RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6744
         (149 letters)



>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 30.3 bits (67), Expect = 0.065
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 102 QFHKIYIQRHENVSI 116
            FHKIYIQ+H+NVSI
Sbjct: 3   MFHKIYIQKHDNVSI 17



 Score = 27.2 bits (59), Expect = 0.61
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 137 QFHKIYIQRHENV 149
            FHKIYIQ+H+NV
Sbjct: 3   MFHKIYIQKHDNV 15


>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain
          (RecB), C-terminal domain {Escherichia coli [TaxId:
          562]}
          Length = 276

 Score = 27.4 bits (60), Expect = 0.79
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 35 GGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQ 85
           G   G  LH++ E       +D    +  +LE+     + E +L   +  
Sbjct: 49 RGASPGTFLHSLFEDLDFTQPVDPNW-VREKLELGGFESQWEPVLTEWITA 98


>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 52

 Score = 23.5 bits (50), Expect = 3.2
 Identities = 6/28 (21%), Positives = 7/28 (25%)

Query: 102 QFHKIYIQRHENVSINACHKCRTQMKND 129
           Q  +    R        C  CR     D
Sbjct: 25  QICRFCWHRIRTDENGLCPACRKPYPED 52


>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 23.6 bits (50), Expect = 4.5
 Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 95  IISPVEGQFHKIYIQRHENVSINACHKCRTQM-KNDIISPV 134
           +++       +  +          C +C T + K++    +
Sbjct: 22  MVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62


>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
           acetyltransferase {Bacillus stearothermophilus [TaxId:
           1422]}
          Length = 80

 Score = 23.6 bits (51), Expect = 5.4
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 89  MEMKNDIISPVEGQFHKIYIQRHENVSINA 118
            +   +I SPV+G+  +I +      ++  
Sbjct: 41  DKAVVEIPSPVKGKVLEILVPEGTVATVGQ 70


>d1exta2 g.24.1.1 (A:72-115) Tumor necrosis factor (TNF) receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 44

 Score = 22.6 bits (48), Expect = 7.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 118 ACHKCRTQMKNDIISP 133
           +C KCR +M    IS 
Sbjct: 1   SCSKCRKEMGQVEISS 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,713
Number of extensions: 21988
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 10
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.0 bits)