ--DL 318
Query: 76 ERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVSINACHKCRTQMKN--DIISP 133
R +L+ P+ +++ I + + + +N C K T +++ +++ P
Sbjct: 319 PREVLTTNPRRLSI-----I-----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 134 VEGQ--FHKIYIQRHENV 149
E + F ++ + +
Sbjct: 369 AEYRKMFDRLSVFP-PSA 385
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 27.3 bits (61), Expect = 2.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENVS 115
AM+M+ + SP+EG K+++ + +
Sbjct: 682 AMKMETVVTSPMEGTVRKVHVTKDMTLE 709
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 25.7 bits (57), Expect = 2.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENVSINA 118
AM+M+N+I SP +G +I ++ E V
Sbjct: 38 AMKMENEIPSPRDGVVKRILVKEGEAVDTGQ 68
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.1 bits (57), Expect = 4.8
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 103 FHKIYIQRHENVSINACH--KCRTQMKNDI--ISPVEG 136
+ ++ + +N +T+M I + EG
Sbjct: 246 YTRVLANKIPKFQVNCVCPGLVKTEMNYGIGNYTAEEG 283
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 25.1 bits (55), Expect = 5.0
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENVSINA 118
AM+M++ I SP +G K++ + + +
Sbjct: 47 AMKMEHTIKSPKDGTVKKVFYREGAQANRHT 77
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and
melibiose metabolism, dimerization domain, coiled-coil
dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Length = 57
Score = 23.9 bits (51), Expect = 9.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 67 EMEDENEKLERLLLSVLPQH-VAMEMKNDIISPVEGQFHKIYIQRHEN 113
E+E E+LE+L L + P+ + M +K D + +E +++Q + N
Sbjct: 7 EVESRLERLEQLFLLIFPREDLDMILKMDSLRDIEALLTGLFVQDNVN 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 24.1 bits (53), Expect = 9.6
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 88 AMEMKNDIISPVEGQFHKIYIQRHENVSINA 118
AM+M+ +I +P +G+ K+ ++ + V
Sbjct: 41 AMKMETEINAPTDGKVEKVLVKERDAVQGGQ 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.384
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,170,058
Number of extensions: 121317
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 15
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)