RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy675
(1175 letters)
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase;
2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Length = 377
Score = 72.6 bits (177), Expect = 2e-13
Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 31/366 (8%)
Query: 74 IQAALDHGDELGQSAPLVFVHSGVYR--------GEFLVLDSDVIIIGAAPGNVAESVIL 125
IQAA+D G V++ +G YR L+L V + GA G +I
Sbjct: 22 IQAAIDAAYAAGGG--TVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLID 79
Query: 126 ERDTESTVM----FVEGAKNAYLGHVTL---KFSPEAPSTVQHHKHYCLEVGEHATPTID 178
D + T M + E N + +TL + + + + G TI+
Sbjct: 80 GSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIE 139
Query: 179 HCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAG 238
+R S G + T+R D G ++E+N N G
Sbjct: 140 RVEVREMSGYG--FDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHG 197
Query: 239 IWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGE 298
V + + N++ +G G SN I Y+ + GV +
Sbjct: 198 FNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMT 257
Query: 299 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT 358
+++ +I+GN +G+++ + D + N+IH +
Sbjct: 258 SDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPE------VLLQSFDDTA 311
Query: 359 LAGVWITTGSAPVLRRNRIHS--GKQVGVYFYDNG--HGKLEDNDIFNHLYSGVQIRTGS 414
A T + N I G+ ++G + L DNDI + +Q+ G
Sbjct: 312 GASGTYYTTLNTRIEGNTISGSANSTYGIQERNDGTDYSSLIDNDI-AGVQQPIQL-YGP 369
Query: 415 NPIIRG 420
+ + G
Sbjct: 370 HSTVSG 375
Score = 71.0 bits (173), Expect = 6e-13
Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 9/242 (3%)
Query: 922 HCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFT 981
+ S+ L + + N + + R + G
Sbjct: 94 GEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDP 153
Query: 982 FDNGHGF-FEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFI-DNR 1039
+ + H+N + GF + + + G V + + +N
Sbjct: 154 HEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNV 213
Query: 1040 IHSNNFAGVWITSNS-------NPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALA 1092
+ N +G+ + N I Y+ + GV + +++ +I+GN +
Sbjct: 214 AYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSS 273
Query: 1093 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGFFEANDIHNNRIAGFEVKAG 1152
G+++ + D + N+IH + N RI G +
Sbjct: 274 GVRVYGAQDVQILDNQIHDNAQAAAVPEVLLQSFDDTAGASGTYYTTLNTRIEGNTISGS 333
Query: 1153 AN 1154
AN
Sbjct: 334 AN 335
Score = 69.1 bits (168), Expect = 2e-12
Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 34/234 (14%)
Query: 533 LLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFI-DN 591
N + H+N + GF + + + G V + + +N
Sbjct: 153 PHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNN 212
Query: 592 RIHSNNFAGVWITSNS-------NPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNAL 644
+ N +G+ + N I Y+ + GV + +++ +I+GN
Sbjct: 213 VAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGS 272
Query: 645 AGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPR 704
+G+++ + D + N+IH + L
Sbjct: 273 SGVRVYGAQDVQILDNQIHDNAQAAAVPE-------------------------VLLQSF 307
Query: 705 ARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGV 758
+ T N I GN I G N + G + + + DN +AGV
Sbjct: 308 DDTAGASGTYYTTLNTRIEGNTISGSANSTYGIQERNDG-TDYSSLIDNDIAGV 360
Score = 63.3 bits (153), Expect = 2e-10
Identities = 45/360 (12%), Positives = 94/360 (26%), Gaps = 34/360 (9%)
Query: 291 GGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIE 350
GG G + G+ ++ + G V
Sbjct: 34 GGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLIDGSDQKITGMVRSAY 93
Query: 351 ENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQI 410
E + + + + + + +E ++ G
Sbjct: 94 GEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDP 153
Query: 411 RTGS-NPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTES-NPTLKRNK 468
+ N IR + G + + E N + N G + T + + + N
Sbjct: 154 HEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNV 213
Query: 469 IFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNT 528
+ G+ + G + + ++I + +D GV + T
Sbjct: 214 AYGNGSSGLVVQRGLEDLALPSNIL----------------IDGGAYYDNAREGVLLKMT 257
Query: 529 PLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQF 588
+ + DIH N +G V + ++ +IH
Sbjct: 258 ---------SDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPE------V 302
Query: 589 IDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQ 648
+ A + N I N I I G +++++ N +AG+Q
Sbjct: 303 LLQSFDDTAGASGTYYTTLNTRIEGNTISGSANSTYGIQERNDG-TDYSSLIDNDIAGVQ 361
Score = 61.4 bits (148), Expect = 7e-10
Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 9/206 (4%)
Query: 283 NEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVH 342
E N + + G + + N D + ++ G H
Sbjct: 95 EETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPH 154
Query: 343 EKGVGL-IEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGK-LEDNDI 400
E+ + L I ++ + N L G V N ++ + G + H + +N
Sbjct: 155 EQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVA 214
Query: 401 FNHLYSGVQIRTGS-------NPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAG 453
+ + SG+ ++ G N +I G + GVL+ L+ +I N +G
Sbjct: 215 YGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSG 274
Query: 454 VWIKTESNPTLKRNKIFDGRDGGICI 479
V + + + N+I D
Sbjct: 275 VRVYGAQDVQILDNQIHDNAQAAAVP 300
Score = 60.6 bits (146), Expect = 1e-09
Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 30/227 (13%)
Query: 919 TLRHCDISDCENVGLYVTDYAQGLY-EDNEISRNALAGIWVKNYANPIMRRNHIHHGRDV 977
T+ ++ + G + L D+ N L G + + N +
Sbjct: 137 TIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRH 196
Query: 978 GIFTFDNGHGF-FEANDIHNNRIAGFEVKAGA-------NPTVVHCEIHHGQTGGIYVHE 1029
G + H F N + N +G V+ G N + + G+ +
Sbjct: 197 GFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKM 256
Query: 1030 NGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYI---------------- 1073
+ IH N +GV + + I N+I++ Q
Sbjct: 257 TSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPEVLLQSFDDTAGASGT 316
Query: 1074 -FGEGRGLIEHNNIYGNALAGIQIRTSSD----PIVRHNKIHHGQHG 1115
+ IE N I G+A + I+ +D + N I Q
Sbjct: 317 YYTTLNTRIEGNTISGSANSTYGIQERNDGTDYSSLIDNDIAGVQQP 363
Score = 52.9 bits (126), Expect = 4e-07
Identities = 44/287 (15%), Positives = 82/287 (28%), Gaps = 55/287 (19%)
Query: 567 HCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYI 626
E + + + N N + ++ + TI R E+ G
Sbjct: 94 GEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDP 153
Query: 627 FGEGRGLIEHNN-IYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEG 685
+ L ++ + N L G D + +N + G V
Sbjct: 154 HEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVV------------ 201
Query: 686 KENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLG-- 743
+ + ++ N +G + G++V G
Sbjct: 202 -----------------------------TSTHDFVMTNNVAYGNGSSGLVVQRGLEDLA 232
Query: 744 -----LLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFR 798
L++ +DNA GV +K S+ TL+ I G+ ++ + +N I
Sbjct: 233 LPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHD 292
Query: 799 NAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNN 845
NAQA + + D A +E N I +
Sbjct: 293 NAQAAAVPE------VLLQSFDDTAGASGTYYTTLNTRIEGNTISGS 333
Score = 51.8 bits (123), Expect = 8e-07
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 2/191 (1%)
Query: 969 NHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVH 1028
+ + N D N A + T+ E+ G H
Sbjct: 95 EETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPH 154
Query: 1029 ENGLGQFI-DNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRG-LIEHNNI 1086
E + I D+ H N G + N Y + G + ++ +N
Sbjct: 155 EQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVA 214
Query: 1087 YGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGFFEANDIHNNRIAG 1146
YGN +G+ ++ + + + I +GV L ++ + DIH N +G
Sbjct: 215 YGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSG 274
Query: 1147 FEVKAGANPTV 1157
V + +
Sbjct: 275 VRVYGAQDVQI 285
Score = 48.7 bits (115), Expect = 8e-06
Identities = 30/245 (12%), Positives = 63/245 (25%), Gaps = 26/245 (10%)
Query: 614 NEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVH 673
E N + + G + + N D + ++ G H
Sbjct: 95 EETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPH 154
Query: 674 EKGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNG 733
E+ + L + + G + + N +
Sbjct: 155 EQTINLTIRDSVAHDN------------------GLDGFVADYLVDSVFENNVAYANDRH 196
Query: 734 GVLVYNGG-LGLLEQNEIFDNAMAGVWIKTES-------NPTLKRNKIFDGRDGGICIFN 785
G V ++ N + N +G+ ++ N + +D G+ +
Sbjct: 197 GFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKM 256
Query: 786 GGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNN 845
L+ DI N +GV + + N+I D A + +
Sbjct: 257 TSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPEVLLQSFDDTAGASGT 316
Query: 846 RFGGL 850
+ L
Sbjct: 317 YYTTL 321
Score = 46.4 bits (109), Expect = 4e-05
Identities = 33/250 (13%), Positives = 69/250 (27%), Gaps = 13/250 (5%)
Query: 622 GGVYIFGEGR----GLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGV 677
GG G E + G+ + + I +
Sbjct: 34 GGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLIDGSDQKITGMVRSAY 93
Query: 678 GLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLV 737
G N G + L R + Y + I ++ G
Sbjct: 94 GEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDP 153
Query: 738 YNGGLGLLEQNEIF-DNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKG-VLEEND 795
+ + L ++ + DN + G + + N + G + V+ N
Sbjct: 154 HEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNV 213
Query: 796 IFRNAQAGVLIS-------TQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNNRFG 848
+ N +G+++ S+ ++ +D GV + + TL++ I N
Sbjct: 214 AYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSS 273
Query: 849 GLCLASGAKN 858
G+ +
Sbjct: 274 GVRVYGAQDV 283
Score = 29.8 bits (66), Expect = 5.3
Identities = 34/316 (10%), Positives = 78/316 (24%), Gaps = 45/316 (14%)
Query: 738 YNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIF 797
G + E + M + + + T + + +E ++
Sbjct: 85 ITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVR 144
Query: 798 RNAQAGVLISTQSHPMLRRNRIFDGFAA-GVEITNNATATLEDNQIFNNRFGGLCLASGA 856
+ G Q+ + R+ + G + E+N + N G + +
Sbjct: 145 EMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTST 204
Query: 857 KNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAV----CVS 912
+ + + + G V
Sbjct: 205 HDF---------------------------------VMTNNVAYGNGSSGLVVQRGLEDL 231
Query: 913 GVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIH 972
+ ++ + D G+ + + ++ +I N +G+ V + + N IH
Sbjct: 232 ALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIH 291
Query: 973 HGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGL 1032
F + A N + I + E
Sbjct: 292 DNAQAAAVPEVLLQSF------DDTAGASGTYYTTLNTRIEGNTISGSANSTYGIQERND 345
Query: 1033 GQFIDNRIHSNNFAGV 1048
G + + N+ AGV
Sbjct: 346 GT-DYSSLIDNDIAGV 360
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase;
1.80A {Bacillus SP} PDB: 2inv_A*
Length = 410
Score = 56.5 bits (135), Expect = 3e-08
Identities = 58/381 (15%), Positives = 103/381 (27%), Gaps = 65/381 (17%)
Query: 460 SNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGF 519
I D + +A L+ P L D
Sbjct: 85 FGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRDFC 144
Query: 520 AAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIY 579
GV T N N + G A+D + I G + +
Sbjct: 145 LDGVGFTPG--KNSYHNGKTGIEVASDNDSFHITGMGFVYLEH--------------ALI 188
Query: 580 VHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRG--LIEHN 637
V + +++ + + V +T TI GV + E L+ N
Sbjct: 189 VRGADALR-VNDNMIAECGNCVELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGN 247
Query: 638 NIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFL 697
N++ + I+ + V N++ G + + N KEN
Sbjct: 248 NLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRL---------LNGCKEN--------- 289
Query: 698 QIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNG--GVLVYNGGLGLLEQNEIFDNAM 755
+ IR + G + GV+ G L+ N N
Sbjct: 290 ----------LITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVP 339
Query: 756 AGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLR 815
+ PT I I G V+ N + + + ++ S
Sbjct: 340 PANIAPAGAQPT------------QILIAGGDANVVALNHVVSDVASQHVVLDAS---TT 384
Query: 816 RNRIFD-GFAAGVEITNNATA 835
+++ D G A+ + ++ TA
Sbjct: 385 HSKVLDSGTASQITSYSSDTA 405
Score = 54.6 bits (130), Expect = 1e-07
Identities = 33/247 (13%), Positives = 57/247 (23%), Gaps = 19/247 (7%)
Query: 924 DISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFD 983
S V L G+ N H GI
Sbjct: 116 LTSPSAPQAFLVKRAGDPRLSGIVFRDFCLDGVGFTPGKNSY-------HNGKTGIEVAS 168
Query: 984 NGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSN 1043
+ F V+ V I + + G +
Sbjct: 169 DNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAECGNC-VELTGAGQATIVSGNHMGA 227
Query: 1044 NFAG--VWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGI-QIRTSS 1100
G + ++ + N ++ + + G R + N + G + +
Sbjct: 228 GPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCK 287
Query: 1101 DPIVRHNKIHHGQHGGVYVHEKGVGL--------IEENEGFFEANDIHNNRIAGFEVKAG 1152
+ ++ N I G +G GL I + N N AG
Sbjct: 288 ENLITANHIRRTNEGYPPFIGRGNGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAG 347
Query: 1153 ANPTVVS 1159
A PT +
Sbjct: 348 AQPTQIL 354
Score = 50.7 bits (120), Expect = 2e-06
Identities = 57/385 (14%), Positives = 110/385 (28%), Gaps = 58/385 (15%)
Query: 91 VFVHSGVYR--GEFLVLDSDVIIIGAAPGNVAESVILERDTESTVMFVEGAKNAYLGHVT 148
+ + G Y + +V S + I G G + S++ + GA H+
Sbjct: 60 IIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGA-----SHIR 114
Query: 149 LKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDI 208
+ SP AP V P + + +V C+ GV +P +
Sbjct: 115 VLTSPSAPQA--------FLVKRAGDPRL-------SGIVFRDFCLDGVGFTP---GKNS 156
Query: 209 SDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNG 268
G+ V + + V+ + N I +
Sbjct: 157 YHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAECGN--------- 207
Query: 269 HIFPISNSNPTIRRNEIYNGHQGGVYIFGEGRG--LIEHNNIYGNALAGIQIRTSSDPIV 326
+ TI GV + E L+ NN++ + I+ + V
Sbjct: 208 CVELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSV 267
Query: 327 RHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVY 386
N++ G + + +EN + AN + T P GV
Sbjct: 268 TSNRLQGFYPGMLRLLNGC----KENLITANH---IRRTNEGYPPFIGRGNGLDDLYGVV 320
Query: 387 FYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEI 446
+ + DN ++ G+ P +L+ G ++ N +
Sbjct: 321 HIAGDNNLISDNLFAYNVPPANIAPAGAQPTQ------------ILIAGGDANVVALNHV 368
Query: 447 FDNAMAGVWIKTESNPTLKRNKIFD 471
+ + + S +K+ D
Sbjct: 369 VSDVASQHVVLDAST---THSKVLD 390
Score = 43.4 bits (101), Expect = 3e-04
Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 721 IIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGG 780
G + G+ V + F + ++ + N I + +
Sbjct: 150 FTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAECGNC- 208
Query: 781 ICIFNGGKGVLEENDIFRNAQAGVLISTQSH--PMLRRNRIFDGFAAGVEITNNATATLE 838
+ + G+ + + GV + ++H ++ N +F + +E T ++
Sbjct: 209 VELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVT 268
Query: 839 DNQIFNNRFGGLCLASGAKN 858
N++ G L L +G K
Sbjct: 269 SNRLQGFYPGMLRLLNGCKE 288
Score = 36.5 bits (83), Expect = 0.045
Identities = 34/300 (11%), Positives = 64/300 (21%), Gaps = 27/300 (9%)
Query: 717 GSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDG 776
G I N + +A +K +P L
Sbjct: 84 GFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVF--- 140
Query: 777 RDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATAT 836
C+ G G + + N + G+ +++ + F + +
Sbjct: 141 --RDFCL--DGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALR 196
Query: 837 LEDNQIFNNRFGGLCLASGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDH 896
+ DN I +G G+ L H +
Sbjct: 197 VNDNMIAECGNCVELTGAGQATIVSGNHM----------GAGPDGVTLLAENHEGLLVTG 246
Query: 897 CIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGI 956
+ + + +G + + + + L N I R
Sbjct: 247 NNLFPRG--RSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCKENLITANHIRRTNEGYP 304
Query: 957 WVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCE 1016
N G+ + N N AGA PT +
Sbjct: 305 PFIGRGN--------GLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIA 356
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 49.0 bits (116), Expect = 6e-06
Identities = 35/212 (16%), Positives = 59/212 (27%), Gaps = 32/212 (15%)
Query: 943 YEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGI-FTFDNGHGFFEANDIHNNRIA- 1000
++ E++R G +V N HH R+ G+ + +D + N
Sbjct: 119 FKGVEVTRAGYQGAYVIGSHNTF-ENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPK 177
Query: 1001 -------GFEVK--AGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWIT 1051
GF K G V C G + ++ I+N N W
Sbjct: 178 KNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWND 237
Query: 1052 SNS----------------NPTIRRNEIY-NGHQGGVYIFGEGRGLIEHNNIYGNALAGI 1094
S N I R+ + N +G G + +N Y N +
Sbjct: 238 SAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYG 297
Query: 1095 ---QIRTSSDPIVRHNKIHHGQHGGVYVHEKG 1123
+++ R+N K
Sbjct: 298 FGSNVQSGQKHYFRNNVSLSASVTVSNADAKS 329
Score = 47.9 bits (113), Expect = 2e-05
Identities = 35/232 (15%), Positives = 56/232 (24%), Gaps = 22/232 (9%)
Query: 467 NKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEIT 526
+ G + A SH G+EI
Sbjct: 98 FPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEIN 157
Query: 527 NTPLSNLLINKENGFFEANDIHNNRIAGFEVK--AGANPTVVHCEIHHGQTGGIYVHENG 584
N N +IN + + + GF K G V C G + ++
Sbjct: 158 NGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSP 217
Query: 585 LGQFIDNRIHSNNFAGVWITSNS----------------NPTIRRNEIY-NGHQGGVYIF 627
I+N N W S N I R+ + N +G
Sbjct: 218 QKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNN 277
Query: 628 GEGRGLIEHNNIYGNALAGI---QIRTSSDPIVRHNKIHHGQHGGVYVHEKG 676
G + +N Y N + +++ R+N K
Sbjct: 278 NAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKS 329
Score = 44.0 bits (103), Expect = 2e-04
Identities = 31/212 (14%), Positives = 57/212 (26%), Gaps = 15/212 (7%)
Query: 226 YEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEI 285
++ E++R G +V N HH R+ G+ + G + NS+ +
Sbjct: 119 FKGVEVTRAGYQGAYVIGSHNTF-ENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPK 177
Query: 286 YNGHQG---GVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVH 342
NG G + N+ G + S +V N +
Sbjct: 178 KNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWND 237
Query: 343 EKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN-GHGKLEDNDIF 401
G N + R+ G +N G + +N +
Sbjct: 238 SAFAGN-------GNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSY 290
Query: 402 N---HLYSGVQIRTGSNPIIRGNKIWGGQNGG 430
+ G +++G R N
Sbjct: 291 KNGINYGFGSNVQSGQKHYFRNNVSLSASVTV 322
Score = 41.3 bits (96), Expect = 0.001
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 18/173 (10%)
Query: 522 GVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGA-NPTVVHCEIHH-------- 572
GVE+T + + FE H+NR G E+ G TV++ + +
Sbjct: 121 GVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNG 180
Query: 573 GQTGGIYVHE-NGLGQ-FIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEG 630
G + G G F+ R N+ G + + + N + +
Sbjct: 181 SMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF 240
Query: 631 RGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEEN 683
G + GN G + + + G + G+ N
Sbjct: 241 AGNGNGFKLGGNQAVG-------NHRITRSVAFGNVSKGFDQNNNAGGVTVIN 286
Score = 41.3 bits (96), Expect = 0.001
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 5/136 (3%)
Query: 1029 ENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYG 1088
+ F + + + + E+ G Y+ G E+ +
Sbjct: 90 GRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSH-NTFENTAFHH 148
Query: 1089 NALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVG----LIEENEGFFEANDIHNNRI 1144
N G++I N + + G + F N
Sbjct: 149 NRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSD 208
Query: 1145 AGFEVKAGANPTVVSG 1160
GF++ V+
Sbjct: 209 DGFDLFDSPQKVVIEN 224
Score = 41.3 bits (96), Expect = 0.002
Identities = 46/346 (13%), Positives = 85/346 (24%), Gaps = 55/346 (15%)
Query: 62 SDPGRKLAHFDTIQAALDH---GDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAPGN 118
S+ G + AA+ G+ + + G Y + + I + +
Sbjct: 26 SNNGSSFNAPMSFSAAMAAVNPGEL-------ILLKPGTYTIPYTQGKGNTITFNKSGKD 78
Query: 119 VAESVILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTID 178
A + + V + + +A Y
Sbjct: 79 GAPIYVAAANCGRAVFDFSFPDSQW---------VQASYGFYVTGDYW---------YFK 120
Query: 179 HCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQG-LYEDNEISRNALA 237
+ GA V S + N GL + + +++ RN
Sbjct: 121 GVEVTRAGYQGAYVIGSHNT----FENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDP 176
Query: 238 ----------GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNS-------NPTI 280
G K D G FD+ I NS N
Sbjct: 177 KKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWN 236
Query: 281 RRNEIYNGHQGGVYIFGE-GRGLIEHNNIYGNALAGIQIRTSSDPI-VRHNKIHHGQHGG 338
NG+ + G I + +GN G ++ + V +N +
Sbjct: 237 DSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINY 296
Query: 339 VYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVG 384
+ G + + N ++ T S + N +G
Sbjct: 297 GFGSNVQSG---QKHYFRNNVSLSASVTVSNADAKSNSWDTGPAAS 339
Score = 40.2 bits (93), Expect = 0.004
Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 25/202 (12%)
Query: 954 AGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGA-NPTV 1012
+ + + + G + H FE H+NR G E+ G TV
Sbjct: 107 SYGFYVTGDYWYFKGVEVTRAGYQGAY-VIGSHNTFENTAFHHNRNTGLEINNGGSYNTV 165
Query: 1013 VHCEIHH--------GQTGGIYVHE-NGLGQ-FIDNRIHSNNFAGVWITSNSNPTIRRNE 1062
++ + + G + G G F+ R N+ G + + + N
Sbjct: 166 INSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENS 225
Query: 1063 IYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEK 1122
+ + G + GN G + + + G +
Sbjct: 226 WAFRNGINYWNDSAFAGNGNGFKLGGNQAVG-------NHRITRSVAFGNVSKGFDQNNN 278
Query: 1123 GVGLIEENEGFFEANDIHNNRI 1144
G+ N N + N I
Sbjct: 279 AGGVTVIN------NTSYKNGI 294
Score = 39.4 bits (91), Expect = 0.007
Identities = 34/261 (13%), Positives = 64/261 (24%), Gaps = 46/261 (17%)
Query: 254 IHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNAL 313
+ + F ++ + E+ G Y+ G
Sbjct: 93 VFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIG---------------- 136
Query: 314 AGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVG-LIEENEVYANTLA----------GV 362
S + HH ++ G+ ++ G + ++ Y N G
Sbjct: 137 --------SHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGP 188
Query: 363 WITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNK 422
G R G +D+ + +N +G+ S GN
Sbjct: 189 KQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFR--NGINYWNDSAFAGNGNG 246
Query: 423 IWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWI-KTESNPTLKRNKIFD---GRDGGIC 478
G N G + ++ F N G T+ N + G
Sbjct: 247 FKLGGNQ-----AVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSN 301
Query: 479 IFNGGKGVLEENDIFRNAQAG 499
+ +G K N +
Sbjct: 302 VQSGQKHYFRNNVSLSASVTV 322
Score = 35.9 bits (82), Expect = 0.065
Identities = 30/279 (10%), Positives = 64/279 (22%), Gaps = 21/279 (7%)
Query: 576 GGIYVHENGLGQFIDNRIHSNNFAGVWIT----SNSNPTIRRNEIYNGH-QGGVYIFGEG 630
G Y G+ + + G I + + + Q + G
Sbjct: 55 PGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTG 114
Query: 631 RGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQL 690
A S + HH ++ G+ ++ G N
Sbjct: 115 DYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNY 174
Query: 691 LIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEI 750
G + + G G + W + G +++ ++ +N
Sbjct: 175 DPKKNGSMA--------DGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSW 226
Query: 751 FDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQS 810
W + K+ + G + F N G + +
Sbjct: 227 AFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITR-------SVAFGNVSKGFDQNNNA 279
Query: 811 HPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNNRFGG 849
+ N +N + + + NN
Sbjct: 280 GGVTVINNTSYKNGINYGFGSN-VQSGQKHYFRNNVSLS 317
Score = 34.0 bits (77), Expect = 0.29
Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 16/153 (10%)
Query: 710 SGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWI-KTESNPTL 768
S TG +G ++ G V G E N G+ I S T+
Sbjct: 107 SYGFYVTGDYWYFKGVEVTRAGYQGAYV-IGSHNTFENTAFHHNRNTGLEINNGGSYNTV 165
Query: 769 KRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVE 828
+ + D D F G R ++ G +
Sbjct: 166 INSDAYRNYDPKKNGSMA--------DGF-----GPKQKQGPGNRFVGCRAWENSDDGFD 212
Query: 829 -ITNNATATLEDNQIFNNRFGGLCLASGAKNAY 860
+ +E++ F N ++ A N
Sbjct: 213 LFDSPQKVVIENSWAFRNGINYWNDSAFAGNGN 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 0.001
Identities = 74/616 (12%), Positives = 158/616 (25%), Gaps = 182/616 (29%)
Query: 160 QHHKHYCLEVGEHATPTIDHC---IIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGL 216
HH H E GEH + I+ V + + DC+
Sbjct: 2 HHHHHMDFETGEH-----QYQYKDILS-------------VFEDAFVD--NF-DCK---- 36
Query: 217 YVTDYAQGLYEDNEI-----SRNALAG----IWV------------------KNYA---- 245
V D + + EI S++A++G W NY
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 246 -------NPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGE 298
P M RD +++ +F N + R + Y + +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYN----VSRLQPYLKLRQALLELRP 149
Query: 299 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVY------VHEKGVGLIEEN 352
+ ++ I G +G + K+ ++ + L
Sbjct: 150 AKNVL----IDGVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 353 EVYANTLAGVWITTGSAPVLRRNRIHSGKQ-VGVYFYDNGHGK-------LEDNDIFNHL 404
++ + W + + RIHS + + + +++ +N
Sbjct: 204 KLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 405 YSGVQI--RTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQN--EIFDNAMAGVWIKTES 460
+I T + + + + + + + L + + + +
Sbjct: 263 NLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQD 317
Query: 461 NP--TLKRNKIFDGRDGGICIFNGGKGVLEENDI---FRNAQAGVLISTQS------HPM 509
P L N + I + + + +++ L + P
Sbjct: 318 LPREVLTTNPRR------LSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 510 LRRNRIFDGFA---AGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVV 566
R FD + I LS + + + + + +
Sbjct: 370 EYRKM-FDRLSVFPPSAHIPTILLSLIWFDVI--KSDVMVV----VNKLHKYSLVE---- 418
Query: 567 HCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYI 626
+ I + +++ ++ N + H
Sbjct: 419 ----KQPKESTISIP----SIYLELKVKLENEYAL------------------H------ 446
Query: 627 FGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGK 686
R +++H Y N P + + H G + H K + E
Sbjct: 447 ----RSIVDH---Y-NIPKTFDSDDLIPPYLD-QYFY--SHIG-H-HLKNIEHPERMTLF 493
Query: 687 ENQLLIFIRFLQIKLI 702
L F RFL+ K+
Sbjct: 494 RMVFLDF-RFLEQKIR 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 0.001
Identities = 56/332 (16%), Positives = 90/332 (27%), Gaps = 147/332 (44%)
Query: 704 RA----RKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVW 759
RA + TY G I I+ N + + ++ GG I +N A ++
Sbjct: 1648 RADNHFKDTY-GFSILD----IVINNPV------NLTIHFGGEK---GKRIRENYSAMIF 1693
Query: 760 IKTESNPTLKRNKIFDGRDGGI--CIFNGGKGVLE--ENDIFRNAQAGVLISTQSHPMLR 815
+T + LK KIF + F KG+L + TQ P L
Sbjct: 1694 -ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-------------TQ--PAL- 1736
Query: 816 RNRIFDGFAAGVEITNNATATLEDNQIFNNRFGGLCLASGAKNAYLGHVTLKFSPEAPST 875
L+ + A + GH S
Sbjct: 1737 -------TLMEKAA----FEDLKSKGLIP-----------ADATFAGH-----S------ 1763
Query: 876 VQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYV 935
+GE+A A ++ V + I + V
Sbjct: 1764 ----------LGEYA----------------ALASLADV-----M---SIES----LVEV 1785
Query: 936 TDYAQGLYEDNEISRNALAGIWVKNYA----NPIMRRNHIHHGRDVGIFTFD-------- 983
+ +G+ + R+ L NY NP GR F+ +
Sbjct: 1786 V-FYRGMTMQVAVPRDELGR---SNYGMIAINP---------GRVAASFSQEALQYVVER 1832
Query: 984 --NGHGFF-E-ANDIHNNR-----IAGFEVKA 1006
G+ E N N AG +++A
Sbjct: 1833 VGKRTGWLVEIVNY--NVENQQYVAAG-DLRA 1861
Score = 40.8 bits (95), Expect = 0.004
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 28/135 (20%)
Query: 399 DIFN----HLYS--GVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMA 452
D++N H G I I+ N + + ++ GG I +N A
Sbjct: 1644 DVWNRADNHFKDTYGFSILD----IVINNPV------NLTIHFGGEK---GKRIRENYSA 1690
Query: 453 GVWIKTESNPTLKRNKIFDGRDGGI--CIFNGGKGVLEENDIFRNAQ-AGVLISTQSHPM 509
++ +T + LK KIF + F KG+L + Q A L+ +
Sbjct: 1691 MIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SATQFTQPALTLMEKAAFED 1746
Query: 510 LRRNRIFDGFA--AG 522
L+ + A AG
Sbjct: 1747 LKSKGLIPADATFAG 1761
Score = 34.6 bits (79), Expect = 0.27
Identities = 40/243 (16%), Positives = 70/243 (28%), Gaps = 59/243 (24%)
Query: 940 QGLYEDNEISRNALAGIWVK--NYANPIMRRNHIHHGRDV---GIFTFDNGHGFFEANDI 994
+G D+E + A + K Y + ++ + + V + F+ + + E NDI
Sbjct: 46 EGFAADDEPT--TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDI 101
Query: 995 HNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNS 1054
H + + T + E I N I + A S
Sbjct: 102 H---------------ALAAKLLQENDTTLVKTKE-----LIKNYITARIMAKRPFDKKS 141
Query: 1055 NPTIRRNEIYNGHQGGVY-IFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQ 1113
N + R + IFG G+G + Y L + + +V
Sbjct: 142 NSALFRAV--GEGNAQLVAIFG-GQGNTDD---YFEELRDLY--QTYHVLVGD------- 186
Query: 1114 HGGVYVHEKGVGLIEENEGFFEANDIHNNRIAGFEVKA-GANPTVVSGDETPRPAAVLVS 1172
+ L E +A + G + NP TP L+S
Sbjct: 187 ----LIKFSAETLSELIRTTLDAEKVFTQ---GLNILEWLENP-----SNTP-DKDYLLS 233
Query: 1173 CSV 1175
+
Sbjct: 234 IPI 236
Score = 33.1 bits (75), Expect = 0.67
Identities = 48/285 (16%), Positives = 82/285 (28%), Gaps = 113/285 (39%)
Query: 940 QG---------LYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFE 990
QG LY+ ++ +++ +W N A+ + G F
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQD----VW--NRADNHFKDT--------------YG---FS 1660
Query: 991 ANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLG----QFIDNRIHSNN-F 1045
DI N NP + IH G G + EN +D ++ + F
Sbjct: 1661 ILDIVIN-----------NPVNL--TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 1046 AGVWITSNSNPTIRRNEIYNGHQG---------------GVYIFG--EGRGLIEHNNIY- 1087
+ S S + +G F + +GLI + +
Sbjct: 1708 KEINEHSTSY-------TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 1088 G------NAL---AG-IQIRTSSDPIVR------HNKIHHGQHGGVYVHEKGVGLIEENE 1131
G AL A + I + + +V + + G G+I N
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQVAVPRDELGR-----SNYGMIAINP 1814
Query: 1132 G----FFEANDIHN--NRIA---GFEVKAGAN---P---TVVSGD 1161
G F + R+ G+ V+ N V +GD
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQYVAAGD 1858
Score = 33.1 bits (75), Expect = 0.71
Identities = 35/187 (18%), Positives = 52/187 (27%), Gaps = 66/187 (35%)
Query: 486 VLEENDIFRNAQAGVLISTQSHPM---LRRNRIF--------DGFAAGVEITNTP----- 529
L + + +L+ T S + L+ F +GFAA E T
Sbjct: 10 TLSHGSL----EHVLLVPTASFFIASQLQEQ--FNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 530 --------------------LSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCE 569
L+ L EN + E NDIH +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---------------ALAAKL 108
Query: 570 IHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVY-IFG 628
+ T + E I N I + A SN + R + IFG
Sbjct: 109 LQENDTTLVKTKE-----LIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFG 161
Query: 629 EGRGLIE 635
G+G +
Sbjct: 162 -GQGNTD 167
Score = 33.1 bits (75), Expect = 0.77
Identities = 50/341 (14%), Positives = 88/341 (25%), Gaps = 139/341 (40%)
Query: 78 LDHGD-ELGQSAP-LVFVHSGVYRGEF---LVLDSDVIIIGAAPGNVAESVILERDTEST 132
L HG E P F + + +F L ++ P AE V
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV--------- 61
Query: 133 VMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAV 192
K +LG+V+ P + +V ++C + +
Sbjct: 62 ------GK--FLGYVSSLVEPSKVG------QFD-QVLNLCLTEFENCYLEGNDI----- 101
Query: 193 CVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNY--ANPIMR 250
H A L ++N+ + +KNY A + +
Sbjct: 102 ------------HA--------------LAAKLLQENDTTLVK-TKELIKNYITARIMAK 134
Query: 251 RNHIHHGR----------DVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQG--GVYIFGE 298
R + + IF G QG Y F E
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVA-----IF----------------GGQGNTDDY-FEE 172
Query: 299 GRGLIEHNNIYGNALAGIQIRTSSD---PIVRHNKIHHGQHGGVYVHEKGVGLIEENEVY 355
L + Y + + I+ S++ ++R V +G+ ++E
Sbjct: 173 ---LRDLYQTYHVLVGDL-IKFSAETLSELIRTT------LDAEKVFTQGLNILE----- 217
Query: 356 ANTLAGVWITT----------GSAPVLRRNRIHSGKQVGVY 386
W+ S P+ S +GV
Sbjct: 218 -------WLENPSNTPDKDYLLSIPI-------SCPLIGVI 244
Score = 29.6 bits (66), Expect = 8.8
Identities = 25/197 (12%), Positives = 44/197 (22%), Gaps = 77/197 (39%)
Query: 791 LEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIF------N 844
LE NDI +A A L+ +++ + + + ++ +F N
Sbjct: 96 LEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 845 NR----FGGLCLASGAKNAYL-----------GHV---------TLK-FSPEAPSTVQHH 879
+ FGG G + Y V TL +
Sbjct: 154 AQLVAIFGG----QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 880 KHYC-----LEVGEHATPTID------------------H----C------------IIR 900
LE TP D H ++
Sbjct: 210 TQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 901 STSVVGAAVCVSGVCAS 917
+ + + A
Sbjct: 269 GATGHSQGLVTAVAIAE 285
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate;
HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter
heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Length = 506
Score = 39.3 bits (90), Expect = 0.007
Identities = 26/236 (11%), Positives = 56/236 (23%), Gaps = 28/236 (11%)
Query: 919 TLRHCDISDCENVGLYVTDYAQGLY----EDNEISRNALAGIWVKNYANPIMRRNHIHHG 974
+ C + + + I + K + ++ N+
Sbjct: 129 RITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTD---KITFDQVINLNNTARA 185
Query: 975 RDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQ 1034
G + + + + + + A + G Y ++ G
Sbjct: 186 IKDGSVGGPGMY-----HRVDHCFFSNPQKPGNAGGGI---------RIGYYRNDIGRCL 231
Query: 1035 FIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGN----A 1090
N + ITS S + Y QG + + +N GN
Sbjct: 232 VDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFG 291
Query: 1091 LAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGFFEANDIHNNRIAG 1146
G+ + S ++ N + + E + IA
Sbjct: 292 YGGMFV-WGSRHVIACNYFELS--ETIKSRGNAALYLNPGAMASEHALAFDMLIAN 344
Score = 38.9 bits (89), Expect = 0.009
Identities = 46/380 (12%), Positives = 96/380 (25%), Gaps = 40/380 (10%)
Query: 405 YSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLL-------EQNEIFDNAMAGVWIK 457
Y VQ+ ++ N G + + G + + F + +
Sbjct: 54 YKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAW 113
Query: 458 TESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFD 517
P L R E N + H + D
Sbjct: 114 KSHGPGLVAIYGSYNRITACVFDCFD----EANSAYITTSLTEDGKVPQHCRIDHCSFTD 169
Query: 518 GFAAGVEITNTPLSNLLINKENGFFEAND-IHNNRIAGFEVKAGANPTVVHCEIHHGQTG 576
I + + + G + + + + A +
Sbjct: 170 KITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGI---------RI 220
Query: 577 GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEH 636
G Y ++ G N + ITS S + Y QG + + +
Sbjct: 221 GYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAIN 280
Query: 637 NNIYGN----ALAGIQIRTSSDPIVRHNKIHHGQ----HGGVYVHEKGVGLIEENEGKEN 688
N GN G+ + S ++ N + G ++ + E+ +
Sbjct: 281 NFYIGNDQRFGYGGMFV-WGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFD 339
Query: 689 QLL----------IFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVY 738
L+ I F + + + ++ T +++GN + + +
Sbjct: 340 MLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFF 399
Query: 739 NGGLGLLEQNEIFDNAMAGV 758
+ +N N GV
Sbjct: 400 KDDYFIAGKNSWTGNVALGV 419
Score = 33.5 bits (75), Expect = 0.40
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 7/154 (4%)
Query: 300 RGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTL 359
E N+ Y + + H ++ ++
Sbjct: 136 DCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPG 195
Query: 360 AGVWIT--TGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQI--RTGSN 415
+ S P N G ++G Y D G ++ N +F S +I
Sbjct: 196 MYHRVDHCFFSNPQKPGNAGG-GIRIGYYRNDIGRCLVDSN-LFMRQDSEAEIITSKSQE 253
Query: 416 PIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDN 449
+ GN Q G + +G + N N
Sbjct: 254 NVYYGNTYLNCQ-GTMNFRHGDHQVAINNFYIGN 286
Score = 33.1 bits (74), Expect = 0.59
Identities = 25/232 (10%), Positives = 60/232 (25%), Gaps = 20/232 (8%)
Query: 616 IYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEK 675
I + G V+ G+ + + ++ L GI + + I G + +
Sbjct: 73 IKALNPGKVFFTGDAKVELRGEHLI---LEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNR 129
Query: 676 GVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGV 735
+ + + N I + + I
Sbjct: 130 ITACVFDCFDEANSAYITTSL--------------TEDGKVPQHCRIDHCSFTDKITFDQ 175
Query: 736 LVYNGGLGLLEQNEIFDNAMAGVWIK--TESNPTLKRNKIFDGRDGGICIFNGGKGVLEE 793
++ ++ + SNP N R G + G+ +++
Sbjct: 176 VINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIG-YYRNDIGRCLVDS 234
Query: 794 NDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNN 845
N R +I+++S + + + + +N N
Sbjct: 235 NLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGN 286
Score = 29.3 bits (64), Expect = 8.6
Identities = 21/204 (10%), Positives = 45/204 (22%), Gaps = 13/204 (6%)
Query: 927 DCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGH 986
+G Y D + L + N R + + + + + + + H
Sbjct: 216 GGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDH 275
Query: 987 GFFEANDIHNNRIAGFEVK---AGANPTVVHCEIHHGQTGGIY----------VHENGLG 1033
N N G+ + +T +
Sbjct: 276 QVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHA 335
Query: 1034 QFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAG 1093
D I +N F V + + + + +++ N + +
Sbjct: 336 LAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYV 395
Query: 1094 IQIRTSSDPIVRHNKIHHGQHGGV 1117
I N GV
Sbjct: 396 YPFFKDDYFIAGKNSWTGNVALGV 419
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE;
2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Length = 609
Score = 34.0 bits (77), Expect = 0.29
Identities = 33/256 (12%), Positives = 70/256 (27%), Gaps = 14/256 (5%)
Query: 349 IEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGV 408
I + E TL G+ IT G + + +E+ + G+
Sbjct: 147 IRDIEAVDCTLHGIDITCGG------LDYPYLGDGTTAPNPSENIWIENCEATGFGDDGI 200
Query: 409 QIRTGSNPIIR----GNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTL 464
I + G + +G ++ N G+ IK +
Sbjct: 201 TTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPA 260
Query: 465 KRNKIFDG---RDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAA 521
N +G + G + ++ S R F A
Sbjct: 261 AYNISINGHMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLVSIRPNNKRGFQDNAT 320
Query: 522 GVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVH 581
+ + ++IN G+ + ++ + + +A N ++ + ++
Sbjct: 321 PRVLAVSAYYGVVINGLTGYTDDPNLLTETVVSVQFRAR-NCSLNGVVLTGFSNSENGIY 379
Query: 582 ENGLGQFIDNRIHSNN 597
G + D SN
Sbjct: 380 VIGGSRGGDAVNISNV 395
Score = 32.1 bits (72), Expect = 1.2
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 944 EDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFE 1003
D E L GI + + D + + + E + G
Sbjct: 148 RDIEAVDCTLHGIDITC------GGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGIT 201
Query: 1004 VKAGANPTVVHCEIHHGQTG----GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIR 1059
+++C H + G + + + N + G+ I ++ +
Sbjct: 202 THHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPAA 261
Query: 1060 RNEIYNGH 1067
N NGH
Sbjct: 262 YNISINGH 269
>3gqn_A Preneck appendage protein; beta helix, beta barrel, ATP binding,
viral protein; HET: ATP; 2.15A {Bacillus phage PHI29}
PDB: 3suc_A*
Length = 772
Score = 33.7 bits (76), Expect = 0.41
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 944 EDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFE 1003
D E L GI + + D + + + E + G
Sbjct: 148 RDIEAVDCTLHGIDITC------GGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGIT 201
Query: 1004 VKAGANPTVVHCEIHHGQTG----GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIR 1059
+++C H + G + + + N + G+ I ++ +
Sbjct: 202 THHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPAA 261
Query: 1060 RNEIYNGH 1067
N NGH
Sbjct: 262 YNISINGH 269
Score = 31.0 bits (69), Expect = 3.2
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 526 TNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTG----GIYVH 581
+ EN + E + G +++C H + G +
Sbjct: 171 YLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEID 230
Query: 582 ENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGH 620
+ + N + G+ I ++ + N NGH
Sbjct: 231 DGSRHVVLSNNRSKGCYGGIEIKAHGDAPAAYNISINGH 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 33.8 bits (78), Expect = 0.41
Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 57/211 (27%)
Query: 261 GIFTFD--NGHIFPISNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQI 318
G++T+ + T + I +++ EG GL N +
Sbjct: 194 GLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLI-NPKTKEIKNYLH 252
Query: 319 RTSSDPIVRHNKIHH-----------GQHGGVYVHEKGVGLIE---ENEVYANTLA---- 360
S+ + N I G + ++ +G N V +L+
Sbjct: 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSV 312
Query: 361 ---------GVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIR 411
G+W+ T + G G+ +Y + F ++ +
Sbjct: 313 RSIFMDSQGGMWLGT-----------YFG---GLNYYHP------IRNRFKNIRNIPYKN 352
Query: 412 TGSNPIIRG------NKIW-GGQNGGVLVYN 435
+ S+ ++ +W G +GG+ +YN
Sbjct: 353 SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYN 383
Score = 31.5 bits (72), Expect = 1.8
Identities = 52/380 (13%), Positives = 107/380 (28%), Gaps = 77/380 (20%)
Query: 384 GVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIW-GGQNGGVLVYNGGLGLLE 442
G+ +D K D+ ++ + S +G++I+ G G+ Y+ E
Sbjct: 151 GLIMFDIKESKFIDDSFSTAMHKTIA----STLYRQGDQIYIGTSTDGLYTYSITQKTFE 206
Query: 443 QNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLE---ENDIFRNAQAG 499
+ + I I I + G G+ + +N
Sbjct: 207 K---VIPILGTKQI----------QAILQQSPTRIWVATEGAGLFLINPKTKEIKN---- 249
Query: 500 VLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKA 559
L S + + N I + + L I N + A +
Sbjct: 250 YLHSPSNPKSISSNYIRS-------LAMDSQNRLWIGTFNDLNIY-HEGTDSFASYSSNP 301
Query: 560 GANPTVVHCEIH------HGQ------TGGIYVHENGLGQFIDNRIHSNNFAGVWITSNS 607
N ++ + G GG+ + +F I + + S S
Sbjct: 302 VENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--KNIRNIPYK----NSLS 355
Query: 608 NPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHH--- 664
+ + I ++I GL +N I + S + N I
Sbjct: 356 DNVVS--CIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413
Query: 665 -GQHGGVYV--HEKGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTGSNPI 721
+ VY+ H G+ ++ N G+ ++ + + I
Sbjct: 414 DEKKSLVYIGTHAGGLSILHRNSGQ------------VENFNQRNSQLVNENVYA----I 457
Query: 722 IRGNK--IWGGQNGGVLVYN 739
+ + +W G ++ +N
Sbjct: 458 LPDGEGNLWLGTLSALVRFN 477
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic,
lipoprotein, outer membrane, carbohydrate esterase
family 8; 1.70A {Escherichia coli k-12}
Length = 422
Score = 32.7 bits (74), Expect = 0.75
Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 8/122 (6%)
Query: 60 VTSDPGRKLAHFDTIQAALDHGDELGQSAPLV-FVHSGVYRGEFLVLDSD---VIIIGAA 115
V G + TIQAA+D + V G Y+ + + + + + G
Sbjct: 79 VGPA-GTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQ-GTVYVPAAPGGITLYGT- 135
Query: 116 PGNVAESVILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATP 175
G V + + + + + + P +G +
Sbjct: 136 -GEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSA 194
Query: 176 TI 177
Sbjct: 195 VF 196
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A
{Daucus carota} SCOP: b.80.1.5
Length = 319
Score = 31.2 bits (71), Expect = 2.2
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 70 HFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSD---VIIIGAAPGNV 119
+ T+ A+ E ++ ++ + +GVYR E + + ++ +G +
Sbjct: 18 DYKTVSEAVAAAPEDSKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDGRTST 69
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix
degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB:
1ktw_A* 3lmw_A
Length = 464
Score = 31.0 bits (69), Expect = 2.6
Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 19/181 (10%)
Query: 239 IWVKNYANPIMRRNHIHHGRDVG---IFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYI 295
+ + N + I + + + + + N I R + N G I
Sbjct: 135 FKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLI 194
Query: 296 FGEGRGLIEHNNIYGNALAGIQIRTSSDP------------IVRHNKIHHGQHGGVYV-- 341
G I N++ +++ T + + + G V
Sbjct: 195 QTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKG-LAAVMFGP 253
Query: 342 HEKGVGLIEENEVYA-NTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDI 400
H G ++ V + + + V +G + +Q ++ G+
Sbjct: 254 HFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTP 313
Query: 401 F 401
+
Sbjct: 314 Y 314
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A
{Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A*
2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A
Length = 342
Score = 30.9 bits (70), Expect = 2.7
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 60 VTSDPGRKLAHFDTIQAALDHGDELGQSAP------LVFVHSGVYRGEFLVLDSDVIIIG 113
V+ F TI A+ SAP ++ + +GVY + +++ + G
Sbjct: 8 VSKS-SSDGKTFKTIADAIA-------SAPAGSTPFVILIKNGVYNERLTITRNNLHLKG 59
Query: 114 AAPGNV 119
+
Sbjct: 60 ESRNGA 65
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase,
hydrolase; 3.50A {Yersinia enterocolitica subsp}
Length = 364
Score = 30.9 bits (70), Expect = 2.9
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 70 HFDTIQAALDHGDELGQSAP------LVFVHSGVYRGEFLVLDSDVIIIGAAPGNV 119
F +I AAL SAP ++F+ +GVY V S V + G
Sbjct: 43 EFSSINAALK-------SAPKDDTPFIIFLKNGVYTERLEVARSHVTLKGENRDGT 91
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ;
2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A*
3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A*
Length = 368
Score = 30.5 bits (68), Expect = 3.2
Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 13/150 (8%)
Query: 14 DMPLYNPGGSLCFEFVPPEDSDHANPWKESFRQLYRGIHVRPGYKAVTSDPGRKLAH-FD 72
D+P FEF +D+A P +L+ +RP + A+ ++
Sbjct: 177 DIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWE 236
Query: 73 TIQAALDHGDELGQSAPLVFVHSGVYRGEFL--VLDSDVI-IIGA-----APGNVAESVI 124
AL L V G ++ DV+ + G
Sbjct: 237 FTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAG---TETA 293
Query: 125 LERDTESTVMFV-EGAKNAYLGHVTLKFSP 153
+ STV V EGA + T K
Sbjct: 294 TRNEVGSTVFQVFEGAGAVVMNGETTKLEK 323
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix
bundle, hydrolase/hydrolase inhibitor complex; 1.90A
{Solanum lycopersicum}
Length = 317
Score = 30.4 bits (69), Expect = 3.4
Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 70 HFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSD---VIIIGAAPGNV 119
+ T+ A+ + ++ +++V G Y+ E + + S+ ++I+G
Sbjct: 14 DYQTLAEAVAAAPDKSKTRYVIYVKRGTYK-ENVEVASNKMNLMIVGDGMYAT 65
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 30.6 bits (70), Expect = 3.4
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
+A+ + + + +D G+ TFD+
Sbjct: 89 FAHTMKTIDDLIFAKDQGVDIATFDS 114
Score = 30.6 bits (70), Expect = 3.4
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
+A+ + + + +D G+ TFD+
Sbjct: 89 FAHTMKTIDDLIFAKDQGVDIATFDS 114
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY
beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei}
SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A*
1njj_A*
Length = 425
Score = 30.3 bits (69), Expect = 3.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
YANP + +HI + RD G+ TFD
Sbjct: 110 YANPCKQISHIRYARDSGVDVMTFDC 135
Score = 30.3 bits (69), Expect = 3.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
YANP + +HI + RD G+ TFD
Sbjct: 110 YANPCKQISHIRYARDSGVDVMTFDC 135
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET:
PLP; 1.90A {Homo sapiens}
Length = 471
Score = 30.4 bits (69), Expect = 3.8
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
YANP + + I + + G+ TFD+
Sbjct: 120 YANPCKQVSQIKYAANNGVQMMTFDS 145
Score = 30.4 bits (69), Expect = 3.8
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
YANP + + I + + G+ TFD+
Sbjct: 120 YANPCKQVSQIKYAANNGVQMMTFDS 145
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP,
group IV decarboxylase, polyami parasitical,
chemotherapy target, putrescine; HET: PLP; 1.60A {Mus
musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Length = 424
Score = 30.3 bits (69), Expect = 3.8
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
YANP + + I + G+ TFD+
Sbjct: 110 YANPCKQVSQIKYAASNGVQMMTFDS 135
Score = 30.3 bits (69), Expect = 3.8
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
YANP + + I + G+ TFD+
Sbjct: 110 YANPCKQVSQIKYAASNGVQMMTFDS 135
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA;
1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A
2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*
Length = 399
Score = 29.9 bits (66), Expect = 4.9
Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 24/195 (12%)
Query: 467 NKIFDGRDGGICIFNGGKGVLEENDIFRNAQA------GVLISTQSHPMLRRNRIFDGF- 519
N G + G + +N I RN + N +D
Sbjct: 128 NTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNIT 187
Query: 520 ---AAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANP-TVVHCEIHHGQT 575
+ I + ++ + + + GAN T+ + H
Sbjct: 188 INGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDK 247
Query: 576 GGIYVHENGLGQFIDNR---IHSNNFAGVWITSNSNPTIRR-------NEIYNGHQGGVY 625
I+ + +H N + + P +R N Y
Sbjct: 248 SSIFGSSDSKTSDDGKLKITLHHNRYKN---IVQAAPRVRFGQVHVYNNYYEGSTSSSSY 304
Query: 626 IFGEGRGLIEHNNIY 640
F G+ + + IY
Sbjct: 305 PFSYAWGIGKSSKIY 319
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 29.9 bits (68), Expect = 5.3
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
+ +PI R I G F DN
Sbjct: 127 HTHPIKRDADIRDALAYGCNVFVVDN 152
Score = 29.9 bits (68), Expect = 5.3
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
+ +PI R I G F DN
Sbjct: 127 HTHPIKRDADIRDALAYGCNVFVVDN 152
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB:
2qxz_A 2qx3_A
Length = 330
Score = 29.3 bits (65), Expect = 7.3
Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 22/217 (10%)
Query: 451 MAGVWIKTESNPTLK--RNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHP 508
+ W +K + G +G F N I +N G+L +
Sbjct: 55 VCAQWKLPAKTVQIKNKSDVTIKGANGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDAD 114
Query: 509 MLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGA-NPTVVH 567
+ G + + + + + L + D G ++K G + TV +
Sbjct: 115 SISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFD------GGIDMKKGVHHVTVSY 168
Query: 568 CEIHHGQTGGIYVHENGLGQFIDNRI--HSNNFAGVWITSNSNPTIRR-------NEIYN 618
+++ Q + + + + R H N F + P R N N
Sbjct: 169 NYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFEN---VESRVPLQRFGLSHIYNNYFNN 225
Query: 619 GHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDP 655
G+ + G IE +N + N + R SS+
Sbjct: 226 VTTSGINVRMGGIAKIE-SNYFENIKNPVTSRDSSEI 261
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro;
HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*
Length = 549
Score = 29.5 bits (65), Expect = 7.4
Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 33/264 (12%)
Query: 427 QNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGV 486
+ +V+N G+ ++ + + W+ +K F + G GV
Sbjct: 197 TSASTVVFNPGVYYFTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKAS--GHGV 254
Query: 487 LE------ENDIFRNAQAGVLISTQSHPMLRRNRIFDGFA---AGVEITNTPLSNLLINK 537
L D Q + M R GV ++ P +++ +
Sbjct: 255 LSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSG 314
Query: 538 ENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNN 597
+ + + + G +GQT G+ ++ + + + + +
Sbjct: 315 NSLDLITCRVDDYKQVG---------------AFYGQTDGLEMYPGTI---LQDVFYHTD 356
Query: 598 FAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEH---NNIYGNALAGIQIRTSSD 654
G+ + SN T R ++ V FG E+ +N+ A +
Sbjct: 357 DDGLKMYY-SNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQAYANAGNNPG 415
Query: 655 PIVRHNKIHHGQHGGVYVHEKGVG 678
N + G H G
Sbjct: 416 IFGAVNNYLYAPDGLSSNHSTGNS 439
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 29.4 bits (65), Expect = 7.7
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 105 LDSDVIIIGAAP-GNVAESVILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHK 163
SDVII+GA G A VI + + V +E + A G L + ++
Sbjct: 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE-SSVAPGGGSWLGGQLFSAMVMRKPA 122
Query: 164 HYCLE 168
H L+
Sbjct: 123 HLFLQ 127
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 28.4 bits (63), Expect = 8.6
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 75 QAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAPGN 118
++A+ + L + L+ V G G +LD + G P +
Sbjct: 42 ESAVSGVEGLPPGSALLVVKRGPNAGSRFLLDQAITSAGRHPDS 85
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet
domain, structural genomics, israel structural
proteomics center, ISPC; 2.05A {Mus musculus}
Length = 448
Score = 29.2 bits (66), Expect = 8.7
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 244 YANPIMRRNHIHHGRDVGI--FTFDN 267
+ +P + + I + VG+ T DN
Sbjct: 110 FTSPCKQVSQIKYAAKVGVNIMTCDN 135
Score = 29.2 bits (66), Expect = 8.7
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 961 YANPIMRRNHIHHGRDVGI--FTFDN 984
+ +P + + I + VG+ T DN
Sbjct: 110 FTSPCKQVSQIKYAAKVGVNIMTCDN 135
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 29.2 bits (66), Expect = 8.7
Identities = 76/484 (15%), Positives = 138/484 (28%), Gaps = 114/484 (23%)
Query: 373 RRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVL 432
++ G G+ Y+ D + + + ++G+ +W G G+
Sbjct: 72 DNTYLYMGTDNGILVYN------YRADRYEQPETDFPTDVRTM-ALQGDTLWLGALNGLY 124
Query: 433 VYNGGLGLLEQNEIFDNAMAGVWIKT--ESNPTLKRNKIFDGRDGGICIFNGGKGVLEEN 490
Y L + N + I + + K N+I+ G G+C + G E
Sbjct: 125 TYQLQSRKLTSFDTRRNGLPNNTIYSIIRT----KDNQIYVGTYNGLCRYIPSNGKFEGI 180
Query: 491 DIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENG-FFEANDIHN 549
+ ++ L R ++ G + G + HN
Sbjct: 181 PLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYL---------FQYFPSTGQIKQTEAFHN 231
Query: 550 NRIAGFEVKAGANPTVVHCEIHHGQ-----TGGIYVHENGLGQFIDNRIHSNNFAGVWIT 604
N I +G G+YV+ N S N I
Sbjct: 232 NSIKSL------------ALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRN-----IQ 274
Query: 605 SNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHH 664
S +N I I+ + +++ G G+ + Y +AL I I + N+ +
Sbjct: 275 SLTNNIIWN--IFADQEHNIWL-GTDYGIS--LSRYNSALQFIPISQITGTG-DGNQFY- 327
Query: 665 GQHGGVYVHEKG---VGLIEENEGKENQLLIFIRFLQIKLIPRARKTYSGVQIRTG---- 717
++ KG G N I+ A + + + R G
Sbjct: 328 ----SLFRDSKGFYWFGG--ANGL-------------IRFTDPAGERHDAIWYRMGDKTY 368
Query: 718 --SNPIIRG------NKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLK 769
S+ IR ++W +G + Y+ I DN T
Sbjct: 369 PLSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQFIHYNIVDN-----------TGTYN 417
Query: 770 RNKIF------DGR------DGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRN 817
N + G+ GGI + + K + + + Q + H L
Sbjct: 418 TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQ-----NYSVHNGLSGM 472
Query: 818 RIFD 821
I
Sbjct: 473 FINQ 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.429
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,296,083
Number of extensions: 1264763
Number of successful extensions: 3093
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2888
Number of HSP's successfully gapped: 144
Length of query: 1175
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1071
Effective length of database: 3,798,009
Effective search space: 4067667639
Effective search space used: 4067667639
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)