BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6751
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 87/159 (54%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFC 250
CP CGK + L H +TH+ +P+ C CG+ + KK L H H+G P+ C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 251 NKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLAL 310
KSF+Q+ L H H G K Y C CGK F + HQ H+GE+ KC CG +
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 311 TTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ + +L+ H HTG++P++C CGK F+++ VH++
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 274
+P+ C CG+ + L H H+G P+ C C KSF+ K L +H H G K Y+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 275 CHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVC 334
C CGK F + + HQ H+GE+ C CG + + +HL H HTG++P++C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 335 GKRFAKKWNAQVHKK 349
GK F+++ N H++
Sbjct: 140 GKSFSREDNLHTHQR 154
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
++CP CGK + +L H +TH+ +P+ C CG+ + + L H H+G P+ C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 249 FCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGL 308
C KSF+Q L H H G K Y+C CGK F + HQ H+GE+ KC CG
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 309 ALTTKSHLNRHMLVHTGDR 327
+ + + LN H HTG +
Sbjct: 170 SFSRRDALNVHQRTHTGKK 188
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 231 ALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKF 290
+ + + G P+ C C KSF++ L +H H G K Y+C CGK F
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKK 350
HQ H+GE+ KC CG + + +++L H HTG++P+ C CGK F++ + + H ++
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QR 126
Query: 351 VHGLDVPGTTHRVMPVPPIGGG-EKEEDVAVMIKQRLMQKPY 391
H + P P G +E+++ + +KPY
Sbjct: 127 THTGEKP------YKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y C C + F R + H H G+ P +C C K F+ R+ L VH +
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y C C + F + ++ H H G+ P +C C K F+ + L+ H +
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y C C + F R + H H G+ P +C C K F+ + L H +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQR 70
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y C C + F ++ H H G+ P +C C K F+ R L H +
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLRAHQR 98
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
P+ C C KSF+Q L KH H G K Y+C CGK F + + HQ H+GE+ KC
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 304 DICGLALTTKSHLNRHMLVHTGDR 327
CG + + HL+RH H +
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 330
K Y+C CGK F ++ + HQ H+GE+ KC CG + + S L +H HTG++P++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 331 CSVCGKRFAKKWNAQVHKK 349
C CGK F++ + H++
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 185 MPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
M ++CP CGK + S L H +TH+ +P+ C CG+ + L H H+G P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTK 271
+ C C KSF++ L +H H K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 274
+P+ C CG+ + L H H+G P+ C C KSF+Q L KH H G K Y+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 275 CHLCGKGFIHHTSYKFHQLVHSGER 299
C CGK F HQ H ++
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
E+ KC CG + + S+L +H HTG++P++C CGK F++ + Q H++
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHN 56
K Y C C + F + +++ H H G+ P +C C K F+ + L H + N
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQRT-HTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y C C + F + ++ H H G+ P +C C K F+ + L H +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 250 CNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDI--CG 307
C K F + KHL+ H G + + C CGK F+ + K HQLVH+GE+ +C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 308 LALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVH 347
+ +L H+ +HTGDRP+ C C K+FA+ N + H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 186 PLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH 243
P CP C K +R S + H+ TH R VC CG+ + L H +H+G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGER 299
PF C F C K F+ L H+ IH G + Y C C K F T+ K H L H+ +
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Query: 300 N 300
N
Sbjct: 122 N 122
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 186 PLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIH 243
P +H C CGK + S+L H H+ +PF C E CG+ + + L HV +H+G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQ 274
P+ C F CNK F Q L H+ H K Q
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSV--CG 335
C K F +++ + H H G R C CG A S L RH LVHTG++P +C+ CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 336 KRFAKKWNAQVHKKKVHGLDVP 357
KRF+ +N + H ++H D P
Sbjct: 72 KRFSLDFNLRTH-VRIHTGDRP 92
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTF--CEKKFNSRNGLYVHLK 52
+ C C + F ++K H LV H G+ P QCTF C K+F+ L H++
Sbjct: 35 HVCAECGKAFVESSKLKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+ C +CGK F ++ H L+HS R C CG KS + +H +HTG++PH+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 333 VCGKRFAKKWNAQVHKKKVHG 353
VCGK F++ N H +K G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF 249
+C CGK ++ S L+ H+ HSD RP+ C+ CG+ + K + H +H+G P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 250 CNKSFTQKIGLVKHLNIHNG 269
C K+F+Q L+ H H G
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
F C+ICG+ +K L H+ +HS P+ C +C K F QK + KH IH G K ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 277 LCGKGFIHHTSYKFHQLVHSG 297
+CGK F ++ H H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 304
F C C KSF + L HL IH+ T+ Y C CGK F + K H +H+GE+ KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 305 ICGLALTTKSHLNRHMLVHTG 325
+CG A + S+L H HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
+ Y C YC + F + ++K H + H G+ P++C C K F+ + L H +K
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
+ C C + F+R + H+L+ H P C +C K+F+ ++ + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKH 48
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F+QK L H+ IH G K +QC +C + F HT H H+GE+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG T +RH +H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + K L H+ +H+G PF C C ++F+Q GL +H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 273 YQCHLCGKGF 282
+ C +CG+ F
Sbjct: 63 FACDICGRKF 72
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ + L+ HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 337
C + F T+ H +H+G++ +C IC + + LN+H+ HTG++P C +CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 338 FAKKWNAQVHKK 349
FA H K
Sbjct: 72 FATLHTRDRHTK 83
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F + + H+ + H G+ P QC C + F+ GL H++
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIR 55
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVG---MHSGIHPFT 246
ECPTC KK+ + L H + H+ +PF C CG+ Y K+ LL H M+ FT
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 247 CHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQL-VHSG 297
C C ++F +++ L H+ H G Y+C C + F+ + H + +HSG
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQL---VHS 296
SG C C+K F K L H H G K ++C CGK + + H+ ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 297 GERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 356
E+ C +C + L HM+ HTG+ P++CS C ++F +K + Q H K+H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 357 PG 358
G
Sbjct: 123 SG 124
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHN 56
+TC C FRR E++ H +V H G+ P +C+ C ++F + L H+ K+H+
Sbjct: 67 FTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHF-- 249
CG + +L AH+ H+ +PF C E C +G+ L H H+G FTC
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 250 CNKSFTQKIGLVKHLNIHNGTK--KYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC-- 303
C+ FT K + KH N + K Y CH CGK F H K HQ H+ + +C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 304 DICGLALTTKSHLNRHMLVHTG---DRPHECSVCGK 336
+ C + S L RH VH G + CS GK
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 175
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 24/121 (19%)
Query: 245 FTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQC--HLCGKGF--IHHTSYKFHQLVHSGE 298
+ C F C ++ + L HL H G K + C C KGF +HH + H L H+GE
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR--HSLTHTGE 70
Query: 299 RNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSV---------CGKRFAKKWNAQVH 347
+N CD C L TTK+++ +H +R H + CGK F K +VH
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHF-----NRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 348 K 348
+
Sbjct: 126 Q 126
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F+QK L H+ IH G K +QC +C + F S H H+GE+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG T RH +H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + K L H+ +H+G PF C C ++F+Q+ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 273 YQCHLCGKGF 282
+ C +CG+ F
Sbjct: 63 FACDICGRKF 72
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ + L+ HI+ H+ +PF C IC + + + +L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 337
C + F T+ H +H+G++ +C IC + ++ LN H+ HTG++P C +CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 338 FA 339
FA
Sbjct: 72 FA 73
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F + + H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIR 55
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F + + H+ H G+ P C C +KF + + H K
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICGRKFATLHTRTRHTK 83
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
+G K Y C CGK F H + H +H G R C +CG K HL HM +HTG +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 328 PHECSVCGKRFAKKWNAQVHK 348
P+EC++C KRF W H+
Sbjct: 65 PYECNICAKRFM--WRDSFHR 83
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKS 253
CGK + S+ + H+ H LRP+ C +CG+ +KMK L+ H+ +H+GI P+ C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 254 FTQKIGLVKHLNIHNGTKKYQ 274
F + +H+ + TK Y+
Sbjct: 75 FMWRDSFHRHVT--SCTKSYE 93
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 222 CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKG 281
CG+ + K H+ MH G+ P+ C C K F K LV H+ IH G K Y+C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 282 FIHHTSYKFH 291
F+ S+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
SG++ C CG + T KS +RHM +H G RP+ C VCGK+F K + H K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 236
C CGKK++ L H++ H+ ++P+ C IC + + + + HV
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHL 51
+ Y C C + F+ + H+ + H G P +C C K+F R+ + H+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y C C + F + H+ + HLG P C C KKF ++ L H+K
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 39/83 (46%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
P C C K F++K L H+ H G K Y+C C +S H +HS ER KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 304 DICGLALTTKSHLNRHMLVHTGD 326
IC A S L H+ HTGD
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
++C +CGK F K H H+G + KC C A S LN+H+ +H+ +RP +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 333 VCGKRFAKKWNAQV 346
+C +A + ++Q+
Sbjct: 69 IC--PYASRNSSQL 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
H+C CGK + +L H++ H+ ++P+ C+ C +L H+ +HS PF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 249 FCNKSFTQKIGLVKHLNIHNG 269
C + L HL H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEYSER 62
+ C+ C + F R ++K H+ H G P +C C+ + L HL ++H+ E +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFK 66
Query: 63 IEL 65
++
Sbjct: 67 CQI 69
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 274
+ F+C+ CG+ + LL+H H+ P+TC C+K+F ++ L H IH+ K ++
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 275 CHLCGKGFIHHTSYKFHQLVH 295
C CGKGF + H+ +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 330
K++ C CG+ F + H+ H+ ER CDIC A + HL H +H+ ++P +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 331 CSVCGKRFAKKWNAQVHK 348
C CGK F + VHK
Sbjct: 76 CQECGKGFCQSRTLAVHK 93
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFC 250
C CG+ + L H +TH+D RP+ C+IC + ++ + L H +HS PF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 251 NKSFTQKIGLVKHLNIHNGT 270
K F Q L H +H T
Sbjct: 80 GKGFCQSRTLAVHKTLHMQT 99
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 304
F C FC + FT+ L+ H H + Y C +C K F + H+ +HS E+ KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 305 ICGLALTTKSHLNRHMLVH 323
CG L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
+ YTCD C + FRR +++H + H + P +C C K F L VH
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVH 92
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F R E+ H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + +L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F+Q L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F S H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F + G + H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ +EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F R E+ H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ ++L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F R ++ H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 273 YQCHLCGKGFIHHTSYKFHQLVH 295
+ C +CG+ F K H +H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 191 CP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+G PF C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 249 FCNKSFTQKIGLVKHLNIH 267
C + F + +H IH
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 62 FACDICGRKFARSDERKRHTK 82
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F R E+ H+ + H G+ P QC C + F+ + L H++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 82
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVH 295
+ C +CG+ F K H +H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 191 CP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+G PF C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 249 FCNKSFTQKIGLVKHLNIH 267
C + F + +H IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 337
C + F H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 338 FAKKWNAQVHKK 349
FA+ + H K
Sbjct: 72 FARSDERKRHTK 83
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F R E+ H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 215 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F+ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVH 323
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 185 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
M + CP +C +++ S L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIH 267
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F ++ H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F + H+ + H G+ P QC C + F+ + L H++
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K + C C R F R + H+ H G+ P C C +KF + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGER 299
PF C + CNK + + L H H G K YQC C + F K HQ H+G +
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 300 NVKCDICGLALTTKSHLNRHMLVHTGDRPHECS--VCGKRFAK 340
+C C + HL H HTG++P C C K+FA+
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 212 SDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 267
S+ RPF+C C + Y L +H H+G P+ C F C + F++ L +H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD--ICGLALTTKSHLNRHMLVH 323
G K +QC C + F K H H+GE+ C C L RH +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 186 PLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIH 243
P + P C K++ +S L H + H+ +P+ C+ C + + L H H+G+
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFI 283
PF C C + F++ L H H G K + C C K F
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF--CN 251
C +++ +L H + H+ ++PF C+ C + + L H H+G PF+C + C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 252 KSFTQKIGLVKHLNIH 267
K F + LV+H N+H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCG 335
C K + + + H H+GE+ +CD C + L RH HTG +P +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 336 KRFAKKWNAQVH 347
++F++ + + H
Sbjct: 74 RKFSRSDHLKTH 85
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y CD+ C R F R ++K H +H G P QC C++KF+ + L H +
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCE--ICGQGYKMKKALLVHVGMH 239
+C TC +K+ L H +TH+ +PF C C + + L+ H MH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 222 CGQGYKMKKALLVHVGM-HSGIHPFTCHFC--------NKSFTQKIGLVKHLNIHNGTKK 272
C + + L+ HV M H G H C KSF K LV H+ +H G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 273 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDR 327
+ C CGK F + K H+ H+GE+ KC+ C S +HM VHT D+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 155 CDAQLTTETSYSVFYTMLSQSGVLLSERACMPLIHECPTCGKKWRTVSELNAHIQTHSDL 214
CD +T TM G + C ECP GK ++ +L HI+ H+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVC--YWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 215 RPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGT 270
+PF C CG+ + + L +H H+G PF C F C++ F KH+++H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Query: 271 K 271
K
Sbjct: 149 K 149
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 250 CNKSFTQKIGLVKHLNI-HNGTKKYQCHLC--------GKGFIHHTSYKFHQLVHSGERN 300
C+++F+ LV H+ + H G + H+C GK F H VH+GE+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 301 VKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVHKKKVH 352
C CG +L H HTG++P +C C +RFA N+ KK +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA---NSSDRKKHMH 143
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
++Y+C CGK F H + H+ H+GE+ KCD CG A +SHL H VHTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 297
+ C C KSF+ L KH H G K Y+C CGK FI + H VH+G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 299 RNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKK 341
R KCD CG + + S L++H HTG++P++C CGK F ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 213 DLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 270
+ R + C+ CG+ + L H H+G P+ C C K+F Q+ L+ H +H G+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
++C CGK + S+L+ H +TH+ +P+ C+ CG+ + + L+ H +H+G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
++Y CD C + F ++ H H G+ P +C C K F R+ L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI--HPFTCH 248
C CGK +R V LN H +HS +P+ C +CG +K K + HV H G P+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 249 FCNKSFTQKIGLVKHL-NIHNG 269
C K F++ L H+ +H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD- 326
+G+ C +CGK F H+L HSGE+ C +CGL K ++ H+ H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 327 -RPHECSVCGKRFAKKWNAQVHKKKVH 352
+P+ C CGK F++ + H K+VH
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 218 VCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT--KKYQC 275
CEICG+ ++ L H HSG P++C C F +K + H+ H+G+ K Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 276 HLCGKGFIHHTSYKFH-QLVHSG 297
CGKGF H + VHSG
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE- 298
SG C C K F L +H H+G K Y C +CG F +H H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 299 -RNVKCDICGLALTTKSHLNRHM-LVHTG 325
+ C CG + HLN H+ VH+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 189 HECPTCGKKWRTVSELNAHIQTH--SDLRPFVCEICGQGYKMKKALLVHVG-MHSG 241
+ CP CG +++ ++ H+++H S +P++C+ CG+G+ L H+ +HSG
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGK--NPNQCTFCEKKFNSRNGLYVHLKKVHN 56
K Y+C C F+R + HV H G P C C K F+ + L H+K+VH+
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 4 TCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
C+ C ++FR + H L H G+ P C C +F ++ + H++
Sbjct: 9 ACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 188 IHEC--PTCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIH 243
IH C P C K + S L AH++TH+ +P+ C E C + L H H+G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHN 268
PF C CN+SF++ L H+ H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTGDRPHECSVCG 335
C K + + K H H+GE+ KC + C L RH HTG +P +C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 336 KRFAKKWNAQVHKKK 350
+ F++ + +H K+
Sbjct: 83 RSFSRSDHLALHMKR 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 250 CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICG 307
C K +T+ L HL H G K Y+C C F H H+G + +C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 308 LALTTKSHLNRHMLVH 323
+ + HL HM H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHN 56
K Y C + C F R E+ H KH G P QC C + F+ + L +H+K+ N
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHSGIHPFTCHFCN 251
CGK + S L AH++TH+ +P+ C+ G G+K ++ L H H+G PF C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 252 KSFTQKIGLVKHLNIH 267
++F++ L H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCG 335
CGK + + K H H+GE+ CD CG L RH HTG RP +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 336 KRFAKKWNAQVHKKK 350
+ F++ + +H K+
Sbjct: 73 RAFSRSDHLALHMKR 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 250 CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICG 307
C K++T+ L HL H G K Y C CG F H H+G R +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 308 LALTTKSHLNRHMLVH 323
A + HL HM H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
K Y CD+ C F R E+ H KH G P QC C++ F+ + L +H+K+
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHSGIHPFTCHFCN 251
CGK + S L AH++TH+ +P+ C+ G G+K ++ L H H+G PF C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 252 KSFTQKIGLVKHLNIH 267
++F++ L H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 278 CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCG 335
CGK + + K H H+GE+ CD CG L RH HTG RP +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 336 KRFAKKWNAQVHKKK 350
+ F++ + +H K+
Sbjct: 74 RAFSRSDHLALHMKR 88
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 250 CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICG 307
C K++T+ L HL H G K Y C CG F H H+G R +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 308 LALTTKSHLNRHMLVH 323
A + HL HM H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
K Y CD+ C F R E+ H KH G P QC C++ F+ + L +H+K+
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 266 IHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTG 325
I +G Y C +C + ++ TS + H +HS E+ C C + +H + HTG
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 326 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTT--HRVMP 365
+R ++C CGK F H K VH D G + +R+ P
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHP 117
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
++C +C + Y +L H +HS + C +C K F KH H G ++YQC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 277 LCGKGFIHHTSYKFH-QLVHSGE 298
CGK FI++ H + VHS +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQD 105
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 1 KKYTCDYCTRLFRRP-GEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEY 59
KKY C YC ++F P E + + H G+ QC C K F + + H+K VH+ +
Sbjct: 49 KKYPCRYCEKVF--PLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Query: 60 SERIELVSNIPLDE-DITDAALLVDKA 85
S +L P I A L D++
Sbjct: 107 SGDSKLYRLHPCRSLQIRQYAYLSDRS 133
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFC 250
C C + + ++ L H HS + + C C + + + + H H+G + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 251 NKSFTQKIGLVKHL-NIHN-----GTKKYQCHLCGKGFIHHTSY 288
KSF + H+ ++H+ +K Y+ H C I +Y
Sbjct: 85 GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAY 128
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 194 CGKKWRTVSELNAHIQT---HSDLRPFVCEICG-----QGYKMKKALLVHVGMHSGIHPF 245
C +++ + +L HI + H + + FVC G + +K + L+VH+ H+G P
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 246 TCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQ-LVHSGERN 300
C F C KS+++ L HL H G K Y C C K F + + HQ HS E+
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 301 VKCDI--CGLALTTKSHLNRHM 320
C + C T S L +H+
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHV 150
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 250 CNKSFTQKIGLVKHLN---IHNGTKKYQCHLCG-----KGFIHHTSYKFHQLVHSGERNV 301
C++ F + LV H+N IH K++ CH G + F H H+GE+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 302 KCDI--CGLALTTKSHLNRHMLVHTGDRPHEC--SVCGKRFAKKWNAQVHKKKVHGLDVP 357
KC C + + +L H+ HTG++P+ C C K F+ + H+ + H + P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
P+ C C SF K L H +H G K Y+C++CG F + K H +HSGE+
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
K Y+C C F + + H+ VH+GE+ +C+ICG ++L H +H+G++P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 357
++ KCD C + K +L H VHTG++P+ C++CG +F + N + H ++H + P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEKP 73
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
+P+ C+ C ++ K L H +H+G P+ C+ C F + L H IH+G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
++C C +R L +H H+ +P+ C ICG + L H +HSG P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVE 58
K Y CD C FR G + +H V H G+ P +C C +FN L H ++H+ E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTHT-RIHSGE 71
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 267
+P+ C CG+ + L+ H +H+G P+ C C K+F+Q GL+ H IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS 296
P+ C C K+F++ LV+H +H G K Y+C CGK F ++ HQ +H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHT 324
K Y C CGK F + HQ VH+GE+ KC CG A + S L H +HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
E+ C CG A + S L +H VHTG++P++C CGK F++ H++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHS 240
C CGK + S L H + H+ +P+ C CG+ + L+ H +H+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y C C + F R + H V H G+ P +C C K F+ +GL H +++H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 356
+C IC + HL H+ HTG++P C +CG++FA+ + H+ H L +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNI 266
++PF C IC + + L H+ H+G PF C C + F + +H +I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQ 292
PF C C ++F++ L H+ H G K + C +CG+ F K H+
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGY 226
+C C + + L HI+TH+ +PF C+ICG+ +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRH 319
K +QC +C + F H H+GE+ CDICG RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKF 41
K + C C R F R + H+ H G+ P C C +KF
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKF 41
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 245 FTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQC--HLCGKGF--IHHTSYKFHQLVHSGE 298
+ C F C ++ + L HL+ H G K + C C KGF +HH + H L H+GE
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTR--HSLTHTGE 61
Query: 299 RNVKCDI--CGLALTTKSHLNRHM 320
+N CD C L TTK+++ +H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHF-- 249
CG + +L AH+ H+ +PF C E C +G+ L H H+G FTC
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 250 CNKSFTQKIGLVKHLN-IHN 268
C+ FT K + KH N HN
Sbjct: 71 CDLRFTTKANMKKHFNRFHN 90
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTGD 326
K+Y C CG + + + H H+GE+ C + C T+ HL RH L HTG+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 327 RPHECSV--CGKRFAKKWNAQVHKKKVHGL 354
+ C C RF K N + H + H +
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN-IHNGT 270
FVCE+C + + ++ L H H+ P+ C CN++FT++ L++H IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 303 CDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 356
C++C A + HL RH HT ++P+ C +C + F ++ H +K+H ++
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEYSE 61
+ C+ CTR F R +K H H + P C C + F R+ L H +K+H+ E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH-QLVHSG 297
F C C ++F ++ L +H H K Y C LC + F H Q +HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV-GMHSG 241
C C + + L H ++H++ +P+ C +C + + + L+ H +HSG
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHML-VHTGD 326
+ C +C + F K H H+ E+ C +C A T + L RH +H+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 239
EC CGK +R+ LN H++TH+ +P+ CE C K +L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 297 GERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
G + +C CG + +LN H+ HTG++P++C C A+K + + H ++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 219 CEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHN 268
C CG+ ++ L +H+ H+G P+ C FC + QK L HL H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 269 GTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 323
G+ +C CGK F + H H+GE+ KC+ C A K+ L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 5 CDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
C YC + FR + H L H G+ P +C FCE + L HL++ H
Sbjct: 7 CSYCGKFFRSNYYLNIH-LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 247 CHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
C +C K F L HL H G K Y+C C TS ++H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 267
RPF C CG+ Y+ L H H G P +C C K F + + +HL +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVH 295
PF C+FC K++ GL +H H G + C CGK F + H VH
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
ER C+ CG S L+RH H G RP C CGK F + H K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 323
+ + C+ CGK + + H+ H G R C CG +S +NRH+ VH
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 239
C CGK +R S L+ H + H RP C CG+ ++ + + H+ +H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSD 213
CP CGK +R SE+N H++ H +
Sbjct: 35 CPECGKCFRDQSEVNRHLKVHQN 57
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ + C++C + +R + H HLG P C C K F ++ + HLK
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLK 53
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
++CE CG K L H+ H+ + P+ C +CN SF K L KH+ +KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 236
C CG + + S L HI+TH+D+RP+ C C +K K L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 303 CDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVH-KKKVHG 353
C+ CG+ S L +H+ HT RP+ C+ C F K N H K K H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 2 KYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
KY C+ C ++P +K H+ H P CT+C F ++ L H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 272 KYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHM 320
KY C CG + K H H+ R C C + TK +L +HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 214 LRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 267
+RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 189 HECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHS 240
+ CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 242 IHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGF 282
+ P+ C C++ F++ L +H+ IH G K +QC +C + F
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTC--DYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
+ Y C + C R F R E+ H+ + H G+ P QC C + F+ + L H++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 306 CGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
C + L RH+ +HTG +P +C +C + F++ + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHT 324
+ Y C + C + F H +H+G++ +C IC + HL H+ HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KCDICG + +S LNRH +VHT ++P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C +CGK F + H +VH+ E+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHT---GDRPHECSVCGKRFAKKWNAQVHKKKVH 352
SG ++C+ICG K+ LN H H C CGKRF K + H+ K H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSD----LRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+C CG R + LN H + H++ LR F CE CG+ ++ ++ H S HP
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAH---RSKSHP 63
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KCD+CG + SHL H VHTG++P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C +CGK F + + HQ VH+GE+
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ C+ CG + KSHLNRH +HTG++P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C KSF QK L +H IH G K
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC +CG A SHL +H VH+G+RP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C++CG+ +++ L+ H +HSG P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C +CGK F + H VHSGER
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+F LV+H ++H+G +
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T SHL RH +HTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K FTQ L +H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T SHL RH VHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K FTQ L +H +H G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C ICG + T KS L+ H +HTG++P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 326 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 357
++P+ECS+CGK F KK VH +++H + P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C +CGK F + HQ +H+GE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C KSFT+K L H IH G K
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C ICG+ + K L VH +H+G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRP 328
+C CG T KSHLN+H +HTG++P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC CG SHL RH L+HTG++P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+CH CGK F ++ HQL+H+GE+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ CH C K F + L +H IH G K
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEK 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C +C K F HH S HQ VHSGE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +CD+C A + + L +H VH+G++P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+F+ L +H +H+G K
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T SHL RH +HTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K FTQ LV+H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C +C A T K+HL +H HTG++P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C+K+FTQK L +H H G K
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 330
+ V C+ICG HLNRH L H+G++P+
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPF 217
C CGK +R V LN H +HS +P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG A + S L RH +HTG++P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K+F+Q L +H IH G K
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C+ CGK F + HQ +H+GE+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T SHL H +HTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K FTQ L H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
S +P+ C CG+ + K L+VH G+H+G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
SGE+ C+ CG A T KS L H VHTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
SG P++C+ C K+FT K L+ H +H G K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSGI 242
S +P+VC CG+ + K L+VH G+H+G+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTG 325
SGE+ C CG A T KS L H +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
SG P+ C C K+FT K L+ H IH G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y C CGK FIH + + HQ +H+GE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ C+ CG A S L H +HTG++P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C+ CG T SHL+ H VHTG++P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K +QC CGK F ++ HQ VH+GE+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C K FTQ L H +H G K
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRP 328
KC+ CG T SHL RH +HTG++P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K FTQ L +H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C +CGK F H S HQ +HSG++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C +CG+ + +++L VH +HSG P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 326 DRPHECSVCGKRFAKKWNAQVHKK 349
++P+ECSVCGK F+ + + VH++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR 33
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C +CG A + + L+ H +H+G +P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+F+ + L H IH+G K
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
ER C +CG A T +S+L +H +HTG++P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+FT + L+KH IH G K
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
RP++C +CG+ + + L+ H +H+G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ Y C +CGK F ++ HQ +H+GE+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 273 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTG--- 325
Y CH CGK F H K HQ H+ + +C + C + S L RH VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 326 DRPHECSVCGKRFA 339
+ CS GK +
Sbjct: 62 KKDDSCSFVGKTWT 75
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 217 FVC--EICGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG 269
+VC E CG+ +K L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 273 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTG--- 325
Y CH CGK F H K HQ H+ + +C + C + S L RH VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 326 DRPHECSVCGKRFA 339
+ CS GK +
Sbjct: 62 KKDDSCSFVGKTWT 75
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 217 FVC--EICGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG 269
+VC E CG+ +K L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ E+ +CD C + +S LN H ++HTG++P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C+KSF Q+ L H IH G K
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C C K F ++ H+++H+GE+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+PF C+ C + ++ + AL H +H+G P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC CG A +HLN H +HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGK F HT H+ +H+G R
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C+ CGK F H++ HQ++H+GE+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG A S+L H ++HTG++P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 218 VCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN 265
+C +CG+ + K A H+ + F C +C +F GL +H+N
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T S L+ H VHTG++P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C K FTQ L H +H G K
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C CGK F ++ HQ VH+GE+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG +K +L+ H VHTG+RP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGKG+ + HQ VH+GER
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ CE CG+GY K L +H +H+G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 192 PTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
P CGK + L H++ HSD R ++CE G
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 192 PTCGKKWRTVSELNAHIQ-THSDLRPFVCE--ICGQGYKMKKALLVHVGMHSGIHPFTCH 248
P CG+ + LN H + H + F C CG+ + KK L H+ +HS + C
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
Query: 249 FCNKS 253
F S
Sbjct: 73 FSGPS 77
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG + S L++H +HTG++P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K+Y+C+ CGK F ++ HQ +H+GE+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG S+L+RH +HTG++P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C+ CGK F H++ HQ +H+GE+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C CG A K++L +H +HTG++P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+F QK L +H IH G K
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGK F + HQ +H+GE+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 326 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 357
++P+ C CGK FA+K N H +++H + P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH-QRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C K+F Q I L HL IH G K
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC CG A HL H+ +HTG++P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E KC+ CG + +HL++H L+H G+ P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 268 NGTKK--YQCHLCGKGFIHHTSYKFHQLVHSGER 299
+GTK+ ++C+ CGK F H HQL+H+GE
Sbjct: 6 SGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGEN 39
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIHNG 269
HPF C+ C K+F+ L KH IH G
Sbjct: 11 HPFKCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T SHL H +HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K FTQ L H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG +HL H+L+HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC CG + + HL +H VHTG++P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C KS+ Q++ L +H +H G K
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 303 CDICGLALTTKSHLNRHM-LVHTGDRPHECSV 333
C CG + HLN H+ VHT +RPH+C V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQC 34
K Y C C + F RP + H+ H + P++C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CPTCGKKWRTVSELNAHI-QTHSDLRPFVCEI 221
C +CGK + LN HI Q H+ RP C++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRP 328
+C+ CG A + S L RH VHTG++P
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K YQC+ CGK F + HQ VH+GE+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K+F+Q L +H +H G K
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y C+ CGK F ++S HQ++H+GE+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 303 CDICGLALTTKSHLNRHMLVHTGDRP 328
C+ CG A + S L H ++HTG++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C CG A + +HL +H VHTG++P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+F+Q L++H +H G K
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGK F T HQ VH+GE+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
K Y+C CGK FI ++ HQ HSGE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 324 TGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGT 359
T ++P+ECS CGK F + VH++ G P +
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSS 43
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
ER KC+ CG + +HL +H +HTG++P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P C+ C KSF Q L++H IH G K
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ C CG A ++KS+L HM H+G++P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C CG+ + K L++H+ HSG P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+F+ K L+ H+ H+G K
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 306 CGLALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVHKK 349
CG SHL H HTG++P CS C +RFA+ H++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 212 SDLRPFVCE--ICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 267
S +R +C CG+ Y L H H+G PF+C + C + F + L +H H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 192 PTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
P CGK + S L AH +TH+ +PF C G
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG 54
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C+ CG A + +S L H +HTG +P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C+ CGK F +S HQ +H+G++
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C CG+ + ++ +L H +H+G P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K+F+ + L H IH G K
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ CD CG A + L RH +HTG++P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C +C K+F LV+H IH G K
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+VC+ CG+ + + L+ H +H+G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C+ CGK F +S HQ HSGE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C CG+ ++ + +L +H HSG P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG A +S L H H+G++P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
SG + C CG A +KS+L HM HTG++P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
SG+ P+ C C K+F K L+ H+ H G K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
S ++P+ C CG+ ++ K L++H+ H+G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C+ CG+ + K +L+VH+ +H+G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGT 270
P+ C C K+F+QK L+ H+ +H G+
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +CD CG A + K L H+ VHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C CG A T +S+L H +HTG++P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGK F ++ HQ +H+GE+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+FT + L H IH G K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
ER+ +C CG A KS L H +HTG++P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ Y+C CGK F ++ HQ +H+GE+
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGKG+ FHQ VH+GE+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 299 RNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
++ +C CG A T KS L+ H +HTG++P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C CGK F ++ HQ +H+GE+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 209 QTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH----PFTCHFCNKSFTQKIGLVKHL 264
+TH+ +P+ C C + ++ K+ L +H + + F C C K+FT++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 265 N 265
+
Sbjct: 68 D 68
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 322 VHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
HTG++P+ CS C K F +K +H K+ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEY 59
H G+ P C+ C+K F + L +H K+ H+ +
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 43
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK----KYQCHLCGKGFIHHTSYKFHQLV 294
H+G P+ C C+K+F QK L H ++ + C CGK F + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 295 HSGERNVKCDICG 307
+G V+ + G
Sbjct: 70 CAGPDGVEGENSG 82
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHT 324
E+ C++CG A +HLN+H+ VHT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
E+ KC CG A T+S+L H ++HTG++
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C+ CGK F ++ HQ++H+GE+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
P+ C+ C K+F + L H IH G K+
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ Y+C CGK FI ++ HQ +H GE+
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
ER+ +C CG A KS L+ H +H G++P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ CH C K+F++K L+ H H G K
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGER 299
Y+CH CGK F HQ H+GE+
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C K+F+ IGL +H IH G K
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ C CG A + LN+H +HTG++P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSG 241
++P+VC CG+ ++ K L++H H+G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 270
SG PF C C +FT K +HL +H T
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHT 324
SG+R C IC A TTK++ RH+ VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
S +P+VC CG+ + +K L++H +H+G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
+G K Y C+ CGK F + H+ +H+GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
SG P+ C+ C K+F K L+ H IH G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPN-QCTFCEKKFNSRNGLYVHLKKVHN 56
K Y C C F + G +K H+L KH C C+ ++ L VHL+K H+
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 322 VHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 356
H+G++P+EC +C RF + ++H + H +V
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 294 VHSGERNVKCDICGLALTTKSHLNRHMLV-HTGD-RPHECSVCGKRFAKKWNAQVHKKKV 351
HSGE+ +C IC T + H+L HT + C C A+K + VH +K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 352 HGLDVPGT 359
H P +
Sbjct: 69 HSYSGPSS 76
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGKGFI H +VH+GE+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG + L H +VHTG++P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ CE CG+G+ ++ L H +H+G P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 270
SG P+ C C KSF+Q+ L H +H G+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 297
+G K YQC CGK F S H+ +H+G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
S +P+ C+ CG+ + + +L VH +H+G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 324 TGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P++C CGK F+++ + VH++
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER 31
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
SGE+ +C CG + + + L H +HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 292 QLVHSGERNVKCDICGLALTTKSHLNRHMLVH--TGDRPHECSVCGKRFAKKWNAQVHKK 349
+ GE +C +C T S+ RH + + + C C K F +K N H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 350 KVHGL 354
+H +
Sbjct: 62 IIHKI 66
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKH-LGKNPNQCTFCEKKFNSRNGLYVHLKKVHNV 57
Y C C+R++ H + H C FC K+F ++ + H+K +H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
E+ KC CG A T KS L+ H HTG+R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
K Y+C CGK F + HQ H+GER+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+FT+K GL H H G +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
SG P C+ C K+F Q L KH IH+G K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
SG++ + C+ CG S L++H +H+G++P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+G K C+ CGK F + HQ +HSGE+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
SGE+ C+ CG ++KS+L H +HTG++
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
SG P+ C+ C K F+ K L+ H IH G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+G K Y C+ CGK F + HQ +H+GE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
K Y+C CGK FI + HQ +H+GE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C CG + KS L+ H +HTG+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 326 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTT 360
++P+ECS CGK F KK VH++ G + G +
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C KSF K LV H IH G K
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSG 241
+PF C CG+ ++ K L+ H +H+G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+PF C CG+G+ + AL VH +H+G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC CG + +S LN H +HTG++P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C CGKGF ++ H +H+GE+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGKG+ + HQ VH GE+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSG 241
+P+ CE CG+GY + L +H +H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 327 RPHECSVCGKRFAKKWNAQVHKK 349
RP+ CSVCGKRF+ K + H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSG 241
+RP+ C +CG+ + +K + H +H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ C CGK F H T+ HQ +H+GER
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 243 HPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
+PF C C K FT K L+ H IH G +
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 216 PFVCEICGQGYKMKKALLVHVGMHSGIHP 244
PF+C CG+ + K L++H +H+G P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E C CG T K++L H +HTG+RP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+G K Y C CGK F + H+ VH+GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
SG P+ C C K+FTQ L H +H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
SGE+ C CG A T S L+ H VHTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
S +P+VC+ CG+ + L +H +H+G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KCD+C + S L H +HTG++P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C +C K F + +S HQ +H+GE+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
E+ KC CG + T KS L H HTG+R
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
K Y+C CGK F + + HQ H+GER+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+G K Y C CGK FI + + H+ +H+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
SGE+ C CG A KSH H +HTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
SG P+ C C K+F +K + H IH G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ C+ CG + KS L+ H HTG++P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C+ C K+F+QK L H H G K
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y C+ CGK F + HQ H+GE+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 301 VKCDICGLALTTKSHLNRHMLVHTGDR 327
+KC CG TT +L RH+ +H+G++
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P C C K FT L +HL IH+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
RP+ C CG+ +K K +L+ H H+G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+R +C CG A TKS L H HTG++P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y+C CGK F ++S HQ +H+G+R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC CG A S +H +HTG RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
+G K ++C+ CGK F + HQ +H+GE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
SGE+ +C+ CG A + KS L H +HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C C A TKS+L H HTG++P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+PF C C + + K L+VH H+G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C K+F K L+ H H G K
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 324 TGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 357
+G++P+EC+ CGK F K +H++ G P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
SGE+ +C CG A KS L H HTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+G K Y+C CGK F + HQ H+GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
S +P+ C CG+ + +K L++H H+G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
++P+ C C + + +K L+VH H+G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ KC+ CG T S H H+G++P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C CGKGF ++ HQ HSGE+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+PF CE CG+G+ H HSG P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
SG+R +C CG + K L H +HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 270
SG + C C KSF QK L H IH G+
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 297
+G + Y+C CGK F S H+ +H+G
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
S R + C+ CG+ ++ K +L +H +H+G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P C C K+FTQ L+ H+ H G K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 242 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
+ P+ C +C +SF+ ++HL H+ K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 189 HECPTCGKKWRTVSELNAHIQTH 211
H+CP C KK+ V L AH++ H
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLKIH 25
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ CEICG ++ + L H+ +H+G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 324 TGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGT 359
+G+ P+ECS CGK F +K H++ G P +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 240 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
SG +P+ C C K+F +K L+ H H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
+G Y+C CGK F HQ H+GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHS 240
RPF C CG+G+ + L H+ +HS
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHT 324
ER KC+ CG +SHL H+ +H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C KSF L+KH +H+G K
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 244
+P+ C+ CG+ ++ LL H +HSG P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y C CGK F + HQ VHSGE+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 286 TSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
+ + H+ +H +R KC+ C S+L++HM GD
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 313 KSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTT 360
K+ L H +H DRP +C+ C + N H KK HG D+ G +
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG-DMSGPS 68
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 229 KKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
K AL +H +H PF C++C+ Q L KH+ +G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTK 271
FTC +CNK F K L HL IH K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTK 271
F C+ C K+FTQ L H IH G K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C+ C K F +S HQ +H+GE+
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRP 328
KC+ C T S L H +HTG++P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
K +QC CG+ F + S HQ++H G++N
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P+ C C K+FT + L+KH IH K
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ C CG A T +S+L +H +HT +P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K + C CGK F + ++ + HQ VH GE+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 298 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
E+ +C CG + + S L H +HTG++P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K ++C CGK F + HQ +H+GE+
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
PF C C KSF+ L H IH G K
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
SGE+ C C A ++KS+L H H ++P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 326 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGT 359
++P+EC+ C K F K N VH++ G P +
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 33 QCTFCEKKFNSRNGLYVHLKKVHNVE 58
QC +CEK+F + L H+K H+ E
Sbjct: 4 QCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGI 242
+P+ C CG+ + K L+VH H+G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 242 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
++P+ C C KSF+ K+ L+ H +H K
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,767,253
Number of Sequences: 62578
Number of extensions: 463365
Number of successful extensions: 2332
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 1081
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)