RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy675
(1175 letters)
>gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region. This region
contains a parallel beta helix region that shares some
similarity with Pectate lyases.
Length = 157
Score = 92.6 bits (230), Expect = 1e-21
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Query: 710 SGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLK 769
SG+ I SN I N I G+ + +E N I +N G++I + SN T+
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 770 RNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEI 829
N I + GGI + +E N I N G+ +S S+ + N I + G+ +
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 830 TNNA-TATLEDNQIFNNRFGGLCLASGAKNAYL 861
+++ T+ +N I NN G+ L G+ N +
Sbjct: 120 EDSSNNVTITNNTISNNGGYGIYLIGGSSNNTI 152
Score = 91.0 bits (226), Expect = 4e-21
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Query: 1000 AGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIR 1059
+G + +N T+ + I + GIY+ + +N I +N G++I S SN TI
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 1060 RNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYV 1119
N I N GG+Y+ G IE+N I N GI + SS+ + +N I + G+ +
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 1120 HEKGVGLIEENEGFFEANDIHNNRIAGFEVKAGANPTVVSG 1160
+ + N N I NN G + G++ ++
Sbjct: 120 EDSSNNVTITN------NTISNNGGYGIYLIGGSSNNTITN 154
Score = 85.6 bits (212), Expect = 3e-19
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 314 AGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLR 373
+GI I SS+ + +N I + G+Y+ IE N + N G++I+ GS +
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYIS-GSNNTIS 59
Query: 374 RNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLV 433
N I + G+Y + + +E+N I N+ G+ + SN I N I G+++
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 434 YNGGLGL-LEQNEIFDNAMAGVWIKTES-NPTLKRNKI 469
+ + + N I +N G+++ S N T+ N I
Sbjct: 120 EDSSNNVTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 84.9 bits (210), Expect = 6e-19
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 406 SGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLK 465
SG+ I SN I N I G+ + +E N I +N G++I + SN T+
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 466 RNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEI 525
N I + GGI + +E N I N G+ +S S+ + N I + G+ +
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 526 TNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVH 567
++ + + N N I NN G + G++ +
Sbjct: 120 EDSSNNVTITN--------NTISNNGGYGIYLIGGSSNNTIT 153
Score = 84.1 bits (208), Expect = 1e-18
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 274 SNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHH 333
+SN TI N I N G+YI G IE+N I N GI I + S+ + +N I +
Sbjct: 7 GSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTISNNTISN 65
Query: 334 GQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHG 393
GG+Y+ IE N + N G++++ S + N I + G+ D+ +
Sbjct: 66 NGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVLEDSSNN 125
Query: 394 -KLEDNDIFNHLYSGVQIRTGS-NPIIRGNKI 423
+ +N I N+ G+ + GS N I N I
Sbjct: 126 VTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 83.7 bits (207), Expect = 1e-18
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 553 AGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIR 612
+G + +N T+ + I + GIY+ + +N I +N G++I S SN TI
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 613 RNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYV 672
N I N GG+Y+ G IE+N I N GI + SS+ + +N I + G+ +
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 673 HEKGVGLIEEN 683
+ + N
Sbjct: 120 EDSSNNVTITN 130
Score = 83.3 bits (206), Expect = 2e-18
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Query: 360 AGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIR 419
+G+ I S + N I + G+Y + + +E+N I N+ G+ I +GSN I
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 420 GNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICI 479
N I GG+ + +E N I +N G+++ SN T++ N I + GI +
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 480 FNGGKGV-LEENDIFRNAQAGV-LISTQSHPMLRRNRI 515
+ V + N I N G+ LI S+ + N I
Sbjct: 120 EDSSNNVTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 81.8 bits (202), Expect = 6e-18
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 915 CASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHG 974
++ T+ + IS+ G+Y+ + E+N I+ N GI++ N + N I +
Sbjct: 8 SSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYISGS-NNTISNNTISNN 66
Query: 975 RDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLG- 1033
GI+ + + E N I NN G + +N T+ + I + GI + ++
Sbjct: 67 GGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVLEDSSNNV 126
Query: 1034 QFIDNRIHSNNFAGVWI-TSNSNPTIRRNEI 1063
+N I +N G+++ +SN TI N I
Sbjct: 127 TITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 81.8 bits (202), Expect = 6e-18
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 215 GLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPIS 274
G+ + + E+N IS N GI++ +N + N I + GI+ IS
Sbjct: 2 GILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIY---------IS 52
Query: 275 NSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHG 334
SN TI N I N GG+Y+ G IE+N I N GI + SS+ + +N I +
Sbjct: 53 GSNNTISNNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNN 112
Query: 335 QHGGVYVHEKGVGL-IEENEVYANTLAGVWITTGSA 369
G+ + + + I N + N G+++ GS+
Sbjct: 113 GGYGIVLEDSSNNVTITNNTISNNGGYGIYLIGGSS 148
Score = 79.1 bits (195), Expect = 5e-17
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 498 AGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEV 557
+G+LI+ S+ + N I + G+ I + N E N I NN G +
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGS---------SNITIENNTITNNGGYGIYI 51
Query: 558 KAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIY 617
G+N T+ + I + GGIY+ + +N I +N G++++++SN TI N I
Sbjct: 52 S-GSNNTISNNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTIS 110
Query: 618 NGHQGGVYIFGEGRGL-IEHNNIYGNALAGIQI-RTSSDPIVRHNKI 662
N G+ + + I +N I N GI + SS+ + +N I
Sbjct: 111 NNGGYGIVLEDSSNNVTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 76.0 bits (187), Expect = 6e-16
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 22/177 (12%)
Query: 599 AGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVR 658
+G+ I +SN TI N I N G+YI G IE+N I N GI I + S+ +
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 659 HNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGS 718
+N I + GG+Y+ IE N + N G+ + S
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENN-------------------GGYGIYLSNSS 100
Query: 719 NPIIRGNKIWGGQNGGVLVYNGGLGL-LEQNEIFDNAMAGVWIKTES-NPTLKRNKI 773
N I N I G+++ + + + N I +N G+++ S N T+ N I
Sbjct: 101 NNTIENNTISNNGGYGIVLEDSSNNVTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 69.1 bits (169), Expect = 2e-13
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 645 AGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPR 704
+GI I SS+ + +N I + G+Y+ IE N N
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNG--------------- 45
Query: 705 ARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTES 764
G+ I +GSN I N I GG+ + +E N I +N G+++ S
Sbjct: 46 ----GYGIYI-SGSNNTISNNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSS 100
Query: 765 NPTLKRNKIFDGRDGGICIFNGGKGV-LEENDIFRNAQAGV-LISTQSHPMLRRNRI 819
N T++ N I + GI + + V + N I N G+ LI S+ + N I
Sbjct: 101 NNTIENNTISNNGGYGIVLEDSSNNVTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 66.4 bits (162), Expect = 2e-12
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 165 YCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQG 224
+ + + TI++ I + G + S T+ + I++ G+Y++
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNI---TIENNTITNNGGYGIYISGSNNT 57
Query: 225 LYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNE 284
+ +N IS N GI+++ +N + N I + GI+ + +SN TI N
Sbjct: 58 IS-NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSN--------SSNNTIENNT 108
Query: 285 IYNGHQGGVYIFGEGRGL-IEHNNIYGNALAGIQI-RTSSDPIVRHNKI 331
I N G+ + + I +N I N GI + SS+ + +N I
Sbjct: 109 ISNNGGYGIVLEDSSNNVTITNNTISNNGGYGIYLIGGSSNNTITNNTI 157
Score = 62.5 bits (152), Expect = 3e-11
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 157 STVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGL 216
+T+ ++ + +G + TI++ I + G + S T+ + IS+ G+
Sbjct: 16 NTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYISGSNN----TISNNTISNNGGGGI 71
Query: 217 YVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNS 276
Y+ + E+N I N GI++ N +N + N I + GI D+ +
Sbjct: 72 YLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVLEDSS-------N 124
Query: 277 NPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNI 308
N TI N I N G+Y+ G NN
Sbjct: 125 NVTITNNTISNNGGYGIYLIGGSSNNTITNNT 156
Score = 61.0 bits (148), Expect = 1e-10
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 874 STVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGL 933
+T+ ++ + +G + TI++ I + G + S T+ + IS+ G+
Sbjct: 16 NTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYISGSNN----TISNNTISNNGGGGI 71
Query: 934 YVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGF-FEAN 992
Y+ + E+N I N GI++ N +N + N I + GI D+ + N
Sbjct: 72 YLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVLEDSSNNVTITNN 131
Query: 993 DIHNNRIAGFEVKAGANPTVVH 1014
I NN G + G++ +
Sbjct: 132 TISNNGGYGIYLIGGSSNNTIT 153
>gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD). NosD is
a periplasmic protein which is thought to insert copper
into the exported reductase apoenzyme (NosZ). This region
forms a parallel beta helix domain.
Length = 238
Score = 55.4 bits (134), Expect = 4e-08
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 955 GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVH 1014
GI++ N +N ++ N I + RD GI+ ++ + N I NNR G + +N T+ +
Sbjct: 18 GIYLSNSSNNVIINNTIINVRD-GIYLNNSSNNTITNNTISNNR-YGIHLMYSSNNTISN 75
Query: 1015 CEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIF 1074
GI + + +N I SNN G+ ++ +SN TI N I N +G ++++
Sbjct: 76 NTAS-NNGYGIALMNSSNNTIRNNTI-SNNTYGILLSDSSNNTISNNTISNNGKG-IFLY 132
Query: 1075 GEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHN 1107
I N I N GI + S+ ++ +N
Sbjct: 133 NSSNNTITGNRISSNG-IGIHLAGSNGNLIYNN 164
Score = 51.6 bits (124), Expect = 5e-07
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 276 SNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQ 335
SN I N I + G + NN N GI + SS+ + +N I + +
Sbjct: 1 SNNAISGNTIGIYNGRGGIYLSNSSNNVIINNTIINVRDGIYLNNSSNNTITNNTISNNR 60
Query: 336 HGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKL 395
+ G+++ I N N G+ + S +R N I S G+ D+ + +
Sbjct: 61 Y-GIHLMYSSNNTISNNTASNNG-YGIALMNSSNNTIRNNTI-SNNTYGILLSDSSNNTI 117
Query: 396 EDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDN 449
+N I N+ G+ + SN I GN+I G L + G N I++N
Sbjct: 118 SNNTISNNGK-GIFLYNSSNNTITGNRISSNGIGIHLAGSNG------NLIYNN 164
Score = 49.7 bits (119), Expect = 3e-06
Identities = 54/224 (24%), Positives = 82/224 (36%), Gaps = 33/224 (14%)
Query: 414 SNPIIRGNKIW-GGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDG 472
SN I GN I GG+ + N ++ N I N G+++ SN T+ N I +
Sbjct: 1 SNNAISGNTIGIYNGRGGIYLSNSSNNVIINNTI-INVRDGIYLNNSSNNTITNNTISNN 59
Query: 473 RDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFD-------GFAAGVEI 525
R GI + + N N G+ + S+ +R N I + ++ I
Sbjct: 60 R-YGIHLMYSSNNTISNNTASNNG-YGIALMNSSNNTIRNNTISNNTYGILLSDSSNNTI 117
Query: 526 TNTPLSNLLINKENGFF----EANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVH 581
+N N + N G F N I NRI+ IH + G ++
Sbjct: 118 SN----NTISNNGKGIFLYNSSNNTITGNRISSNG-----------IGIHLAGSNGNLIY 162
Query: 582 ENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVY 625
N FI+N + T NS T N + + GG Y
Sbjct: 163 NN---YFINNTENVKYVGSNGNTWNSTKTAGYNIVGGPYIGGNY 203
Score = 48.5 bits (116), Expect = 7e-06
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Query: 711 GVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKR 770
G+ + SN +I N I ++G L + + N N G+ + SN T+
Sbjct: 18 GIYLSNSSNNVIINNTIINVRDGIYLNNSSNNTIT--NNTISNNRYGIHLMYSSNNTISN 75
Query: 771 NKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEIT 830
N + GI + N + N N G+L+S S+ + N I + G+ +
Sbjct: 76 NTASNN-GYGIALMNSSNNTIRNN-TISNNTYGILLSDSSNNTISNNTISNN-GKGIFLY 132
Query: 831 NNATATLEDNQIFNNRFGGLCLASG 855
N++ T+ N+I +N G S
Sbjct: 133 NSSNNTITGNRISSNGIGIHLAGSN 157
Score = 47.4 bits (113), Expect = 1e-05
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 29/193 (15%)
Query: 607 SNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQ 666
SN I N I + G + NN N GI + SS+ + +N I + +
Sbjct: 1 SNNAISGNTIGIYNGRGGIYLSNSSNNVIINNTIINVRDGIYLNNSSNNTITNNTISNNR 60
Query: 667 HGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNK 726
+ G+++ I N N G+ + SN IR N
Sbjct: 61 Y-GIHLMYSSNNTISNNTASNN--------------------GYGIALMNSSNNTIRNNT 99
Query: 727 IWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNG 786
I G+L+ + + N I +N G+++ SN T+ N+I GI +
Sbjct: 100 ISNNTY-GILLSDSSNNTISNNTISNNG-KGIFLYNSSNNTITGNRI-SSNGIGIHLAGS 156
Query: 787 GKGVLEENDIFRN 799
N I+ N
Sbjct: 157 -----NGNLIYNN 164
Score = 45.8 bits (109), Expect = 5e-05
Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 38/197 (19%)
Query: 446 IFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQ 505
N G+++ SN + N I + RDG N N+ N + G+ +
Sbjct: 11 GIYNGRGGIYLSNSSNNVIINNTIINVRDGIY--LNNSSNNTITNNTISNNRYGIHLMYS 68
Query: 506 SHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTV 565
S+ + N + G+ + N+ N I NN I+
Sbjct: 69 SNNTISNNTASNN-GYGIALMNS--------------SNNTIRNNTISNNTY-------- 105
Query: 566 VHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVY 625
GI + ++ +N I SNN G+++ ++SN TI N I + + G++
Sbjct: 106 -----------GILLSDSSNNTISNNTI-SNNGKGIFLYNSSNNTITGNRISS-NGIGIH 152
Query: 626 IFGEGRGLIEHNNIYGN 642
+ G LI +N N
Sbjct: 153 LAGSNGNLIYNNYFINN 169
Score = 45.4 bits (108), Expect = 7e-05
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 707 KTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNP 766
G+ + SN I N I + G + + + N +N G+ + SN
Sbjct: 36 NVRDGIYLNNSSNNTITNNTISNNRYG-IHLMYSSNNTISNNTASNNG-YGIALMNSSNN 93
Query: 767 TLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAG 826
T++ N I + G I + + + N I N + G+ + S+ + NRI
Sbjct: 94 TIRNNTISNNTYG-ILLSDSSNNTISNNTISNNGK-GIFLYNSSNNTITGNRI------- 144
Query: 827 VEITNNA----TATLEDNQIFNNRF 847
++N A N I+NN F
Sbjct: 145 ---SSNGIGIHLAGSNGNLIYNNYF 166
Score = 44.3 bits (105), Expect = 1e-04
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 718 SNPIIRGNKIW-GGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDG 776
SN I GN I GG+ + N ++ N I N G+++ SN T+ N I +
Sbjct: 1 SNNAISGNTIGIYNGRGGIYLSNSSNNVIINNTI-INVRDGIYLNNSSNNTITNNTISNN 59
Query: 777 RDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATAT 836
R GI + + N N G+ + S+ +R N I + G+ +++++ T
Sbjct: 60 R-YGIHLMYSSNNTISNNTASNNG-YGIALMNSSNNTIRNNTISNN-TYGILLSDSSNNT 116
Query: 837 LEDNQIFNNRFG 848
+ +N I NN G
Sbjct: 117 ISNNTISNNGKG 128
Score = 43.5 bits (103), Expect = 3e-04
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 259 DVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQI 318
+ G I+ ++SN I N I N G +Y+ I +N I N GI +
Sbjct: 8 NTIGIYNGRGGIYLSNSSNNVIINNTIINVRDG-IYLNNSSNNTITNNTISNNR-YGIHL 65
Query: 319 RTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 378
SS+ + +N G+ + I N + NT G+ ++ S + N I
Sbjct: 66 MYSSNNTISNNTA-SNNGYGIALMNSSNNTIRNNTISNNTY-GILLSDSSNNTISNNTI- 122
Query: 379 SGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGN 421
S G++ Y++ + + N I ++ G+ + + +I N
Sbjct: 123 SNNGKGIFLYNSSNNTITGNRISSNGI-GIHLAGSNGNLIYNN 164
Score = 43.5 bits (103), Expect = 3e-04
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 1017 IHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGE 1076
+ GGIY+ + I+N I N G+++ ++SN TI N I N + G+++
Sbjct: 11 GIYNGRGGIYLSNSSNNVIINNTI-INVRDGIYLNNSSNNTITNNTISNN-RYGIHLMYS 68
Query: 1077 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENE----- 1131
I +N N GI + SS+ +R+N I + + G+ + + I N
Sbjct: 69 SNNTISNNTASNNG-YGIALMNSSNNTIRNNTISNNTY-GILLSDSSNNTISNNTISNNG 126
Query: 1132 -GFF----EANDIHNNRIAG 1146
G F N I NRI+
Sbjct: 127 KGIFLYNSSNNTITGNRISS 146
Score = 42.0 bits (99), Expect = 9e-04
Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 38/189 (20%)
Query: 215 GLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPIS 274
G + N N GI++ N +N + N I + R GI +
Sbjct: 17 GGIYLSNSSNNVIINNTIINVRDGIYLNNSSNNTITNNTISNNR-YGIH---------LM 66
Query: 275 NS-NPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHH 333
S N TI N N G NN N GI + SS+ + +N I
Sbjct: 67 YSSNNTISNNTASNNGYG--IALMNSSNNTIRNNTISNNTYGILLSDSSNNTISNNTI-- 122
Query: 334 GQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHG 393
+N G+++ S + NRI S +G++ +
Sbjct: 123 ----------------------SNNGKGIFLYNSSNNTITGNRI-SSNGIGIHLAGSNGN 159
Query: 394 KLEDNDIFN 402
+ +N N
Sbjct: 160 LIYNNYFIN 168
Score = 41.6 bits (98), Expect = 0.001
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 570 IHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGE 629
+ GGIY+ + I+N I N G+++ ++SN TI N I N + G+++
Sbjct: 11 GIYNGRGGIYLSNSSNNVIINNTI-INVRDGIYLNNSSNNTITNNTISNN-RYGIHLMYS 68
Query: 630 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQ 689
I +N N GI + SS+ +R+N I + + G+ + + I N N
Sbjct: 69 SNNTISNNTASNNG-YGIALMNSSNNTIRNNTISNNTY-GILLSDSSNNTISNNTISNNG 126
Query: 690 LLIFI 694
IF+
Sbjct: 127 KGIFL 131
Score = 36.2 bits (84), Expect = 0.071
Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 24/164 (14%)
Query: 590 DNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQI 649
+ N G++++++SN I N I N G +Y+ I +N I N GI +
Sbjct: 8 NTIGIYNGRGGIYLSNSSNNVIINNTIINVRDG-IYLNNSSNNTITNNTISNNR-YGIHL 65
Query: 650 RTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTY 709
SS+ + +N G+ + I N
Sbjct: 66 MYSSNNTISNNTA-SNNGYGIALMNSSNNTIRNN--------------------TISNNT 104
Query: 710 SGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDN 753
G+ + SN I N I G+ +YN + N I N
Sbjct: 105 YGILLSDSSNNTISNNTISNNGK-GIFLYNSSNNTITGNRISSN 147
Score = 32.7 bits (75), Expect = 0.84
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 14/161 (8%)
Query: 919 TLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVG 978
T+ + IS+ G+++ + +N S N GI + N +N +R N I + G
Sbjct: 50 TITNNTISNN-RYGIHLMYSSNNTISNNTASNNG-YGIALMNSSNNTIRNNTISNNT-YG 106
Query: 979 IFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEI-------HHGQTGGIYVHENG 1031
I D+ + N I NN G + +N T+ I H + G ++ N
Sbjct: 107 ILLSDSSNNTISNNTISNNG-KGIFLYNSSNNTITGNRISSNGIGIHLAGSNGNLIYNN- 164
Query: 1032 LGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVY 1072
FI+N + T NS T N + + GG Y
Sbjct: 165 --YFINNTENVKYVGSNGNTWNSTKTAGYNIVGGPYIGGNY 203
Score = 32.3 bits (74), Expect = 1.2
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 1054 SNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQ 1113
SN I N I + G + NN N GI + SS+ + +N I + +
Sbjct: 1 SNNAISGNTIGIYNGRGGIYLSNSSNNVIINNTIINVRDGIYLNNSSNNTITNNTISNNR 60
Query: 1114 HGGVYVHEKGVGLIEENE------GFF----EANDIHNNRI 1144
+ G+++ I N G N I NN I
Sbjct: 61 Y-GIHLMYSSNNTISNNTASNNGYGIALMNSSNNTIRNNTI 100
>gnl|CDD|214788 smart00722, CASH, Domain present in carbohydrate binding proteins and
sugar hydrolses.
Length = 153
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 984 NGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSN 1043
G + D + N T EI+ G GI V G FI NRI N
Sbjct: 62 TGIYVSASGDPVIQNDGTGKNLIIDNVTFNGTEINSG--AGIVVTAGSEGLFIGNRIIGN 119
Query: 1044 NFA---GVWITSNSNPTIRRNEIYNGHQGGVYIF 1074
A G +++ +S + N IY+ ++ G+ +
Sbjct: 120 YVATGDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
Score = 41.0 bits (95), Expect = 7e-04
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 539 NGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNF 598
+ D + N T EI+ G GI V G FI NRI N
Sbjct: 64 IYVSASGDPVIQNDGTGKNLIIDNVTFNGTEINSG--AGIVVTAGSEGLFIGNRIIGNYV 121
Query: 599 A---GVWITSNSNPTIRRNEIYNGHQGGVYIF 627
A G +++ +S + N IY+ ++ G+ +
Sbjct: 122 ATGDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
Score = 31.7 bits (71), Expect = 1.1
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 390 NGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDN 449
G D + N G +I G G++V G GL N I N
Sbjct: 62 TGIYVSASGDPVIQNDGTGKNLIIDNVTFNGTEINSG--AGIVVTAGSEGLFIGNRIIGN 119
Query: 450 AMA---GVWIKTESNPTLKRNKIFDGRDGGICIF 480
+A G ++ S L N+I+D GI +
Sbjct: 120 YVATGDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
Score = 29.4 bits (65), Expect = 6.3
Identities = 29/152 (19%), Positives = 41/152 (26%), Gaps = 11/152 (7%)
Query: 383 VGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIR------GNKIWGGQNGGVLVYNG 436
G G I GS ++ G GG
Sbjct: 3 NGTVLELLRGAVHYMYTSDIGGSGGAVIDMGSGRGSNITINSNDVRVDGVTIGGDGNAVT 62
Query: 437 GLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNA 496
G+ + + N T N GI + G +G+ N I N
Sbjct: 63 GIYVSASGDPVIQNDGTGKNLIIDNVT--FNGTEINSGAGIVVTAGSEGLFIGNRIIGNY 120
Query: 497 QA---GVLISTQSHPMLRRNRIFDGFAAGVEI 525
A G +S S L NRI+D G+ +
Sbjct: 121 VATGDGNYLSDSSGGDLIGNRIYDNNRDGIAV 152
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family
maturation protein NosD. Members of this family include
NosD, a repetitive periplasmic protein required for the
maturation of the copper-containing enzyme nitrous-oxide
reductase. NosD appears to be part of a complex with
NosF (an ABC transporter family ATP-binding protein) and
NosY (a six-helix transmembrane protein in the ABC-2
permease family). However, NosDFY-like complexes appear
to occur also in species whose copper requiring enzymes
are something other than nitrous-oxide reductase.
Length = 377
Score = 44.9 bits (107), Expect = 2e-04
Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 49/239 (20%)
Query: 292 GVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIH------HGQHG-GVYV-HE 343
G+ + R +IE+N + N L GI ++ + D ++ +N+I G G+++ +
Sbjct: 77 GIKVEKADRAVIENNRLEDN-LFGIYLQEAHDSLIENNRITGKPDLRSNDRGNGIHLWNS 135
Query: 344 KGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 403
G +IE N V G++I ++R N H+ + G++F + +EDN +F
Sbjct: 136 PGN-VIEGNTVR-GGRDGIYIEFSHHNLIRNNTSHNLR-YGLHFMYSNDNLVEDN-VFRG 191
Query: 404 LYSGVQIRTGSNPIIRGNKI---WGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTES 460
G + +RGN WG G+L+ EI +
Sbjct: 192 NSVGYALMYSKRLTVRGNVFLNNWGDAGYGILL----------KEI-------------N 228
Query: 461 NPTLKRNKIFDGRDGGICIF--NGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFD 517
+ ++ N + +F N + V +ND F G+ RNR
Sbjct: 229 DSEIEGNTV---LGNTKGLFIDNSPRNVFRDND-FEYNGIGI----HFTAGSERNRFEG 279
Score = 43.0 bits (102), Expect = 6e-04
Identities = 78/404 (19%), Positives = 135/404 (33%), Gaps = 126/404 (31%)
Query: 74 IQAALD---HGDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAPGNVAESVILERDTE 130
+Q A+D GD + + G Y+G +V+D + +IG +++ + +
Sbjct: 1 LQEAIDAARPGDTI-------RLAPGTYKG-NIVIDKPLTLIGEG------GAVIDGEGK 46
Query: 131 STVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRST----- 185
TV+ ++ AP TI+ +R++
Sbjct: 47 GTVITIK-----------------APDV-----------------TIEGLTVRNSGTSLT 72
Query: 186 ------SVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEIS-----RN 234
V A V + + + D G+Y+ + L E+N I+ R+
Sbjct: 73 EDDAGIKVEKADRAV--------IENNRLEDNL-FGIYLQEAHDSLIENNRITGKPDLRS 123
Query: 235 ALAG----IWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQ 290
G +W ++ N + GRD GI+ + H + IR N +N
Sbjct: 124 NDRGNGIHLWNSPGN--VIEGNTVRGGRD-GIY-IEFSH-------HNLIRNNTSHNLRY 172
Query: 291 GGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIE 350
G +++ L+E N GN+ G + S VR N + Y G+ L E
Sbjct: 173 GLHFMYS-NDNLVEDNVFRGNS-VGYALMYSKRLTVRGNVFLNNWGDAGY----GILLKE 226
Query: 351 --ENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYS-- 406
++E+ NT+ G G++ ++ DND Y+
Sbjct: 227 INDSEIEGNTVLGNTK-------------------GLFIDNSPRNVFRDNDF---EYNGI 264
Query: 407 GVQIRTGS-NPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDN 449
G+ GS GN G N + Y G F N
Sbjct: 265 GIHFTAGSERNRFEGNAFIG--NREQVKYVGTRSNEWSENGFGN 306
Score = 38.3 bits (90), Expect = 0.021
Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 53/239 (22%)
Query: 384 GVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNG-------GVLVYNG 436
G+ +E+N + ++L+ G+ ++ + +I N+I G + G+ ++N
Sbjct: 77 GIKVEKADRAVIENNRLEDNLF-GIYLQEAHDSLIENNRITGKPDLRSNDRGNGIHLWNS 135
Query: 437 GLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNA 496
++E N + G++I+ + ++ N + R G +++ V E+++FR
Sbjct: 136 PGNVIEGNTV-RGGRDGIYIEFSHHNLIRNNTSHNLRYGLHFMYSNDNLV--EDNVFRGN 192
Query: 497 QAGVLISTQSHPMLRRNRIFDG-----------FAAGVEITNTPLSNLLINKENGFF--- 542
G + +R N + EI N ++ G F
Sbjct: 193 SVGYALMYSKRLTVRGNVFLNNWGDAGYGILLKEINDSEIEG----NTVLGNTKGLFIDN 248
Query: 543 -EANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAG 600
N +N I GI+ NR N F G
Sbjct: 249 SPRNVFRDNDFEY-------------NGI------GIHFTAGS----ERNRFEGNAFIG 284
Score = 35.6 bits (83), Expect = 0.14
Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 33/213 (15%)
Query: 919 TLRHCDI------SDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIH 972
T+ + ++ G+ V + + E+N + + L GI+++ + ++ N I
Sbjct: 58 TIEGLTVRNSGTSLTEDDAGIKVEKADRAVIENNRL-EDNLFGIYLQEAHDSLIENNRIT 116
Query: 973 HGRDV-------GIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTG-- 1023
D+ GI +++ E N + R G ++ + + + H+ + G
Sbjct: 117 GKPDLRSNDRGNGIHLWNSPGNVIEGNTVRGGR-DGIYIEFSHHNLIRNNTSHNLRYGLH 175
Query: 1024 GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGL--- 1080
+Y ++N DN N+ G + + T+R N N G G L
Sbjct: 176 FMYSNDN---LVEDNVFRGNS-VGYALMYSKRLTVRGNVFLNNWGD----AGYGILLKEI 227
Query: 1081 ----IEHNNIYGNALAGIQIRTSSDPIVRHNKI 1109
IE N + GN G+ I S + R N
Sbjct: 228 NDSEIEGNTVLGNT-KGLFIDNSPRNVFRDNDF 259
Score = 35.3 bits (82), Expect = 0.16
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 577 GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIY-------NGHQGGVYIFGE 629
GI V + +NR+ +N G+++ + I N I N G++++
Sbjct: 77 GIKVEKADRAVIENNRLE-DNLFGIYLQEAHDSLIENNRITGKPDLRSNDRGNGIHLWNS 135
Query: 630 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHG 668
+IE N + G GI I S ++R+N H+ ++G
Sbjct: 136 PGNVIEGNTVRG-GRDGIYIEFSHHNLIRNNTSHNLRYG 173
Score = 35.3 bits (82), Expect = 0.16
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 1024 GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIY-------NGHQGGVYIFGE 1076
GI V + +NR+ +N G+++ + I N I N G++++
Sbjct: 77 GIKVEKADRAVIENNRLE-DNLFGIYLQEAHDSLIENNRITGKPDLRSNDRGNGIHLWNS 135
Query: 1077 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHG 1115
+IE N + G GI I S ++R+N H+ ++G
Sbjct: 136 PGNVIEGNTVRG-GRDGIYIEFSHHNLIRNNTSHNLRYG 173
Score = 32.6 bits (75), Expect = 1.4
Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 43/237 (18%)
Query: 623 GVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIH------HGQHG-GVYV-HE 674
G+ + R +IE+N + N L GI ++ + D ++ +N+I G G+++ +
Sbjct: 77 GIKVEKADRAVIENNRLEDN-LFGIYLQEAHDSLIENNRITGKPDLRSNDRGNGIHLWNS 135
Query: 675 KGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNG- 733
G +IE N R G+ I + +IR N N
Sbjct: 136 PGN-VIEGNT--------------------VRGGRDGIYIEFSHHNLIRNNT---SHNLR 171
Query: 734 -GVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGR-DGGICIF-NGGKGV 790
G+ L+E N N+ G + T++ N + D G I
Sbjct: 172 YGLHFMYSNDNLVEDNVFRGNS-VGYALMYSKRLTVRGNVFLNNWGDAGYGILLKEINDS 230
Query: 791 LEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNNRF 847
E + G+ I + R N F+ G+ TA E N+ N F
Sbjct: 231 EIEGNTVLGNTKGLFIDNSPRNVFRDND-FEYNGIGIHF----TAGSERNRFEGNAF 282
>gnl|CDD|225954 COG3420, NosD, Nitrous oxidase accessory protein [Inorganic ion
transport and metabolism].
Length = 408
Score = 41.7 bits (98), Expect = 0.002
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 36/194 (18%)
Query: 573 GQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEI-----YNGHQ--GGVY 625
GI+V G + + N G+++ +++ I N I + G+Y
Sbjct: 95 AMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIY 154
Query: 626 IFGEGRGLIEHNNI-YGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENE 684
++ L+ N+I YG GI TS + + N+ ++G Y++ I +N
Sbjct: 155 VYNAPGALVVGNDISYGR--DGIYSDTSQHNVFKGNRFRDLRYGVHYMYTNDS-RISDNS 211
Query: 685 GKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGL 744
+R G + + N+ G ++ G+L L
Sbjct: 212 --------------------SRDNRVGYALMYSDRLKVSDNRSSGNRDHGIL-----LNY 246
Query: 745 LEQNEIFDNAMAGV 758
+ I N +AG
Sbjct: 247 ANYSRIVGNRVAGN 260
Score = 37.5 bits (87), Expect = 0.037
Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 46/203 (22%)
Query: 259 DVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALA---- 314
D GIF +R N++ G+ G+Y+ G IE N I G A
Sbjct: 97 DAGIFVGRTAT-------GAVVRHNDLI-GNSFGIYLHGSADVRIEGNTIQGLADLRVAE 148
Query: 315 ---GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPV 371
GI + + +V N I +G+ G +Y++ T V
Sbjct: 149 RGNGIYVYNAPGALVVGNDISYGRDG----------------IYSD--------TSQHNV 184
Query: 372 LRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGV 431
+ NR + Y Y N ++ DN ++ G + + N+ G ++ G+
Sbjct: 185 FKGNRFRDLRYGVHYMYTND-SRISDNSSRDN-RVGYALMYSDRLKVSDNRSSGNRDHGI 242
Query: 432 LVYNGGLGLLEQNEIFDNAMAGV 454
L L + I N +AG
Sbjct: 243 L-----LNYANYSRIVGNRVAGN 260
Score = 34.4 bits (79), Expect = 0.39
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 1020 GQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEI-----YNGHQ--GGVY 1072
GI+V G + + N G+++ +++ I N I + G+Y
Sbjct: 95 AMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIY 154
Query: 1073 IFGEGRGLIEHNNI-YGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEEN 1130
++ L+ N+I YG GI TS + + N+ ++G Y++ I +N
Sbjct: 155 VYNAPGALVVGNDISYGR--DGIYSDTSQHNVFKGNRFRDLRYGVHYMYTNDS-RISDN 210
Score = 34.0 bits (78), Expect = 0.50
Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 26/232 (11%)
Query: 930 NVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFF 989
+ G++V A G + GI++ A+ + N I D+ +
Sbjct: 97 DAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRV---------- 146
Query: 990 EANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVW 1049
R G V VV +I +G+ GIY + F NR + +
Sbjct: 147 ------AERGNGIYVYNAPGALVVGNDISYGRD-GIYSDTSQHNVFKGNRFRDLRYGVHY 199
Query: 1050 ITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKI 1109
+ +N + I N ++ G + R + N GN GI + ++ + N++
Sbjct: 200 MYTNDS-RISDN-SSRDNRVGYALMYSDRLKVSDNRSSGNRDHGILLNYANYSRIVGNRV 257
Query: 1110 HHGQHGGVYVHEKGVGLIEENEGFFEANDIHNNRIAGFEVKAGANPTVVSGD 1161
G K V + N N I G + AG+ + G+
Sbjct: 258 AGNVSG------KCVFIYNANYNKIRGNSFEGCAI-GIHLTAGSEGNEIIGN 302
>gnl|CDD|163517 TIGR03805, beta_helix_1, parallel beta-helix repeat-containing
protein. Members of this protein family contain a
tandem pair of beta-helix repeats (see TIGR03804). Each
repeat is expected to consist of three beta strands that
form a single turn as they form a right-handed helix of
stacked beta-structure. Member proteinsa occur regularly
in two-gene pairs along with another uncharacterized
protein family; both protein families exhibit either
lipoprotein or regular signal peptides, suggesting
transit through the plasma membrane, and the two may be
fused. The function of the pair is unknown [Unknown
function, General].
Length = 314
Score = 38.5 bits (90), Expect = 0.016
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 238 GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGH--IFPISNSNPTIRRNEIYNGHQGGVYI 295
G+ VK I+RR + G NG I+P+ ++N + + + G+Y+
Sbjct: 79 GVKVKGSDGIIIRRLRVEWT---GGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135
Query: 296 FGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYV-------HEKGVGL 348
G+ + ++ NN+ +AGI+I S + V +N I GG+ V G +
Sbjct: 136 -GQSQNIVVRNNVAEENVAGIEIENSQNADV-YNNIATNNTGGILVFDLPGLPQPGGSNV 193
Query: 349 -IEENEVYAN 357
+ +N ++ N
Sbjct: 194 RVFDNIIFDN 203
Score = 32.3 bits (74), Expect = 1.3
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 595 SNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSD 654
SN G++ ++N + + + G+Y+ G+ + ++ NN+ +AGI+I S +
Sbjct: 104 SNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGIEIENSQN 162
Query: 655 PIVRHNKIHHGQHGGVYV 672
V +N I GG+ V
Sbjct: 163 ADV-YNNIATNNTGGILV 179
Score = 30.0 bits (68), Expect = 6.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 788 KGVLEENDIFRNAQ-AGVLISTQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNNR 846
VL E+ R A AG+ + + ++R N + AG+EI N+ A + +N NN
Sbjct: 116 TNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEEN-VAGIEIENSQNADVYNNIATNNT 174
Query: 847 FGGL 850
G L
Sbjct: 175 GGIL 178
>gnl|CDD|234360 TIGR03804, para_beta_helix, parallel beta-helix repeat (two
copies). This model represents a tandem pair of an
approximately 22-amino acid (each) repeat homologous to
the beta-strand repeats that stack in a right-handed
parallel beta-helix in the periplasmic C-5 mannuronan
epimerase, AlgA, of Pseudomonas aeruginosa. A homology
domain consisting of a longer tandem array of these
repeats is described in the SMART database as CASH
(SM00722), and is found in many carbohydrate-binding
proteins and sugar hydrolases. A single repeat is
represented by SM00710. This TIGRFAMs model represents a
flavor of the parallel beta-helix-forming repeat based
on prokaryotic sequences only in its seed alignment,
although it also finds many eukaryotic sequences.
Length = 44
Score = 31.4 bits (72), Expect = 0.18
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 600 GVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGN 642
G+++ S+SN T+ N N G+Y+ + +N N
Sbjct: 1 GIYLESSSNNTLENNTASNNS-YGIYLTDSSNNTLSNNTASSN 42
Score = 31.4 bits (72), Expect = 0.18
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1047 GVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGN 1089
G+++ S+SN T+ N N G+Y+ + +N N
Sbjct: 1 GIYLESSSNNTLENNTASNNS-YGIYLTDSSNNTLSNNTASSN 42
Score = 29.4 bits (67), Expect = 0.86
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 577 GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYN 618
GIY+ + +N SNN G+++T +SN T+ N +
Sbjct: 1 GIYLESSSNNTLENNTA-SNNSYGIYLTDSSNNTLSNNTASS 41
Score = 29.4 bits (67), Expect = 0.86
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1024 GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYN 1065
GIY+ + +N SNN G+++T +SN T+ N +
Sbjct: 1 GIYLESSSNNTLENNTA-SNNSYGIYLTDSSNNTLSNNTASS 41
Score = 27.1 bits (61), Expect = 6.0
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 453 GVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRN 495
G+++++ SN TL+ N + GI + + L N N
Sbjct: 1 GIYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASSN 42
Score = 27.1 bits (61), Expect = 6.0
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 757 GVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRN 799
G+++++ SN TL+ N + GI + + L N N
Sbjct: 1 GIYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASSN 42
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein.
This family of proteins possesses a beta helical
structure like Pectate lyase. This family is most
closely related to glycosyl hydrolase family 28.
Length = 222
Score = 33.9 bits (78), Expect = 0.37
Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 18/167 (10%)
Query: 274 SNSNPTIRRNE---IYNGHQGGVYIFGEGRGL-IEHNNIYGNAL------AGIQIRTSSD 323
+ P ++ ++ + G I I + I G + +GI + +
Sbjct: 61 GKNPPVLKLSDAAPSFVIVGGNAVIDAGDPYRQIRNFVIDGTGVSPDRTGSGIHWQVAQA 120
Query: 324 PIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQV 383
+ + +I + G+ + I N G++I GS V+ + + +G
Sbjct: 121 TSIENVEIINPGLHGIDFNMGTANTIPGN-----NHQGIFIDNGSGGVMVEDLVFNGGDD 175
Query: 384 GVYFYDNGHGKLEDNDIFN-HLYSGVQIRTGSNPIIRGNKIWGGQNG 429
G F N FN +G+ I G I G
Sbjct: 176 GATFG--SQQFTIRNLTFNNACSTGIGIDWGWGWTYNNLTINNCGVG 220
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Ornithine Decarboxylase. This
subfamily is composed mainly of eukaryotic ornithine
decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes
from prokaryotes represented by Vibrio vulnificus
LysineOrnithine decarboxylase. These are fold type III
PLP-dependent enzymes that differ from most bacterial
ODCs which are fold type I PLP-dependent enzymes. ODC
participates in the formation of putrescine by
catalyzing the decarboxylation of ornithine, the first
step in polyamine biosynthesis. Members of this
subfamily contain an N-terminal PLP-binding TIM-barrel
domain and a C-terminal beta-sandwich domain, similar to
bacterial alanine racemases. They exist as homodimers
with active sites that lie at the interface between the
TIM barrel domain of one subunit and the beta-sandwich
domain of the other subunit. Homodimer formation and the
presence of the PLP cofactor are required for catalytic
activity. Also members of this subfamily are proteins
with homology to ODC but do not possess any catalytic
activity, the Antizyme inhibitor (AZI) and ODC-paralogue
(ODC-p). AZI binds to the regulatory protein Antizyme
with a higher affinity than ODC and prevents ODC
degradation. ODC-p is a novel ODC-like protein, present
only in mammals, that is specifically exressed in the
brain and testes. ODC-p may function as a
tissue-specific antizyme inhibitory protein.
Length = 362
Score = 34.0 bits (79), Expect = 0.40
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
+ANP + I + ++G+ FTFD+
Sbjct: 74 FANPCKSISDIRYAAELGVRLFTFDS 99
Score = 34.0 bits (79), Expect = 0.40
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
+ANP + I + ++G+ FTFD+
Sbjct: 74 FANPCKSISDIRYAAELGVRLFTFDS 99
>gnl|CDD|219483 pfam07602, DUF1565, Protein of unknown function (DUF1565). These
proteins share a region of homology in their N termini,
and are found in several phylogenetically diverse
bacteria and in the archaeon Methanosarcina acetivorans.
Some of these proteins also contain characterized domains
such as pfam00395 and pfam03422.
Length = 252
Score = 32.1 bits (73), Expect = 1.6
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 1047 GVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALA----GIQIRTSSDP 1102
GVWI S ++P IR N G+++ + I N I GN + GI I + P
Sbjct: 122 GVWIES-ASPKIRNNTFTGNGGDGIFVNITNKPGIGGNIISGNFILFNKNGIGISVARAP 180
Query: 1103 IVR--HNKIHHGQHGGVYVHEKGVGLIEENEGFFEANDIHNN 1142
+ N I GV + G+ L + G N N
Sbjct: 181 VPNKIENNIIVQNLIGVVANALGLDLGGGSTGSAGNNIFSCN 222
Score = 31.3 bits (71), Expect = 2.2
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 600 GVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALA----GIQIRTSSDP 655
GVWI S ++P IR N G+++ + I N I GN + GI I + P
Sbjct: 122 GVWIES-ASPKIRNNTFTGNGGDGIFVNITNKPGIGGNIISGNFILFNKNGIGISVARAP 180
Query: 656 IVRHNKI 662
+ NKI
Sbjct: 181 VP--NKI 185
>gnl|CDD|219858 pfam08480, Disaggr_assoc, Disaggregatase related. This domain is
found in disaggregatases and several hypothetical
proteins of the archaeal genus Methanosarcina.
Disaggregatases cause aggregates to separate into single
cells and contain parallel beta-helix repeats. Also see
pfam06848.
Length = 198
Score = 30.4 bits (69), Expect = 3.9
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 33/118 (27%)
Query: 228 DNEISRNALAGIWVKNYANPIMRRN----HIHHGRDVGIFTFDNGHIFPISNSNPTIRRN 283
+N I GIW+ Y + + HIHH +IF + +NP+I +
Sbjct: 8 NNVIYNTYGPGIWLFGYDGSYSKDSAKNVHIHH------------NIFYDTGTNPSI--D 53
Query: 284 EIYNGHQGGVYIFGEGRGLIEHN---NIYGNALAGIQIRTSSDP-------IVRHNKI 331
+ GG+ G LIE+N +YG A+ + P IVR+N I
Sbjct: 54 WV-----GGIVTSGFYNTLIENNVFDGVYGAAIVQMYPYYDFSPSGSGYTTIVRNNII 106
Score = 29.3 bits (66), Expect = 10.0
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 26/99 (26%)
Query: 590 DNRIHSNNFAGVWI---------TSNSNPTIRRNEIYNGHQ-------GGVYIFGEGRGL 633
+N I++ G+W+ S N I N Y+ GG+ G L
Sbjct: 8 NNVIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPSIDWVGGIVTSGFYNTL 67
Query: 634 IEHN---NIYGNALAGIQIRTSSDP-------IVRHNKI 662
IE+N +YG A+ + P IVR+N I
Sbjct: 68 IENNVFDGVYGAAIVQMYPYYDFSPSGSGYTTIVRNNII 106
Score = 29.3 bits (66), Expect = 10.0
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 26/99 (26%)
Query: 1037 DNRIHSNNFAGVWI---------TSNSNPTIRRNEIYNGHQ-------GGVYIFGEGRGL 1080
+N I++ G+W+ S N I N Y+ GG+ G L
Sbjct: 8 NNVIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPSIDWVGGIVTSGFYNTL 67
Query: 1081 IEHN---NIYGNALAGIQIRTSSDP-------IVRHNKI 1109
IE+N +YG A+ + P IVR+N I
Sbjct: 68 IENNVFDGVYGAAIVQMYPYYDFSPSGSGYTTIVRNNII 106
>gnl|CDD|184984 PRK15023, PRK15023, L-serine deaminase; Provisional.
Length = 454
Score = 30.0 bits (67), Expect = 7.5
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 973 HGRDVGIFTFDNGHGFFEAN-DIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENG 1031
GR F DNG F N +H N G ++ A VV+ + ++ GG V E
Sbjct: 100 QGRHEVDFPRDNGMRFHNGNLPLHEN---GMQIHAYNGDEVVYSKTYYSIGGGFIVDEEH 156
Query: 1032 LGQFIDNRI 1040
GQ N +
Sbjct: 157 FGQDAANEV 165
>gnl|CDD|219986 pfam08715, Viral_protease, Papain like viral protease. This family
of viral proteases are similar to the papain protease
and are required for proteolytic processing of the
replicase polyprotein. The structure of this protein has
shown it adopts a fold similar that of de-ubiquitinating
enzymes.
Length = 320
Score = 29.5 bits (66), Expect = 9.9
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 176 TIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDI--SDCENVGLYVTDY 221
+C + +V G + VCAS L S+C G T
Sbjct: 190 VCCNCGQKKYTVRGVEAAI--VCASVNLDGFKTGYSNCCVCGRKATSR 235
Score = 29.5 bits (66), Expect = 9.9
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 893 TIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDI--SDCENVGLYVTDY 938
+C + +V G + VCAS L S+C G T
Sbjct: 190 VCCNCGQKKYTVRGVEAAI--VCASVNLDGFKTGYSNCCVCGRKATSR 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.429
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 62,030,347
Number of extensions: 6348818
Number of successful extensions: 4692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4439
Number of HSP's successfully gapped: 106
Length of query: 1175
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1067
Effective length of database: 6,147,370
Effective search space: 6559243790
Effective search space used: 6559243790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.4 bits)