BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy675
(1175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 486 VLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEAN 545
V E N + N + G + T +H + N + G + + L +L + N +
Sbjct: 184 VFENNVAYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLAL-PSNILIDGG 242
Query: 546 DIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSN 596
++N G +K ++ T+ + +IH + G+ V+ Q +DN+IH N
Sbjct: 243 AYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDN 293
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 302 LIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVG--------LIEENE 353
+ E+N Y N G + TS+ V N + +G V ++G+ LI+
Sbjct: 184 VFENNVAYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGA 243
Query: 354 VYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDI 400
Y N GV + S L+ IH GV Y ++ DN I
Sbjct: 244 YYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQI 290
>pdb|3VST|A Chain A, The Complex Structure Of Xylc With Tris
pdb|3VST|B Chain B, The Complex Structure Of Xylc With Tris
pdb|3VST|C Chain C, The Complex Structure Of Xylc With Tris
pdb|3VST|D Chain D, The Complex Structure Of Xylc With Tris
pdb|3VSU|A Chain A, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|B Chain B, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|C Chain C, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|D Chain D, The Complex Structure Of Xylc With Xylobiose
pdb|3VSV|A Chain A, The Complex Structure Of Xylc With Xylose
pdb|3VSV|B Chain B, The Complex Structure Of Xylc With Xylose
pdb|3VSV|C Chain C, The Complex Structure Of Xylc With Xylose
pdb|3VSV|D Chain D, The Complex Structure Of Xylc With Xylose
Length = 638
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 280 IRRNEIYN-------GHQGGVY--IFGEG-RGLIEHNNIYGNALAGIQIRTSSDPIVRHN 329
IR N IY+ GH GGV+ I+ + YG+ +AGI++ + D + HN
Sbjct: 311 IRNNTIYDCGQNAIVGHLGGVFSEIYNNHIYNIALKREFYGHEIAGIKLHAAIDVQIHHN 370
Query: 330 KIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGK-------Q 382
+IH G+++ + G ++ N V++ P L + I S + Q
Sbjct: 371 RIHDCSL-GLWLDWEAQGTRVSKNLFYNNNRDVFVEVSHGPYLVDHNILSSEYAIDNMSQ 429
Query: 383 VGVYFYDNGHGKLEDNDIFN 402
G Y + GK+ + N
Sbjct: 430 GGAYINNLIAGKMNQRKVLN 449
>pdb|3AHM|A Chain A, Pz Peptidase A
pdb|3AHM|B Chain B, Pz Peptidase A
pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
Length = 564
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 957 WVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCE 1016
+++NY P + N D+ + T + GH F ++ +R +E+ PT+ CE
Sbjct: 331 YIENYKAPFIFSNFTGTSGDIDVLTHEAGHAF----QVYESR--HYEIPEYNWPTLEACE 384
Query: 1017 IH 1018
IH
Sbjct: 385 IH 386
>pdb|3SKS|A Chain A, Crystal Structure Of A Putative Oligoendopeptidase F From
Bacillus Anthracis Str. Ames
Length = 567
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 957 WVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCE 1016
+++NY P + N D+ + T + GH F ++ +R FE+ PT CE
Sbjct: 334 YIENYKAPFIFSNFNGTSGDIDVLTHEAGHAF----QVYESR--KFEIPEYNWPTYEACE 387
Query: 1017 IH 1018
IH
Sbjct: 388 IH 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,919,763
Number of Sequences: 62578
Number of extensions: 1763450
Number of successful extensions: 3496
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3472
Number of HSP's gapped (non-prelim): 31
length of query: 1175
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1065
effective length of database: 8,089,757
effective search space: 8615591205
effective search space used: 8615591205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)