RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy675
(1175 letters)
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus
[TaxId: 984]}
Length = 481
Score = 55.3 bits (132), Expect = 3e-08
Identities = 47/413 (11%), Positives = 104/413 (25%), Gaps = 55/413 (13%)
Query: 72 DTIQAALDH---GDELGQSAPLVFVHSGVYRGEFLVL------DSDVIIIGAAPGNVAES 122
+T+ + G V + G Y+ L++ + I PG
Sbjct: 7 ETLYQVVKEVKPGGL-------VQIADGTYKDVQLIVSNSGKSGLPITIKALNPG----K 55
Query: 123 VILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCII 182
V D + + ++ L + K A + H + + I C+
Sbjct: 56 VFFTGDAKVEL----RGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYN-RITACVF 110
Query: 183 RSTSVVGAAVCVSGV------CASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNAL 236
+A + + + HC +D + +
Sbjct: 111 DCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPA 170
Query: 237 AGIWV-KNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYI 295
V + + + + G +G + + N I
Sbjct: 171 MYHRVDHCFFSNPQKPGNAGGGIRIGYYRN--------DIGRCLVDSNLFMRQDSEAEII 222
Query: 296 FGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQH----GGVYVHEKGVGLIEE 351
+ + + + N Y N + R + +N GG++V +I
Sbjct: 223 TSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRH-VIAC 281
Query: 352 NEVYANTLAGVWITTGSAPV----------LRRNRIHSGKQVGVYFYDNGHGKLEDNDIF 401
N + I + + V Y L++
Sbjct: 282 NYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKE 341
Query: 402 NHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGV 454
+ ++ T +++GN + + + + +N N GV
Sbjct: 342 YCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGV 394
Score = 54.5 bits (130), Expect = 5e-08
Identities = 22/193 (11%), Positives = 43/193 (22%), Gaps = 27/193 (13%)
Query: 930 NVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFF 989
++ + + + ++ G + FF
Sbjct: 124 SLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHC---FF 180
Query: 990 EANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVW 1049
N G + G Y ++ G N +
Sbjct: 181 SNPQKPGNAGGGIRI-------------------GYYRNDIGRCLVDSNLFMRQDSEAEI 221
Query: 1050 ITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGN----ALAGIQIRTSSDPIVR 1105
ITS S + Y QG + + +N GN G+ + S ++
Sbjct: 222 ITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFV-WGSRHVIA 280
Query: 1106 HNKIHHGQHGGVY 1118
N +
Sbjct: 281 CNYFELSETIKSR 293
Score = 52.2 bits (124), Expect = 3e-07
Identities = 41/322 (12%), Positives = 78/322 (24%), Gaps = 30/322 (9%)
Query: 466 RNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEI 525
F + I + L N + V
Sbjct: 74 EGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQ 133
Query: 526 TNTPLSNLLINKENG--FFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTG------- 576
+K N+ G V HC + Q
Sbjct: 134 HCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGI 193
Query: 577 --GIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLI 634
G Y ++ G N + ITS S + Y QG + +
Sbjct: 194 RIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVA 253
Query: 635 EHNNIYGN----ALAGIQIRTSSDPIVRHNKIHHGQ----HGGVYVHEKGVGLIEENEGK 686
+N GN G+ + S ++ N + G ++ + E+
Sbjct: 254 INNFYIGNDQRFGYGGMFV-WGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALA 312
Query: 687 ENQLL----------IFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVL 736
+ L+ I F + + + ++ T +++GN + +
Sbjct: 313 FDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYP 372
Query: 737 VYNGGLGLLEQNEIFDNAMAGV 758
+ + +N N GV
Sbjct: 373 FFKDDYFIAGKNSWTGNVALGV 394
Score = 46.8 bits (110), Expect = 1e-05
Identities = 54/379 (14%), Positives = 92/379 (24%), Gaps = 47/379 (12%)
Query: 474 DGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNL 533
G + G+ ++ E F++ + P L +N
Sbjct: 59 TGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANS 118
Query: 534 LINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRI 593
+ + + RI HC T ++ N + I +
Sbjct: 119 AYITTSLTEDGKVPQHCRID-------------HCSFTDKITFDQVINLNNTARAIKDGS 165
Query: 594 HSNNFAGVWITSN--SNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYG-NALAGIQIR 650
+ SNP N G + G Y GR L++ N ++ A I
Sbjct: 166 VGGPAMYHRVDHCFFSNPQKPGNAG-GGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITS 224
Query: 651 TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPRARKTYS 710
S + + N + Q + H + N N Y
Sbjct: 225 KSQENVYYGNTYLNCQGTMNFRHGDH-QVAINNFYIGNDQRFG---------------YG 268
Query: 711 GVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKR 770
G+ + GS +I N + G L + A + +
Sbjct: 269 GMFV-WGSRHVIACNYFELSETIK---SRGNAALYLNPGAMASEHALA-----FDMLIAN 319
Query: 771 NKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEIT 830
N + G I + N + T ML+ N F
Sbjct: 320 NAFINVN--GYAIHFNPLDERRKEYCAAN---RLKFETPHQLMLKGNLFFKDKPYVYPFF 374
Query: 831 NNATATLEDNQIFNNRFGG 849
+ N N G
Sbjct: 375 KDDYFIAGKNSWTGNVALG 393
Score = 33.3 bits (75), Expect = 0.18
Identities = 32/336 (9%), Positives = 73/336 (21%), Gaps = 67/336 (19%)
Query: 848 GGLCLASGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGA 907
G + ++ L + K A + H + + I C+ +
Sbjct: 60 GDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYN-RITACVFDCFDEANS 118
Query: 908 AVCVSGV------CASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWV-KN 960
A + + + HC +D + + V
Sbjct: 119 AYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHC 178
Query: 961 YANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHG 1020
+ + + + G +G + D G ++N + + + V + +
Sbjct: 179 FFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLN 238
Query: 1021 QTGGIYVHENGLGQFIDNRIHSNNF-----------AGVWITSN---------------- 1053
G + I+N N+ + I N
Sbjct: 239 CQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAAL 298
Query: 1054 --------------SNPTIRRNEIYNGHQGGVYIFGEGRG------------------LI 1081
+ I N N + ++ ++
Sbjct: 299 YLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLML 358
Query: 1082 EHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGV 1117
+ N + + I N GV
Sbjct: 359 KGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGV 394
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi
[TaxId: 556]}
Length = 400
Score = 47.0 bits (110), Expect = 1e-05
Identities = 33/335 (9%), Positives = 74/335 (22%), Gaps = 32/335 (9%)
Query: 62 SDPGRKLAHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAPGNVAE 121
S+ G + AA+ L+ + G Y + + I + + A
Sbjct: 26 SNNGSSFNAPMSFSAAMA----AVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAP 81
Query: 122 SVILERDTESTV----MFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTI 177
+ + V A G Y + T
Sbjct: 82 IYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTF 141
Query: 178 DHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENV----------GLYVTDYAQGLYE 227
++ G + ++ + T+ + D + G +
Sbjct: 142 ENTAFHHNRNTG--LEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFV 199
Query: 228 DNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIF--------PISNSNPT 279
N+ G + + ++ N + + + N
Sbjct: 200 GCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHR 259
Query: 280 IRRNEIYNGHQGGVYIFGEGRGLIEHN----NIYGNALAGIQIRTSSDPIVRHNKIHHGQ 335
I R+ + G G+ N N G +++ R+N
Sbjct: 260 ITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSAS 319
Query: 336 HGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAP 370
K A+ + + +
Sbjct: 320 VTVSNADAKSNSWDTGPAASASDFVSLDTSLATVS 354
Score = 42.0 bits (97), Expect = 4e-04
Identities = 24/238 (10%), Positives = 46/238 (19%), Gaps = 14/238 (5%)
Query: 233 RNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNS---NPTIRRNEIYNGH 289
A ++ HH R+ G+ + G + NS +
Sbjct: 125 TRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMAD 184
Query: 290 QGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLI 349
G + N+ G + S +V N +
Sbjct: 185 GFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWND------- 237
Query: 350 EENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH----LY 405
N + R+ G +N G N+
Sbjct: 238 SAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYG 297
Query: 406 SGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPT 463
G +++G R N + + +
Sbjct: 298 FGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSR 355
Score = 40.1 bits (92), Expect = 0.002
Identities = 30/222 (13%), Positives = 49/222 (22%), Gaps = 18/222 (8%)
Query: 466 RNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEI 525
+ G + A SH G+EI
Sbjct: 97 SFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEI 156
Query: 526 TNTPLSNLLIN--KENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHEN 583
N N +IN + + G + K G V C G + ++
Sbjct: 157 NNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDS 216
Query: 584 GLGQFIDNRIHSNNFAGVWITSNS----------------NPTIRRNEIYNGHQGGVYIF 627
I+N N W S N I R+ + G
Sbjct: 217 PQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQN 276
Query: 628 GEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGG 669
G+ NN ++ +H ++
Sbjct: 277 NNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSA 318
Score = 37.0 bits (84), Expect = 0.012
Identities = 32/216 (14%), Positives = 56/216 (25%), Gaps = 21/216 (9%)
Query: 950 RNALAGIWVKNYANPIMRRNHIHHGRDVGI-FTFDNGHGFFEANDIHNNRIA-------- 1000
A ++ HH R+ G+ + +D + N
Sbjct: 125 TRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMAD 184
Query: 1001 --GFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTI 1058
G + K G V C G + ++ I+N N W S
Sbjct: 185 GFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFA--G 242
Query: 1059 RRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVY 1118
N G V G I + +GN G ++ + N +
Sbjct: 243 NGNGFKLGGNQAV-----GNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYG 297
Query: 1119 VHEKGVGLIEENEGFFEANDIHNNRIAGFEVKAGAN 1154
G + + +F N + + A +N
Sbjct: 298 F---GSNVQSGQKHYFRNNVSLSASVTVSNADAKSN 330
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/178 (10%), Positives = 42/178 (23%), Gaps = 27/178 (15%)
Query: 984 NGHGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSN 1043
G ++ G++ T + HH + G+ ++ G + N
Sbjct: 113 TGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYR 172
Query: 1044 NFA-----------GVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNI------ 1086
N+ G + G +F + ++ N+
Sbjct: 173 NYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGI 232
Query: 1087 ----------YGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGFF 1134
GN + + + + G + G+ N +
Sbjct: 233 NYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSY 290
Score = 32.4 bits (72), Expect = 0.34
Identities = 30/279 (10%), Positives = 63/279 (22%), Gaps = 21/279 (7%)
Query: 576 GGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIR-----RNEIYNGHQGGVYIFGEG 630
G Y G+ + + G I + R Q + G
Sbjct: 55 PGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTG 114
Query: 631 RGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQL 690
A S + HH ++ G+ ++ G N
Sbjct: 115 DYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNY 174
Query: 691 LIFIRFLQIKLIPRARKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEI 750
+ G + + G G + W + G +++ ++ +N
Sbjct: 175 DPKKNG--------SMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSW 226
Query: 751 FDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQS 810
W + K+ + G + F N G + +
Sbjct: 227 AFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRIT-------RSVAFGNVSKGFDQNNNA 279
Query: 811 HPMLRRNRIFDGFAAGVEITNNATATLEDNQIFNNRFGG 849
+ N + + + + NN
Sbjct: 280 GGVTVINNTSYKNGINY-GFGSNVQSGQKHYFRNNVSLS 317
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
cedar (Juniperus ashei) [TaxId: 13101]}
Length = 346
Score = 35.4 bits (81), Expect = 0.033
Identities = 20/161 (12%), Positives = 47/161 (29%), Gaps = 9/161 (5%)
Query: 955 GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVH 1014
++++ ++ I+ HIH + +H ++ N + H
Sbjct: 107 CLFMRKVSHVILHSLHIHGCNTSVL-GDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDH 165
Query: 1015 CEIHHGQTGGIYVHENGLGQFIDN-RIHSNNFAGVW-------ITSNSNPTIRRNEIYNG 1066
+ G I V G I N +++ + + T+ N+
Sbjct: 166 NSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPN 225
Query: 1067 HQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHN 1107
+ G + +NN + I ++ + N
Sbjct: 226 AGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGN 266
Score = 32.3 bits (73), Expect = 0.31
Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 24/206 (11%)
Query: 446 IFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLE---ENDIFRNAQAGVLI 502
IF M IK + + +K DGR + + NGG + + I + + I
Sbjct: 71 IFSQNMN---IKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS----LHI 123
Query: 503 STQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGA- 561
+ +L + + + + N N + + N + + +V G+
Sbjct: 124 HGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGST 183
Query: 562 NPTVVHCEIHHGQTGGIYVHENGLGQFIDNRI--HSNNFAGVWITSNSNPTIRR------ 613
T+ + + + H++ ++ N F + R
Sbjct: 184 GITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQF---GPNAGQRMPRARYGLVHV 240
Query: 614 --NEIYNGHQGGVYIFGEGRGLIEHN 637
N + + L E N
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGN 266
Score = 31.6 bits (71), Expect = 0.61
Identities = 21/186 (11%), Positives = 53/186 (28%), Gaps = 28/186 (15%)
Query: 238 GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFG 297
++++ ++ I+ HIH + + +I ++ + +
Sbjct: 107 CLFMRKVSHVILHSLHIHGCNTSVL---------GDVLVSESIGVEPVHAQDGDAITMRN 157
Query: 298 EGRGLIEHNNIYGNALAGIQIRTSSDPI-VRHNKIHHGQHGGVYVHEKGVGLIEENEV-Y 355
I+HN++ + I + S I + +N + + H+ + +V
Sbjct: 158 VTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTV 217
Query: 356 ANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSN 415
A G R G + +N+ + +
Sbjct: 218 AFNQ--FGPNAGQRMPRAR---------------YGLVHVANNNYDPWNIYAIGGSSNPT 260
Query: 416 PIIRGN 421
+ GN
Sbjct: 261 ILSEGN 266
Score = 28.5 bits (63), Expect = 5.7
Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 28/185 (15%)
Query: 646 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEGKENQLLIFIRFLQIKLIPRA 705
+ +R S I+ IH + G L+ E+ G E P
Sbjct: 107 CLFMRKVSHVILHSLHIHGCNTSVL-----GDVLVSESIGVE---------------PVH 146
Query: 706 RKTYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDN--------AMAG 757
+ + +R +N I N + +G + V G G+ N F N
Sbjct: 147 AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDT 206
Query: 758 VWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRN 817
T+ N+ + G + N+ + S+ + N
Sbjct: 207 YDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGN 266
Query: 818 RIFDG 822
Sbjct: 267 SFTAP 271
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia
chrysanthemi [TaxId: 556]}
Length = 342
Score = 33.2 bits (75), Expect = 0.16
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 57 YKAVTSDPGRKLAHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAP 116
Y AV S F TI A+ G + ++ + +GVY + +++ + G +
Sbjct: 4 YNAVVSKSSSDGKTFKTIADAIASAPA-GSTPFVILIKNGVYNERLTITRNNLHLKGESR 62
Query: 117 GNV 119
Sbjct: 63 NGA 65
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId:
5061]}
Length = 359
Score = 32.4 bits (73), Expect = 0.31
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 11/136 (8%)
Query: 955 GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVH 1014
I + + + + + NN I G +
Sbjct: 155 AITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRV---SLTNNYIDG------VSDYSAT 205
Query: 1015 CEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIF 1074
C+ +H + + + N I+ + + N+ N Y+ I
Sbjct: 206 CDGYHYWAIYLDGDADLVT-MKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIG 264
Query: 1075 GEGRGLIEHNNIYGNA 1090
G L E N++ N
Sbjct: 265 EGGYVLAE-GNVFQNV 279
Score = 30.9 bits (69), Expect = 0.88
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 13/129 (10%)
Query: 306 NNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLI-EENEVYANTLA---- 360
N Y I + + H + + N
Sbjct: 146 NPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSAT 205
Query: 361 -------GVWITTGSAPV-LRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRT 412
+++ + V ++ N I+ DN +N ++ +I
Sbjct: 206 CDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGE 265
Query: 413 GSNPIIRGN 421
G + GN
Sbjct: 266 GGYVLAEGN 274
Score = 30.5 bits (68), Expect = 1.1
Identities = 29/246 (11%), Positives = 57/246 (23%), Gaps = 34/246 (13%)
Query: 412 TGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFD 471
+ G WG + + + + + T+ NK
Sbjct: 54 SEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLI 113
Query: 472 GRDGGICIFNGGKGVLEE--NDIFRN------------AQAGVLISTQSHPMLRRNRIFD 517
G I G ++ N I +N + + +
Sbjct: 114 GEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTAR 173
Query: 518 GFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQTGG 577
+ T N + N +D C+ +H
Sbjct: 174 I-GRQHYVLGTSADNRVSLTNNYIDGVSDY-----------------SATCDGYHYWAIY 215
Query: 578 IYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHN 637
+ + + N I+ + + N+ N Y+ I G L E
Sbjct: 216 LDGDADLVT-MKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAE-G 273
Query: 638 NIYGNA 643
N++ N
Sbjct: 274 NVFQNV 279
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus
carota) [TaxId: 4039]}
Length = 319
Score = 31.8 bits (72), Expect = 0.42
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 69 AHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSD---VIIIGAAPGNV 119
+ T+ A+ E ++ ++ + +GVYR E + + ++ +G +
Sbjct: 17 GDYKTVSEAVAAAPEDSKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDGRTST 69
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C
[TaxId: 556]}
Length = 353
Score = 31.7 bits (71), Expect = 0.57
Identities = 30/207 (14%), Positives = 64/207 (30%), Gaps = 12/207 (5%)
Query: 234 NALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGV 293
+A GIW+K ++ +++ I + D I + N + NE++ +
Sbjct: 100 SANFGIWIKKSSDVVVQNMRIGYLPGGAK---DGDMIRVDDSPNVWVDHNELFAANHECD 156
Query: 294 YIFGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENE 353
+I G + + S + I K+ + G + +
Sbjct: 157 GTPDNDTTFESAVDIKGASNT---VTVSYNYIHGVKKVGLDGSS---SSDTGRNITYHHN 210
Query: 354 VYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH---LYSGVQI 410
Y + A + + G N + G+ NG +E+N + S
Sbjct: 211 YYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDG 270
Query: 411 RTGSNPIIRGNKIWGGQNGGVLVYNGG 437
+ +++GN I +
Sbjct: 271 KNFGTWVLKGNNITKPADFSTYSITWT 297
Score = 29.0 bits (64), Expect = 3.4
Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 23/174 (13%)
Query: 951 NALAGIWVKNYANPIMRRNHIHHGRD-------VGIFTFDN-----------GHGFFEAN 992
+A GIW+K ++ +++ I + + + N H
Sbjct: 100 SANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTP 159
Query: 993 DIHNNRIAGFEVKAGA-NPTVVHCEIHHGQTGGIYVHENGLGQF---IDNRIHSNNFAGV 1048
D + ++K + TV + IH + G+ + + +++ A +
Sbjct: 160 DNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 1049 WITSNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTSSDP 1102
+ N N G+ + G+ LIE NN + A+ + R
Sbjct: 220 PLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIE-NNWFEKAINPVTSRYDGKN 272
Score = 28.6 bits (63), Expect = 4.2
Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 24/275 (8%)
Query: 257 GRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGI 316
G + G+ + N+ + +G I N +A GI
Sbjct: 47 GGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANG-SSANFGI 105
Query: 317 QIRTSSDPIVRHNKIHHGQHG-----GVYVHEKGVGLIEENEVYAN-------------T 358
I+ SSD +V++ +I + G + V + ++ NE++A
Sbjct: 106 WIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTF 165
Query: 359 LAGVWITTGSAPV-LRRNRIHSGKQVGVYFY---DNGHGKLEDNDIFNHLYSGVQIRTGS 414
+ V I S V + N IH K+VG+ D G ++ +N + + + ++ G
Sbjct: 166 ESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGG 225
Query: 415 NPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRD 474
N G+ V G L+E N F+ A+ V + + +
Sbjct: 226 LVHAYNNLYTNITGSGLNVRQNGQALIENN-WFEKAINPVTSRYDGKNFGTWVLKGNNIT 284
Query: 475 GGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPM 509
+ + NA + T
Sbjct: 285 KPADFSTYSITWTADTKPYVNADSWTSTGTFPTVA 319
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId:
1423]}
Length = 399
Score = 30.1 bits (67), Expect = 1.5
Identities = 25/195 (12%), Positives = 46/195 (23%), Gaps = 24/195 (12%)
Query: 467 NKIFDGRDGGICIFNGGKGVLEENDIFRN------AQAGVLISTQSHPMLRRNRIFDGF- 519
N G + G + +N I RN N +D
Sbjct: 128 NTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNIT 187
Query: 520 ---AAGVEITNTPLSNLLINKENGFFEANDIHNNRIAGFEVKAGA-NPTVVHCEIHHGQT 575
+ I + ++ + + + GA T+ + H
Sbjct: 188 INGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDK 247
Query: 576 GGIYVHENGLGQFIDNR---IHSNNFAGVWITSNSNPTIRR-------NEIYNGHQGGVY 625
I+ + +H N + P +R N Y
Sbjct: 248 SSIFGSSDSKTSDDGKLKITLHHNRYKN---IVQRAPRVRFGQVHVYNNYYEGSTSSSSY 304
Query: 626 IFGEGRGLIEHNNIY 640
F G+ + + IY
Sbjct: 305 PFSYAWGIGKSSKIY 319
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId:
5061]}
Length = 359
Score = 30.1 bits (67), Expect = 1.8
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 11/136 (8%)
Query: 955 GIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHGFFEANDIHNNRIAGFEVKAGANPTVVH 1014
I V + + I + I + I G +
Sbjct: 155 AITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRV---TISYSLIDG------RSDYSAT 205
Query: 1015 CEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIF 1074
C HH + + + N ++ + + N+ N +N I
Sbjct: 206 CNGHHYWGVYLDGSNDMVT-LKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIG 264
Query: 1075 GEGRGLIEHNNIYGNA 1090
G L E N++ +
Sbjct: 265 TGGYVLAE-GNVFQDV 279
>d1en2a2 g.3.1.1 (A:46-86) Isolectin VI {Stinging nettle (Urtica
dioica), UDA [TaxId: 3501]}
Length = 41
Score = 25.9 bits (57), Expect = 3.0
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 188 VGAAVCVSGVCASP------TLRHCDISDCEN 213
VG C C S +C S C+
Sbjct: 8 VGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQY 39
Score = 25.9 bits (57), Expect = 3.0
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 905 VGAAVCVSGVCASP------TLRHCDISDCEN 930
VG C C S +C S C+
Sbjct: 8 VGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQY 39
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 27.6 bits (60), Expect = 8.3
Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 12/171 (7%)
Query: 108 DVIIIGAAPGNVAESVILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCL 167
D+++IGA G + + V ++ K P + +
Sbjct: 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK---------HHGPPHYAALGGTCVNVG 55
Query: 168 EVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYE 227
V + T + + G + P + + + V Y +
Sbjct: 56 CVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFAD 115
Query: 228 DNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNP 278
++ + G N + + T D +I + S P
Sbjct: 116 TEGLTFHQGFGA---LQDNHTVLVRESADPNSAVLETLDTEYILLATGSWP 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.429
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,668,623
Number of extensions: 235690
Number of successful extensions: 662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 69
Length of query: 1175
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1080
Effective length of database: 1,103,246
Effective search space: 1191505680
Effective search space used: 1191505680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)