RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6751
(392 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 137 bits (348), Expect = 4e-39
Identities = 59/161 (36%), Positives = 88/161 (54%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
+ CP CGK + L H +TH+ +P+ C CG+ + KK L H H+G P+ C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 249 FCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGL 308
C KSF+Q+ L H H G K Y C CGK F + HQ H+GE+ KC CG
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 309 ALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ + + +L+ H HTG++P++C CGK F+++ VH++
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 128 bits (325), Expect = 7e-36
Identities = 50/148 (33%), Positives = 75/148 (50%)
Query: 202 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLV 261
S A +P+ C CG+ + L H H+G P+ C C KSF+ K L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHML 321
+H H G K Y+C CGK F + + HQ H+GE+ C CG + + +HL H
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 322 VHTGDRPHECSVCGKRFAKKWNAQVHKK 349
HTG++P++C CGK F+++ N H++
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 119 bits (301), Expect = 2e-32
Identities = 50/140 (35%), Positives = 72/140 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
++CP CGK + +L H +TH+ +P+ C CG+ + + L H H+G P+ C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 249 FCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGL 308
C KSF+Q L H H G K Y+C CGK F + HQ H+GE+ KC CG
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 309 ALTTKSHLNRHMLVHTGDRP 328
+ + + LN H HTG +
Sbjct: 170 SFSRRDALNVHQRTHTGKKT 189
Score = 114 bits (288), Expect = 2e-30
Identities = 39/121 (32%), Positives = 63/121 (52%)
Query: 229 KKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSY 288
+ + + G P+ C C KSF++ L +H H G K Y+C CGK F
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 289 KFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
HQ H+GE+ KC CG + + +++L H HTG++P+ C CGK F++ + + H+
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Query: 349 K 349
+
Sbjct: 126 R 126
Score = 97.1 bits (243), Expect = 4e-24
Identities = 34/97 (35%), Positives = 49/97 (50%)
Query: 253 SFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTT 312
S V + G K Y C CGK F HQ H+GE+ KC CG + +
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 313 KSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
K L RH HTG++P++C CGK F+++ N + H++
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR 98
Score = 44.4 bits (106), Expect = 1e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 308 LALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
++ S + G++P+ C CGK F++ + H+
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ 41
Score = 27.8 bits (63), Expect = 4.2
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K Y C C + F R + H H G+ P +C C K F+ + L H
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRH 68
Score = 27.0 bits (61), Expect = 7.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y C C + F + ++ H H G+ P +C C K F+ + L+ H ++ H
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTH-QRTH 156
Score = 27.0 bits (61), Expect = 7.9
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K Y C C + F + ++ H H G+ P C C K F+ L H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAH 124
Score = 27.0 bits (61), Expect = 8.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K Y C C + F ++ H H G+ P +C C K F+ R L H
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLRAH 96
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 118 bits (299), Expect = 4e-32
Identities = 53/176 (30%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCE--ICGQGYKMKKALLVHVGMHSGIHPFTC 247
CG + +L AH+ H+ +PF C+ C +G+ L H H+G FTC
Sbjct: 16 SFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Query: 248 --HFCNKSFTQKIGLVKHLNIHNGTKK--YQCHL--CGKGFIHHTSYKFHQLVHSGERNV 301
C+ FT K + KH N + K Y CH CGK F H K HQ H+ +
Sbjct: 76 DSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY 135
Query: 302 KC--DICGLALTTKSHLNRHMLVHTGD---RPHECSVCGKRFAKKWNAQVHKKKVH 352
+C + C + S L RH VH G + CS GK + H + H
Sbjct: 136 ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT---LYLKHVAECH 188
Score = 91.5 bits (228), Expect = 5e-22
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 11/146 (7%)
Query: 190 EC--PTCGKKWRTVSELNAHIQTHSDLRPFVCE--ICGQGYKMKKALLVHVGMHSG--IH 243
C C K + ++ L H TH+ + F C+ C + K + H I
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCH--LCGKGFIHHTSYKFHQLVHSGER 299
+ CHF C K+F + L H H Y+C C K F + K H+ VH+G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163
Query: 300 NVKCDICGLALTTKSHLNRHML-VHT 324
K D C T + +H+ H
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 84.6 bits (210), Expect = 2e-19
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 261 VKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCD--ICGLALTTKSHL 316
+ + K+Y C CG + + + H H+GE+ C C T+ HL
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 317 NRHMLVHTGDRPHECS--VCGKRFAKKWNAQVHKK 349
RH L HTG++ C C RF K N + H
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Score = 38.3 bits (90), Expect = 0.001
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 319 HMLVHTGDRPHECSV--CGKRFAKKWNAQVHKKK 350
+ + + CS CG + K W Q H K
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK 36
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 114 bits (287), Expect = 3e-31
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQ---LVH 295
SG C C+K F K L H H G K ++C CGK + + H+ ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
E+ C +C + L HM+ HTG+ P++CS C ++F +K + Q H K+H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 97.2 bits (243), Expect = 8e-25
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKH---LNIHNGTK 271
C C + + K L VH H+G PF C C K + +K L++H ++ +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 272 KYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHML-VHTG 325
+ C +C + F + H + H+GE KC C K L HM+ +H+G
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 93.3 bits (233), Expect = 2e-23
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVH---VGMHSGIHPFT 246
ECPTC KK+ + L H + H+ +PF C CG+ Y K+ LL H M+ FT
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 247 CHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQL-VHSGER 299
C C ++F +++ L H+ H G Y+C C + F+ + H + +HSG
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 36.3 bits (85), Expect = 0.003
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVH-VGMHSG 241
C C + +R EL H+ +H+ P+ C C Q + KK L H + +HSG
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 33.2 bits (77), Expect = 0.034
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ +TC C FRR E++ H +V H G+ P +C+ C ++F + L H+ K+H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.2 bits (69), Expect = 0.42
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNH--VLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K + C C + + R + H + + C+ C++ F R L +H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 28.2 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
C C + F +K H H G+ P +C C K + + L H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEH 54
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 103 bits (260), Expect = 2e-27
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
SG + C C KSFT K +H+++H G + Y C +CGK F H +H+G
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 299 RNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKK 341
+ +C+IC + +RH V + + +E + + +
Sbjct: 64 KPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEA 104
Score = 92.5 bits (231), Expect = 3e-23
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
S + + C+ CG+ + K H+ MH G+ P+ C C K F K LV H+ IH G
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 270 TKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLN 317
K Y+C++C K F+ S FH+ V S ++ + T S +
Sbjct: 63 IKPYECNICAKRFMWRDS--FHRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 85.6 bits (213), Expect = 8e-21
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 266 IHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTG 325
+G K Y C CGK F H + H +H G R C +CG K HL HM +HTG
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 326 DRPHECSVCGKRFAKK 341
+P+EC++C KRF +
Sbjct: 63 IKPYECNICAKRFMWR 78
Score = 76.3 bits (189), Expect = 2e-17
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF 249
C CGK + S+ + H+ H LRP+ C +CG+ +KMK L+ H+ +H+GI P+ C+
Sbjct: 12 PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 250 CNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTS 287
C K F + H ++ + TK Y+ + +
Sbjct: 71 CAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 27.4 bits (62), Expect = 3.7
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 30/72 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
+EC C K++ + H+ S +
Sbjct: 66 YECNICAKRFMWRDSFHRHV------------------------------TSCTKSYEAA 95
Query: 249 FCNKSFTQKIGL 260
++ T+ G
Sbjct: 96 KAEQNTTEASGP 107
Score = 26.6 bits (60), Expect = 6.2
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y C C + F + H+ + HLG P C C KKF ++ L H K+H
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 101 bits (255), Expect = 7e-27
Identities = 33/95 (34%), Positives = 40/95 (42%)
Query: 237 GMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS 296
G P C C K F++K L H+ H G K Y+C C +S H +HS
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 297 GERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
ER KC IC A S L H+ HTGD
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 85.6 bits (213), Expect = 6e-21
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
+ ++C +CGK F K H H+G + KC C A S LN+H+ +H+ +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 327 RPHECSVCGKRFAKKWNAQVHKK 349
RP +C +C VH +
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR 85
Score = 79.8 bits (198), Expect = 9e-19
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
+ P CE+CG+ + K L H+ H+G+ P+ C C+ + L KHL IH+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 270 TKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ ++C +C + + H H+G+
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 68.6 bits (169), Expect = 7e-15
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
H+C CGK + +L H++ H+ ++P+ C+ C +L H+ +HS PF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 249 FCNKSFTQKIGLVKHLNIHNGTKKYQC 275
C + L HL H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 28.2 bits (64), Expect = 1.6
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y C C + H L H + P +C C + + L VH + H
Sbjct: 35 KPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVH-LRSH 87
Score = 27.4 bits (62), Expect = 2.8
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ C+ C + F R ++K H+ H G P +C C+ + L H ++H
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKH-LRIH 59
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 102 bits (257), Expect = 1e-26
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 13/152 (8%)
Query: 194 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF---- 249
G + + + + + C + + L+ HV M P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 250 -----CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVK 302
KSF K LV H+ +H G K + C CGK F + K H+ H+GE+ K
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 303 CDI--CGLALTTKSHLNRHMLVHTGDRPHECS 332
C+ C S +HM VHT D+ S
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 99.7 bits (249), Expect = 2e-25
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 14/144 (9%)
Query: 222 CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ------- 274
G + K L + C+++F+ LV H+ + + Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 275 --CHLCGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHE 330
C GK F H VH+GE+ C CG +L H HTG++P +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 331 CSV--CGKRFAKKWNAQVHKKKVH 352
C C +RFA + + H VH
Sbjct: 123 CEFEGCDRRFANSSDRKKH-MHVH 145
Score = 66.9 bits (164), Expect = 2e-13
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFT 246
ECP GK ++ +L HI+ H+ +PF C CG+ + + L +H H+G PF
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 247 CHF--CNKSFTQKIGLVKHLNIHNGTKKYQC 275
C F C++ F KH+++H K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 38.0 bits (89), Expect = 0.002
Identities = 5/48 (10%), Positives = 9/48 (18%)
Query: 306 CGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
G + + C + F+ H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV 50
Score = 34.6 bits (80), Expect = 0.020
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGK--------NPNQCTFCEKKFNSRNGLYVHLK 52
C R F E+ HV ++H+G +C K F ++ L H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-I 82
Query: 53 KVH 55
+VH
Sbjct: 83 RVH 85
Score = 28.8 bits (65), Expect = 1.6
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTF--CEKKFNSRNGLYVHL 51
C + F+ ++ NH+ V H G+ P C F C K F L +H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIHK 112
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 100 bits (252), Expect = 2e-26
Identities = 25/101 (24%), Positives = 36/101 (35%)
Query: 232 LLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
F C FC + FT+ L+ H H + Y C +C K F + H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 292 QLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+ +HS E+ KC CG L H +H +
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 92.1 bits (230), Expect = 4e-23
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 259 GLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNR 318
G K++ C CG+ F + H+ H+ ER CDIC A + HL
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
H +H+ ++P +C CGK F + VHK
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 84.4 bits (210), Expect = 2e-20
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 202 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLV 261
S + + F+C+ CG+ + LL+H H+ P+TC C+K+F ++ L
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
H IH+ K ++C CGKGF + H+ +H +
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 69.8 bits (172), Expect = 4e-15
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
C CG+ + L H +TH+D RP+ C+IC + ++ + L H +HS PF C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 249 FCNKSFTQKIGLVKHLNIHNGTKKYQC 275
C K F Q L H +H T
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 45.9 bits (110), Expect = 1e-06
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 313 KSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
S + L + C CG+ F K +N +H++
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER 38
Score = 28.2 bits (64), Expect = 1.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ YTCD C + FRR +++H + H + P +C C K F L VH K +H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVH-KTLH 96
Score = 26.6 bits (60), Expect = 4.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K++ C +C R F + + H H + P C C K F ++ L H + +H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDH-RYIH 68
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 101 bits (255), Expect = 3e-26
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 33/174 (18%)
Query: 190 ECPTCGKKWRTVSELNAHIQT---HSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
C +++ + +L HI + H + + FVC G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------------------- 41
Query: 247 CHFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC- 303
C + F + LV H+ H G K ++C C K + + K H H+GE+ C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 304 -DICGLALTTKSHLNRHML-VHTGDRPHECSV--CGKRFAKKWNAQVHKKKVHG 353
+ C A + S +H H+ ++P+ C + C KR+ + + H K VHG
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 91.5 bits (228), Expect = 3e-22
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLN---IHNGTKKYQCHLCG-----KGFIHHTSYKFHQLVH 295
C++ F + LV H+N IH K++ CH G + F H H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 296 SGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHEC--SVCGKRFAKKWNAQVHKKKV 351
+GE+ KC C + + +L H+ HTG++P+ C C K F+ + H+ +
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 352 H 352
H
Sbjct: 123 H 123
Score = 67.2 bits (165), Expect = 1e-13
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 271 KKYQCHLCGKGFIHHTSYKFH---QLVHSGERNVKCDICGLALTTK-----SHLNRHMLV 322
+ C + F H + +H + C G + + L HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 323 HTGDRPHECSV--CGKRFAKKWNAQVHK 348
HTG++PH+C+ C K +++ N + H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 44.1 bits (105), Expect = 1e-05
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 298 ERNVKCDICGLALTTKSHLNRHML---VHTGDRPHECSVCG-----KRFAKKWNAQVHK 348
E + + D C ++ L H+ +H + C G + F ++ VH
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 33.3 bits (77), Expect = 0.047
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHL--GKNPNQCTFCE-----KKFNSRNGLYVHLKK 53
D C++ F ++ +H+ +H+ + C + + F ++ L VH +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH-MR 60
Query: 54 VH 55
H
Sbjct: 61 RH 62
Score = 29.5 bits (67), Expect = 1.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTF--CEKKFNSRNGLYVHLKKVH 55
K Y C++ C++ F + H H + P C C K++ + L H K
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH-VKTV 153
Score = 29.1 bits (66), Expect = 1.5
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTF--CEKKFNSRNGLYVHLKKVHN 56
K + C + C + + R +K H+ H G+ P C C K F++ + H + H+
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 57 VE 58
E
Sbjct: 125 NE 126
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 100 bits (251), Expect = 6e-26
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
C C K F + KHL+ H G + + C CGK F+ + K HQLVH+GE+
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 302 KCDI--CGLALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVHKK 349
+C CG + +L H+ +HTGDRP+ C C K+FA+ N + H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 93.7 bits (234), Expect = 1e-23
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 215 RPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
R C C + ++ A+ H+ H G C C K+F + L +H +H G K
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 273 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRP 328
+QC CGK F + + H +H+G+R C C ++L H+L H +
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 329 HE 330
++
Sbjct: 123 NQ 124
Score = 74.1 bits (183), Expect = 2e-16
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ C C K F +++ + H H G R C CG A S L RH LVHTG++P
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 329 HECSV--CGKRFAKKWNAQVHKK 349
+C+ CGKRF+ +N + H +
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVR 85
Score = 66.4 bits (163), Expect = 1e-13
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 28/113 (24%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 248
H C CGK + S+L H H+ +PF C G
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG------------------------- 69
Query: 249 FCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGER 299
C K F+ L H+ IH G + Y C C K F T+ K H L H+ +
Sbjct: 70 -CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 27.1 bits (61), Expect = 5.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ C + CT++FR ++ H+ H G + C C K F + L H + VH
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-H-GPRVHVCAECGKAFVESSKLKRH-QLVH 57
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 98.7 bits (247), Expect = 2e-25
Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 244 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGER 299
PF C CNK + + L H H G K YQC C + F K HQ H+G +
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 300 NVKCDICGLALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVHKK 349
+C C + HL H HTG++P C C K+FA+ H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 78.3 bits (194), Expect = 4e-18
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 189 HEC--PTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHP 244
C P C K++ +S L H + H+ +P+ C+ C + + L H H+G+ P
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVH 295
F C C + F++ L H H G K + C C K F H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 30.6 bits (70), Expect = 0.31
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K Y CD+ C R F R ++K H H G P QC C++KF+ + L H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 26.7 bits (60), Expect = 5.6
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 324 TGDRPHECS--VCGKRFAKKWNAQVHK 348
+ RP C+ C KR+ K + Q+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS 28
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 87.2 bits (217), Expect = 2e-21
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTG- 325
+G+ C +CGK F H+L HSGE+ C +CGL K ++ H+ H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 326 -DRPHECSVCGKRFAKKWNAQVHKKKVH 352
+P+ C CGK F++ + H K+VH
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 85.6 bits (213), Expect = 7e-21
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
SG C C K F L +H H+G K Y C +CG F +H H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 299 RN--VKCDICGLALTTKSHLNRHM-LVHTG 325
C CG + HLN H+ VH+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 72.1 bits (178), Expect = 5e-16
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 216 PFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG--TKKY 273
CEICG+ ++ L H HSG P++C C F +K + H+ H+G K Y
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 274 QCHLCGKGFIHHTSYKFH-QLVHSGER 299
C CGKGF H + VHSG
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 32.5 bits (75), Expect = 0.043
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
C+ C ++FR + H L H G+ P C C +F ++ + H + H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYH-VRSH 58
Score = 32.1 bits (74), Expect = 0.053
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKN--PNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y+C C F+R + HV H G P C C K F+ + L H+K+VH
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 84.9 bits (211), Expect = 1e-20
Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 260 LVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV----KCDICGLALTTKSH 315
H G K Y C C K F H + V C CG T ++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 316 LNRHMLVHTGDRPHECSVCGKRF 338
+ RH G E G
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 67.2 bits (165), Expect = 2e-14
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 204 LNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH----PFTCHFCNKSFTQKIG 259
+ +TH+ +P+ C C + ++ K+ L +H + + F C C K+FT++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 260 LVKHLNIHNGTKKYQCHLCGKGF 282
+ +H + G + G
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 59.8 bits (146), Expect = 9e-12
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTG----DRPHECSVCGKRFAKKWNAQV 346
H+GE+ C C K L+ H + CS CGK F ++
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 347 HKK 349
H
Sbjct: 66 HAD 68
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 315 HLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
HTG++P+ CS C K F +K +H K+ H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 31.0 bits (71), Expect = 0.11
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
C CGK + + + H + E G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG 82
Score = 25.9 bits (58), Expect = 7.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLV---KHLGKNPNQCTFCEKKFNSRNGLYVH 50
K Y C +C + FR+ + H + C+ C K F RN + H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 84.4 bits (210), Expect = 1e-20
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 304
F C C KSF + L HL IH+ T+ Y C CGK F + K H +H+GE+ KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 305 ICGLALTTKSHLNRHMLVHTG 325
+CG A + S+L H HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 81.3 bits (202), Expect = 1e-19
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+ C +CGK F ++ H L+HS R C CG KS + +H +HTG++PH+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 333 VCGKRFAKKWNAQVHKK 349
VCGK F++ N H +
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 70.1 bits (173), Expect = 2e-15
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
F C+ICG+ +K L H+ +HS P+ C +C K F QK + KH IH G K ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 277 LCGKGFIHHTSYKFHQLVHSG 297
+CGK F ++ H H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 62.8 bits (154), Expect = 6e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF 249
+C CGK ++ S L+ H+ HSD RP+ C+ CG+ + K + H +H+G P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 250 CNKSFTQKIGLVKHLNIHNG 269
C K+F+Q L+ H H G
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 28.5 bits (65), Expect = 0.93
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ Y C YC + F + ++K H + H G+ P++C C K F+ + L H + H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 27.4 bits (62), Expect = 2.1
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ C C + F+R + H+L+ H P C +C K+F+ ++ + H +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKH-TFIH 52
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 84.8 bits (211), Expect = 1e-20
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 301
P+ C C++ F+Q L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 KCDICGLALTTKSHLNRHMLVHTG 325
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLR 87
Score = 75.2 bits (186), Expect = 3e-17
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 328
+ Y C + C + F S H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 329 HECSVCGKRFAKKWNAQVHKK 349
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 70.2 bits (173), Expect = 2e-15
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 215 RPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
RP+ C + C + + +L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 64.4 bits (158), Expect = 2e-13
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 189 HECPT--CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
+ CP C +++ L HI+ H+ +PF C IC + + L H+ H+G PF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 247 CHFCNKSFTQKIGLVKHLNIHNGTK 271
C C + F + +H IH K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 34.7 bits (81), Expect = 0.006
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K + C C R F R + H+ H G+ P C C +KF + H K+H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH-TKIH 85
Score = 30.5 bits (70), Expect = 0.17
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
+ Y C C R F + G + H+ + H G+ P QC C + F+ + L H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTH 53
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 78.4 bits (194), Expect = 2e-18
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 267 HNGTKKYQCHL--CGKGFIHHTSYKFHQ-LVHSGERNVKCD--ICGLALTTKSHLNRHML 321
+G+ C CG+ F + H+ H +++ C CG + K HL HM
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 322 VHTGDRPHECSVCGKRF 338
+H+ R + C G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 61.4 bits (150), Expect = 2e-12
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 215 RPFVCEI--CGQGYKMKKALLVHV-GMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNG 269
C+ CG+ + ++ L H H F+C C KSF K L +H+ +H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 270 TKKYQCHLCGKGF 282
T+ Y C G
Sbjct: 66 TRDYICEFSGPSS 78
Score = 56.0 bits (136), Expect = 1e-10
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 295 HSGERNVKCDI--CGLALTTKSHLNRHM-LVHTGDRPHECS--VCGKRFAKKWNAQVHKK 349
SG + CD CG + + +LN H H + C CGK F K + + H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-M 60
Query: 350 KVH 352
K+H
Sbjct: 61 KLH 63
Score = 36.8 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 189 HECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
CP CGK + L H++ HSD R ++CE G
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 33.3 bits (77), Expect = 0.017
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTF--CEKKFNSRNGLYVHLKKVH 55
CD+ C R+F + +H +H+ + C C K FN + L H K+H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLH 63
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKF 41
K ++C C + F +K H+ + H C F
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICEFSGPSS 78
Score = 26.7 bits (60), Expect = 3.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 26 HLGKNPNQCTF--CEKKFNSRNGLYVHLKKVH 55
G + C F C + F++R L H K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 77.1 bits (191), Expect = 4e-18
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 259 GLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNR 318
G IH+G K Y C CGK F + HQ VH+GE+ KC CG A + S L
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 319 HMLVHTGDRPH 329
H +HT
Sbjct: 61 HQRIHTSGPSS 71
Score = 67.9 bits (167), Expect = 8e-15
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 232 LLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
G+HSG P+ C C K+F++ LV+H +H G K Y+C CGK F ++ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 292 QLVHSGER 299
Q +H+
Sbjct: 62 QRIHTSGP 69
Score = 62.5 bits (153), Expect = 7e-13
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+HSGE+ C CG A + S L +H VHTG++P++C CGK F++ H++
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 53.2 bits (129), Expect = 1e-09
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 204 LNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKH 263
+ HS +P+ C CG+ + L+ H +H+G P+ C C K+F+Q GL+ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 264 LNIHNGTKKY 273
IH
Sbjct: 62 QRIHTSGPSS 71
Score = 37.1 bits (87), Expect = 6e-04
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 316 LNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ +H+G++P+ C CGK F++ H++
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR 35
Score = 27.8 bits (63), Expect = 1.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K Y C C + F R + H V H G+ P +C C K F+ +GL H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLINH 61
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 74.8 bits (185), Expect = 3e-17
Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 256 QKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSH 315
+ ++Y+C CGK F H + H+ H+GE+ KCD CG A +SH
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 316 LNRHMLVHTGDRPHE 330
L H VHTG P
Sbjct: 62 LIGHHRVHTGSGPSS 76
Score = 65.5 bits (161), Expect = 5e-14
Identities = 22/68 (32%), Positives = 27/68 (39%)
Query: 232 LLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
+ C C KSF+ L KH H G K Y+C CGK FI + H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 292 QLVHSGER 299
VH+G
Sbjct: 66 HRVHTGSG 73
Score = 62.5 bits (153), Expect = 7e-13
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 284 HHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWN 343
S + R KCD CG + + S L++H HTG++P++C CGK F ++ +
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 344 AQVHK 348
H
Sbjct: 62 LIGHH 66
Score = 52.8 bits (128), Expect = 2e-09
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 202 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLV 261
+ R + C+ CG+ + L H H+G P+ C C K+F Q+ L+
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 262 KHLNIHNGTKKY 273
H +H G+
Sbjct: 64 GHHRVHTGSGPS 75
Score = 26.3 bits (59), Expect = 4.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
++Y CD C + F ++ H H G+ P +C C K F R+ L H +VH
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGH-HRVH 69
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 74.9 bits (185), Expect = 4e-17
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHT 324
T CGK + + K H H+GE+ CD CG L RH HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 325 GDRPHECSVCGKRFAKKWNAQVHKK 349
G RP +C C + F++ + +H K
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 74.5 bits (184), Expect = 6e-17
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHS 296
+ H C K++T+ L HL H G K Y C CG F H H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 297 GERNVKCDICGLALTTKSHLNRHMLVH 323
G R +C C A + HL HM H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 62.2 bits (152), Expect = 1e-12
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 26/108 (24%)
Query: 188 IHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 247
+ CGK + S L AH++TH+ +P+ C
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC--------------------------DW 40
Query: 248 HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVH 295
C F + L +H H G + +QC C + F H H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 32.5 bits (75), Expect = 0.044
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
K Y CD+ C F R E+ H KH G P QC C++ F+ + L +H+K
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 28.6 bits (65), Expect = 0.80
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCT--FCEKKFNSRNGLYVHLKK 53
C + + + +K H L H G+ P C C KF + L H +K
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 74.5 bits (184), Expect = 5e-17
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
PF C C ++F++ L H+ H G K + C +CG+ F K H+ + +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61
Query: 304 DICGLALTTKSHLNRHML---VHTGDR 327
D L+ HL + G+R
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 73.3 bits (181), Expect = 2e-16
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 330
K +QC +C + F H H+GE+ CDICG RH + P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPIL 60
Query: 331 CSVCGKRFAKKWNAQVHKK 349
+ +K ++ +
Sbjct: 61 EDKVEELLSKNYHLENEVA 79
Score = 64.1 bits (157), Expect = 3e-13
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 273
++PF C IC + + L H+ H+G PF C C + F + +H +I +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPI 59
Query: 274 QCHLCGKGFIHHTSYKFHQL---VHSGER 299
+ + + GER
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 32.1 bits (74), Expect = 0.053
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K + C C R F R + H+ H G+ P C C +KF + H + +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH-RDIQ 54
Score = 30.5 bits (70), Expect = 0.18
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVH 50
K + CD C R F R E K H + P E+ + L
Sbjct: 30 KPFACDICGRKFARSDERKRHRDI-QHIL-PILEDKVEELLSKNYHLENE 77
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 72.5 bits (179), Expect = 2e-16
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 260 LVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRH 319
H ++ + K Y+C C F + + H+ VH+GE+ +C+ICG ++L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 320 MLVHTGDRPH 329
+H+G++P+
Sbjct: 65 TRIHSGEKPY 74
Score = 65.6 bits (161), Expect = 6e-14
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
H + ++ KCD C + K +L H VHTG++P+ C++CG +F + N + H +
Sbjct: 8 HSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 65.2 bits (160), Expect = 8e-14
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 232 LLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
H M P+ C C SF K L H +H G K Y+C++CG F + K H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 292 QLVHSGER 299
+HSGE+
Sbjct: 65 TRIHSGEK 72
Score = 54.0 bits (131), Expect = 7e-10
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 202 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLV 261
+ H +P+ C+ C ++ K L H +H+G P+ C+ C F + L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 262 KHLNIHNGTKKY 273
H IH+G K Y
Sbjct: 63 THTRIHSGEKPY 74
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 314 SHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
H + H + D+P++C C F K N HK
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
Score = 29.3 bits (67), Expect = 0.35
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y CD C FR G + +H V H G+ P +C C +FN L H ++H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTH-TRIH 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 71.8 bits (177), Expect = 3e-16
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 289 KFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTG--DRPHECSVCGKRFAKKWNAQV 346
HSGE+ +C IC T + H+L C C A+K + V
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 347 HKKKVH 352
H +K H
Sbjct: 64 HLRKQH 69
Score = 69.9 bits (172), Expect = 2e-15
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 260 LVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERN--VKCDICGLALTTKSHLN 317
H+G K Y+C++C F + K H L E C C + KS L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 318 RHM-LVHTGDRPH 329
H+ H+ P
Sbjct: 63 VHLRKQHSYSGPS 75
Score = 65.2 bits (160), Expect = 9e-14
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 232 LLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG--TKKYQCHLCGKGFIHHTSYK 289
HSG P+ C+ C+ FTQ + H+ + K+ C C +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 290 FHQ-LVHSGER 299
H HS
Sbjct: 63 VHLRKQHSYSG 73
Score = 49.4 bits (119), Expect = 3e-08
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 315 HLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
H+G++P+EC +C RF + ++H + H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
Score = 41.0 bits (97), Expect = 3e-05
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKN-PNQCTFCEKKFNSRNGLYVHLKKVH 55
K Y C C F + G +K H+L KH C C+ ++ L VHL+K H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 28.3 bits (64), Expect = 1.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNP 31
K+ C +C + R ++ H+ +H P
Sbjct: 44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 70.5 bits (173), Expect = 1e-15
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHT---GDRPHECSVCGKRFAKKWNAQVHKKKV 351
SG ++C+ICG K+ LN H H C CGKRF K + H+ K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 352 HGLDVPGT 359
H +
Sbjct: 62 HPALLLAP 69
Score = 64.3 bits (157), Expect = 1e-13
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIH---NGTKKYQCHLCGKGFIHHTSYKFHQLVH 295
SG C C + QK L H H ++ C CGK F S H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 296 SGERNVKC 303
+
Sbjct: 62 HPALLLAP 69
Score = 63.6 bits (155), Expect = 3e-13
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHS---GERNVKCDICGLALTTKSHLNRHMLV- 322
+G+ QC +CG S +HQ H+ C+ CG + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 323 HTGDRPHECSVCGKRFA 339
H G
Sbjct: 62 HPALLLAPQESSGPSSG 78
Score = 60.5 bits (147), Expect = 4e-12
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHS---GIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
CEICG + K +L H H+ F C FC K F + + H + +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 272 KYQCHLCGK 280
Sbjct: 66 LLAPQESSG 74
Score = 45.1 bits (107), Expect = 1e-06
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLV--KHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
C+ C R+ + H + + C FC K+F + + H K H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 31.2 bits (71), Expect = 0.096
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKF 41
++ C++C + F +P V H H
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 28.5 bits (64), Expect = 0.87
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 189 HECPTCGKKWRTVSELNAHIQT-HSDLRPFVCEICG 223
C CGK++ + AH H L E G
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 28.1 bits (63), Expect = 1.2
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEYSER 62
G + QC C + L H ++ H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-QRKHAETVAAL 37
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 71.1 bits (175), Expect = 1e-15
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 253 SFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLAL 310
S ++ IH C K + + K H H+GE+ KC C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 311 TTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
L RH HTG +P +C VC + F++ + +H K
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 66.9 bits (164), Expect = 4e-14
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGER 299
C + C K +T+ L HL H G K Y+C C F H H+G +
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 300 NVKCDICGLALTTKSHLNRHMLVHT 324
+C +C + + HL HM H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 60.7 bits (148), Expect = 5e-12
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 173 SQSGVLLSERACMPLIHEC--PTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKK 230
SG L +R IH C P C K + S L AH++TH+ +P+ C
Sbjct: 4 GSSGPDLEKRR----IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC----------- 48
Query: 231 ALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKF 290
T C+ F + L +H H G K +QC +C + F
Sbjct: 49 ---------------TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 291 HQLVH 295
H H
Sbjct: 94 HMKRH 98
Score = 34.9 bits (81), Expect = 0.006
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
K Y C + C F R E+ H KH G P QC C + F SR+ HL
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGVCNRSF-SRSD---HLAL 93
Score = 29.1 bits (66), Expect = 0.76
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 1 KKYTCD--YCTRLFRRPGEVKNHVLVKHLGKNPNQCTF--CEKKFNSRNGLYVHLKK 53
+ + CD CT+++ + +K H L H G+ P +CT+ C+ +F + L H +K
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 68.3 bits (168), Expect = 5e-15
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 294 VHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
S KC C + ++K+ L H +H DRP +C+ C + N H KK HG
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 67.5 bits (166), Expect = 1e-14
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
+ +C C + + H+ +H +R KC+ C S+L++HM GD
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 327 RPHECS 332
S
Sbjct: 64 MSGPSS 69
Score = 56.7 bits (138), Expect = 8e-11
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
+ S P C C K AL +H +H PF C++C+ Q L KH+ +G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 270 TKKYQC 275
Sbjct: 63 DMSGPS 68
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
C C+ ++ H H P +C +C + L H+KK
Sbjct: 8 HPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 66.8 bits (164), Expect = 2e-14
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 292 QLVHSGERNVKCDICGLALTTKSHLNRHMLV--HTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ GE +C +C T S+ RH + + + C C K F +K N H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 350 KVHGL 354
+H +
Sbjct: 62 IIHKI 66
Score = 55.3 bits (134), Expect = 2e-10
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHL--NIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS 296
G H + C C++ +T +H + K Y C C K F + H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 297 G 297
Sbjct: 65 K 65
Score = 54.9 bits (133), Expect = 2e-10
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVH--VGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 267
T + C++C + Y H + + C FC K FT+K + H+ I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 268 NG 269
+
Sbjct: 64 HK 65
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVK-HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNV 57
Y C C+R++ H + C FC K+F ++ + H+K +H +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 66.5 bits (163), Expect = 3e-14
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 273 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCD--ICGLALTTKSHLNRHMLVHTGDRP 328
Y CH CGK F H K HQ H+ + +C C + S L RH VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 329 HECSVCGKRFAKKWNAQVHKKKVH 352
+ C H + H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 51.9 bits (125), Expect = 5e-09
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 219 CEICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCH 276
E CG+ +K L VH H+ P+ C C+K F+ L +H +H G +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 277 LCGKGFIHHTSYKFHQ 292
C T Y H
Sbjct: 66 SCSFVGKTWTLYLKHV 81
Score = 32.2 bits (74), Expect = 0.039
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
Y C + C + F P +K H V H G + C + H+ + H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 62.9 bits (154), Expect = 4e-13
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
C++C A + HL RH HT ++P+ C +C + F ++ H +K+H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 56.7 bits (138), Expect = 5e-11
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH-QLVHSGE 298
F C C ++F ++ L +H H K Y C LC + F H Q +HSG
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 46.3 bits (111), Expect = 2e-07
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN-IHNG 269
R FVCE+C + + ++ L H H+ P+ C CN++FT++ L++H IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.2 bits (95), Expect = 4e-05
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEYS 60
+ + C+ CTR F R +K H H + P C C + F R+ L H +K+H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Query: 61 E 61
E
Sbjct: 60 E 60
Score = 36.3 bits (85), Expect = 8e-04
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV-GMHSG 241
C C + + L H ++H++ +P+ C +C + + + L+ H +HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 27.1 bits (61), Expect = 1.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 327 RPHECSVCGKRFAKKWNAQVHK 348
R C VC + FA++ + + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 61.9 bits (150), Expect = 2e-12
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 238 MHSGIHPFTCHFCNKSFTQKIGLVKHLN-IHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS 296
+ C+++F+ LV H+ H G + H+C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------------------ 60
Query: 297 GERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+C G + K L H+ VHTG++ S
Sbjct: 61 --YWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 38.8 bits (90), Expect = 3e-04
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 294 VHSGERNVKCDICGLALTTKSHLNRHML-VHTGDRPH--------ECSVCGKRFAKKWNA 344
+ + + C +T L H+ H G EC GK F K+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 345 QVH 347
H
Sbjct: 79 VNH 81
Score = 38.0 bits (88), Expect = 5e-04
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 189 HECPTCGKKWRTVSELNAHIQ-THSDLRPFV--------CEICGQGYKMKKALLVHVGMH 239
+C + + T+ EL H+ H C G+ +K K L+ H+ +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 240 SGIHPFTC 247
+G
Sbjct: 86 TGEKSGPS 93
Score = 36.5 bits (84), Expect = 0.002
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQ--------CTFCEKKFNSRNGLYVHLK 52
C R F E+ HV ++H+G C K F ++ L H+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI- 82
Query: 53 KVH 55
+VH
Sbjct: 83 RVH 85
Score = 29.6 bits (66), Expect = 0.51
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ C++ F++ + L H+ H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 27.2 bits (60), Expect = 3.1
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 322 VHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
+ C + F+ H H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 60.3 bits (147), Expect = 2e-12
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHM-LVHTGDRPHECSVCGKRFA 339
S + C CG + HLN H+ VHT +RPH+C V +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 53.0 bits (128), Expect = 1e-09
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHL-NIHNGTKKYQCHLCGKGF 282
S P+ C C K F++ L H+ +H + ++C + G
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHV-GMHSGIHPFTCHFCNKSFTQ 256
+ + S +P++C+ CG+G+ L H+ +H+ P C +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 322 VHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
+ +P+ C CGK F++ + H K+VH
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 36.8 bits (86), Expect = 6e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 189 HECPTCGKKWRTVSELNAHIQ-THSDLRPFVCEICGQGY 226
+ C +CGK + LN HI+ H+ RP C++ G
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNS 43
K Y C C + F RP + H+ H + P++C +S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.8 bits (60), Expect = 2.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVE 58
P C C K F+ + L H+K+VH E
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 60.9 bits (147), Expect = 6e-12
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNI-----HNGTKKYQCHLCGKGFIHHTSY 288
++ + +G F C C+ ++ + L H+N + + + S
Sbjct: 9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 289 KFHQLVHSGERNVKCDICGLALTTKSHLNRHM 320
+ ++ +KC CG + + L+ HM
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 58.6 bits (141), Expect = 5e-11
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 5/95 (5%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQ-----LVHSGERNVKCDICGLALTTKSHLN 317
+ +I G K++C C + H + + K L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
+ +C CG F + VH K
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 49.8 bits (118), Expect = 6e-08
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 202 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGM-----HSGIHPFTCHFCNKSFTQ 256
S + + F C+ C Y L VH+ + S +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 257 KIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
K L++ + K +C CG F H
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 49.0 bits (116), Expect = 1e-07
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 189 HECPTCGKKWRTVSELNAHIQ-----THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH 243
C C + T+ EL H+ + K++LL G
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 244 PFTCHFCNKSFTQKIGLVKHL 264
C +C SF L H+
Sbjct: 80 VLKCMYCGHSFESLQDLSVHM 100
Score = 42.4 bits (99), Expect = 3e-05
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 286 TSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQ 345
+S K + + +G +C C A T L HM TG + K+W+
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKP 63
Query: 346 VHKK 349
+
Sbjct: 64 RKRS 67
Score = 38.2 bits (88), Expect = 6e-04
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 314 SHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
S + + TG C C + VH +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 26.7 bits (58), Expect = 7.6
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHV-LVKHLGKNPNQCTFCEKKFNS 43
K+ C C+ + E+ H+ H + ++ K S
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KCDICG + +S LNRH +VHT ++P S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C KSF + L +H +H K
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P +C +CGK F + H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+C CGK + S LN H H+ +P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGER C+ CG SHL H+ H ++ S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 41.3 bits (98), Expect = 9e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C+ C K+F + L++HL H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G+RP+ C+ CGK F + + H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 27.5 bits (62), Expect = 0.81
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
C CGK + S L H++ H +
Sbjct: 14 GCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 55.4 bits (133), Expect = 2e-10
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 259 GLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNR 318
K IH G + +C CG FI ++ S + C+ C ++ LN+
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 319 HMLVHTGDRPH 329
+G +
Sbjct: 58 DEGNESGKKTS 68
Score = 43.5 bits (102), Expect = 4e-06
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 286 TSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQ 345
S Q +H G+R+ KC CG+ +S L+R + C C K ++
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 346 VHKK 349
+
Sbjct: 57 KDEG 60
Score = 43.1 bits (101), Expect = 6e-06
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 202 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLV 261
+ H R C CG + + S C C K Q+ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALN 56
Query: 262 KHLNIHNGTKKY 273
K +G K
Sbjct: 57 KDEGNESGKKTS 68
Score = 35.4 bits (81), Expect = 0.003
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 312 TKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ + +H GDR +CS CG F ++ K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT 39
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 3e-10
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C++CG A +HLN+H+ VHT + S
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.1 bits (100), Expect = 6e-06
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P++C+ C K+F L +HL +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C+VCGK F + H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
Score = 25.6 bits (57), Expect = 3.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + + LN H++ H+
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 4e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGER KC+ CG +SHL H+ +H+ ++ S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG PF C+ C K F ++ L HL +H+ K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G+RP +C+ CGK F ++ + H +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CGK + S L H++ HS +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.6 bits (130), Expect = 4e-10
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GER C +CG A T +S+L +H +HTG++P S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+FT + L+KH IH G K
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG+RP+ C+VCGK F + N H+K
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
Score = 24.8 bits (55), Expect = 9.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+ C CGK + S L H + H+ +P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ KC CG + L+ H VHTG++ S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 304
+ +G K Y+C CGKG+ FHQ VH+GE+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C C K + +++ L H +H G K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
+G++P++C CGK + ++ + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 25.6 bits (57), Expect = 4.9
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK ++ +L+ H + H+ +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 5e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ CD CG A + L RH +HTG++P S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C +C K+F LV+H IH G K
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 9e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P+ C CGK F H++
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
Score = 25.2 bits (56), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
C CGK + +EL H + H+ +P
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
GE+ KCD+CG + SHL H VHTG++P S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 8e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C +CGK F + + HQ VH+GE+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
G + C C K F+Q L H +H G K
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
G++ ++C VCGK F++ + Q H+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 6e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG +K +L+ H VHTG+RP S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGKG+ + HQ VH+GER
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
+G P+ C C K + K L H +H G +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C CGK + K+N +H+K
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK + + L+ H + H+ RP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 24.4 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
G+ P +C C K +NS+ L +H +KVH
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 6e-10
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
S E+ KC+ CG + +L+ H VH G++ S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 45.9 bits (110), Expect = 2e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ + K Y+C CGKG+ + HQ VH GE+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
S P+ C C K + +++ L H +H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
+ ++P++C CGK + ++ N +H ++VH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
Score = 24.8 bits (55), Expect = 8.3
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK + L+ H + H +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 24.8 bits (55), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
+ P +C C K +N R L +H ++VH
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 6e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG + + HL +H VHTG++P S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C KS+ Q++ L +H +H G K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P +C CGK + ++ + H++
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
Score = 24.8 bits (55), Expect = 8.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CGK + L H + H+ +P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 7e-10
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
GE+ +C CG + + L +H + HT ++P S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K YQC CGK F H + H+ E+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
G P+ C C KSF+ L +H H K
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G++P++CS CGK F+ + H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK + L H TH+ +P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 53.9 bits (130), Expect = 7e-10
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 286 TSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKK 341
+ Q+ S R+ C CG SHL H HTG++P CS C +RFA+
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 342 WNAQVHKKK 350
H++
Sbjct: 63 DELSRHRRT 71
Score = 47.0 bits (112), Expect = 2e-07
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 202 SELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQK 257
S + S +R +C CG+ Y L H H+G PF+C + C + F +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 258 IGLVKHLNIH 267
L +H H
Sbjct: 63 DELSRHRRTH 72
Score = 40.4 bits (95), Expect = 4e-05
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 259 GLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKS 314
G + + + C CGK + + K H H+GE+ C C
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 315 HLNRHMLVH 323
L+RH H
Sbjct: 64 ELSRHRRTH 72
Score = 40.1 bits (94), Expect = 6e-05
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 229 KKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIH 284
S I C C K++ + L H H G K + C C + F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 285 HTSYKFHQLVH 295
H+ H
Sbjct: 62 SDELSRHRRTH 72
Score = 32.7 bits (75), Expect = 0.022
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 313 KSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVHKKK 350
S + + + R H CS CGK + K + + H +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C CG A T +S+L +H +HT +P S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+FT + L+KH IH K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C+ CGK F + N H+K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
Score = 25.9 bits (58), Expect = 3.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + S L H + H+ +P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG + T KS L H HTG+R S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 44.4 bits (106), Expect = 9e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGK F + + HQ H+GER+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C KSFT K L H H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++CS CGK F K ++H+K
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK + S L H + H+ R
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 8e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG + KS L+ H +HTG+ P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 41.8 bits (99), Expect = 6e-06
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C KSF +K L H IH G
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG++P+ECS CGK F KK VH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + S+L+ H + H+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 9e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ KC CG A HL H+ +HTG++P S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
SG PF C C K+F Q I L HL IH G K
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P +C CGK F + + H +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+C CGK +R L +H++ H+ +P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 9e-10
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG A T +S+L H +HTG++P S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGK F ++ HQ +H+GE+
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+FT + L H IH G K
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 8e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C+ CGK F + N H+K
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
Score = 25.9 bits (58), Expect = 3.5
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + S L H + H+ +P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 9e-10
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GER KC+ CG + +HL +H +HTG++P S
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P C+ C KSF Q L++H IH G K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG+RPH+C+ CGK F + + H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 9e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE C CG T K++L H +HTG+RP S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G + C CGK F H T+ HQ +H+GER
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G +PF C C K FT K L+ H IH G +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG+ P CS CGK F K N +H+K
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
Score = 26.7 bits (60), Expect = 1.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
C CGK + + L H + H+ RP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-09
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ KC CG A +HLN H +HTG RP S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 41.3 bits (98), Expect = 9e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C C K+F + L +H IH G +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P++CS CGK F + + H++
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG A T KS L+ H HTG+R S
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGK F + HQ H+GER+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+FT+K GL H H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++CS CGK F +K +H++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK + S L+ H Q+H+ R
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.6 bits (127), Expect = 1e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
S ++ +C CG T KSHLN+H +HTG++P S
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
S CH C + FT K L +H IH G K
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ + H+C CG+ F K + H++
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 31.0 bits (71), Expect = 0.056
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 207 HIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 247
+ S + C CG+G+ +K L H +H+G P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
H+C CG+ + S LN H + H+ +P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC +CG A SHL +H VH+G+RP S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C +CGK F + H VHSGER
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 41.7 bits (99), Expect = 7e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F LV+H ++H+G +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C VCGK F + H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
Score = 24.8 bits (55), Expect = 7.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CGK +R S L H HS RP
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ +C+ CG T SHL+ H VHTG++P S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 9e-07
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
SG PF C C K FTQ L H +H G K
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +G K +QC CGK F ++ HQ VH+GE+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P +C CGKRF + + H++
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
Score = 25.2 bits (56), Expect = 6.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CGK++ S L++H + H+ +P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GER+ +C CG A KS L H +HTG++P S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G + C C K+F +K L+ H IH G K
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG+R +ECS CGK FA+K +H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + S L H + H+ +P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C+ CG + KSHLNRH +HTG++P S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 6e-06
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C KSF QK L +H IH G K
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C+ CGK F +K + H++
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
Score = 25.2 bits (56), Expect = 5.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + S LN H + H+ +P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ KC+ CG T S L+ H VHTG++P S
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +G K ++C CGK F ++ HQ VH+GE+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG PF C C K FTQ L H +H G K
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P +C CGKRF + H++
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G ++ +C CG A T KS L+ H +HTG++P S
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C CGK F ++ HQ +H+GE+
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G F C C K+FT+K L H IH G K
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG + EC+ CGK F +K +H+K
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
Score = 26.3 bits (59), Expect = 2.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
EC CGK + S L+ H + H+ +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C CG A + LN+H +HTG++P S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K + C CGK F H H+ +H+GE+
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C K+F+ IGL +H IH G K
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P +C CGK F+ H++
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+C CGK + LN H + H+ +P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ KC+ CG T SHL H +HTG++P S
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +G K Y+C+ CGK F ++ H +H+GE+
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C+ C K FTQ L H IH G K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P++C+ CGK F + + H +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG + +S LN H +HTG++P S
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C CGKGF ++ H +H+GE+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C K F+++ L H +H G K
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P +C CGK F+++ VH K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
Score = 25.9 bits (58), Expect = 3.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CGK + S LN H + H+ +P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCG 335
SGE+ KC+ CG T S H H+G++P S G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICG 307
+ +G K ++C CGKGF ++ HQ HSGE+ G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCG 279
SG PF C C K F H H+G K G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
+G++P +C CGK F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 28.3 bits (64), Expect = 0.39
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
+C CGK + T S+ +H ++HS +P G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG SHL RH L+HTG++P S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
+G P+ CH C K F + L +H IH G K
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C CGK F + + H+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G++ KC+ C T S L H +HTG++P S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C+ C K F +S HQ +H+GE+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G F C+ C K+FTQ L H IH G K
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G + +C+ C K F + + VH++
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG A K++L +H +HTG++P S
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGK F + HQ +H+GE+
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F QK L +H IH G K
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C CGK FA+K N H++
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SG++ +C C HLN+H VHTG+R S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C C K+F Q L +H +H G +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G +P+EC C K F + + HK+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 27.9 bits (63), Expect = 0.64
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+EC C K + + LN H + H+ R
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG T SHL RH VHTG +P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 41.7 bits (99), Expect = 9e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K FTQ L +H +H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F + + H++
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 3e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG T SHL RH +HTG++P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 9e-06
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K FTQ L +H IH G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F + + H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG + L H +VHTG++P S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGKGFI H +VH+GE+
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K F + L H +H G K
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
TG++P++C CGK F + + H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH 32
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
++C CGK + +L H H+ +P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G++ KC+ CG T SHL RH +HTG++P S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K FTQ L +H IH G K
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.007
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG +P++C+ CGK F + + H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C CG A ++KS+L HM H+G++P S
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F+ K L+ H+ H+G K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G++P+ CS CGK F+ K +H +
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
Score = 27.9 bits (63), Expect = 0.65
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + + S L H++THS +P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 51.3 bits (124), Expect = 3e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG + + S L H +HTG++P S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C CGK F + HQ +H+GE+
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 1e-05
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C KSF+ L H IH G K
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG++P EC+ CGK F+ H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
EC CGK + S+L H + H+ +P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG T SHL H +HTG +P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ CGK F ++ HQ +H+G +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
+G P+ C+ C K FTQ L H IH G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F + + H++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C ICG + T KS L+ H +HTG++P S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 8e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C +CGK F + HQ +H+GE+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C KSFT+K L H IH G K
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG++P+ECS+CGK F KK VH
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + S+L+ H Q H+ +P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C +C A T K+HL +H HTG++P S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C+K+FTQK L +H H G K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+EC VC K F +K + H+K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+EC C K + + L H +TH+ +P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G+R +C CG A TKS L H HTG++P S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G + Y+C CGK F +S H+ H+GE+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 9e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F K L+ H H G K
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG RP+EC CGK F K + H++
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
Score = 27.9 bits (63), Expect = 0.60
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK ++T S L H ++H+ +P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 3e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG T SHL RH +HTG++P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K FTQ LV+H IH G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F + + H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG S+L+RH +HTG++P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ CGK F H++ HQ +H+GE+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
+G P+ C+ C K F L +H IH G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F H++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
Score = 25.6 bits (57), Expect = 3.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
++C CGK +R S L+ H + H+ +P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G + +C+ CG A + S L RH VHTG++P S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K YQC+ CGK F + HQ VH+GE+
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 9e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K+F+Q L +H +H G K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
TG +P++C+ CGK F++ H+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 24.8 bits (55), Expect = 9.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
++C CGK + S+L H + H+ +P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG A + +HL +H VHTG++P S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 8e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGK F T HQ VH+GE+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F+Q L++H +H G K
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+EC CGK F++ + H++
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KCD+C + S L H +HTG++P S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C +C K F + +S HQ +H+GE+
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C+KSF L H IH G K
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C VC K F + VH++
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 25.6 bits (57), Expect = 4.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C C K +R S L H + H+ +P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG A S +H +HTG RP S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 44.9 bits (107), Expect = 5e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C CGK F ++S HQ +H+G+R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 39.9 bits (94), Expect = 3e-05
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F +H +H G +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C CGK F + H++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
Score = 25.6 bits (57), Expect = 4.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
++C CGK + S H + H+ RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG A + S L RH +HTG++P S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ CGK F + HQ +H+GE+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K+F+Q L +H IH G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F++ H++
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C+ CG A + +S L H +HTG +P S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ CGK F +S HQ +H+G++
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K+F+ + L H IH G K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+EC+ CGK F+ + + H+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
Score = 25.6 bits (57), Expect = 4.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+EC CGK + S L H H+ +P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 51.6 bits (123), Expect = 4e-09
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 272 KYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
KY C CG + K H H+ R C C + TK +L +HM +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 49.7 bits (118), Expect = 2e-08
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
C+ CG+ S L +H+ HT RP+ C+ C F K N H K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 48.2 bits (114), Expect = 6e-08
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
++CE CG K L H+ H+ + P+ C +CN SF K L KH+ +KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 45.1 bits (106), Expect = 6e-07
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ C C + L KH+ H + Y C C F + H + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 44.3 bits (104), Expect = 1e-06
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
+ C CG + + S L HI+TH+D+RP+ C C +K K L H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 33.5 bits (76), Expect = 0.010
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 KYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
KY C+ C ++P +K H+ H P CT+C F ++ L H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 51.0 bits (123), Expect = 4e-09
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G++ +C CG + K +L H +HTG++ S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 44.1 bits (105), Expect = 9e-07
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C KSF K LV H IH G K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C CGK F + HQ +H+GE++
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 36.8 bits (86), Expect = 5e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG +P EC+ CGK F K N H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 26.3 bits (59), Expect = 2.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
EC CGK +R L H + H+ +
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G + C+ CG A + S L H ++HTG++P S
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 7e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y C+ CGK F ++S HQ++H+GE+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G+ P+ C+ C K+F+ L H IH G K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG +P+ C+ CGK F+ + H+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
Score = 25.2 bits (56), Expect = 5.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + S L H H+ +P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG + S L++H +HTG++P S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 9e-07
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K+Y+C+ CGK F ++ HQ +H+GE+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 276
+G + C+ C K F++ L +H IH G K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++ ++C+ CGK F++ H+K
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GER+ +C CG A KS L+ H +H G++P S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G + Y+C CGK FI ++ HQ +H GE+
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G + C C K+F QK L H IH G K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG+R +ECS CGK F +K +H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 25.9 bits (58), Expect = 3.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + S L+ H + H +P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 52.6 bits (125), Expect = 5e-09
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
+ YQC LC H+ + C C L + H +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE-SKCEYK 68
Query: 328 PHECSVCGKRFAKKWNAQVHKKKVHGLD 355
C C + F ++ H+ +VH +
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 40.7 bits (94), Expect = 8e-05
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 188 IHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 247
+++C C K ++ E +H + + VC C + + H TC
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES-KCEYKKLTC 72
Query: 248 HFCNKSFTQKIGLVKH-LNIHN 268
C ++F + +H + +HN
Sbjct: 73 LECMRTFKSSFSIWRHQVEVHN 94
Score = 37.2 bits (85), Expect = 0.001
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 274
+ C +C H + + C +C+ F +H + KK
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEY-KKLT 71
Query: 275 CHLCGKGFIHHTSYKFHQ 292
C C + F S HQ
Sbjct: 72 CLECMRTFKSSFSIWRHQ 89
Score = 37.2 bits (85), Expect = 0.001
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 2 KYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHN 56
C YC+ F P + H C C + F S ++ H +VHN
Sbjct: 42 AAVCPYCSLRFFSPELKQEHE--SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 5e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C+ CG A S L H +HTG++P S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y C CGK FIH + + HQ +H+GE+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F L +H IH G K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C CGK F Q H++
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
Score = 26.3 bits (59), Expect = 2.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + S+L H + H+ +P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
GE+ KC C + + S L H VH G++P S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C C F +S + HQ VH GE+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.8 bits (99), Expect = 7e-06
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
G + C C+ F+Q L H N+H G K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G++ +C C F++ + ++H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC CG A KS L H H D+ S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P C C K+F K L+ H H K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P +C+ CGK F K +H++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 31.4 bits (72), Expect = 0.042
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 247
+ + + +P C CG+ + K L++H H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 28.3 bits (64), Expect = 0.46
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CGK + S+L H +TH D +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG A +S L H H+G++P S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ CGK F +S HQ HSGE+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K+F + L H H+G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
TG++P++C+ CGK F + + +H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ 32
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
++C CGK +R S L H THS +P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
GER +C CG S+ +H +HTG++P S
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 5e-07
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ +G + ++C CGK F+ +++ H+ +H+GE+
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 41.4 bits (98), Expect = 9e-06
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
G C C K F Q ++H IH G K
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G+R H CS CGK F + N H++
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 24.8 bits (55), Expect = 9.5
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
H C CGK + S H + H+ +P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 6e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ KC+ CG A S+L H ++HTG++P S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ CGK F H++ HQ++H+GE+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K+F L H IH G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 9e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P++C+ CGK F N H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
++C CGK +R S L H H+ +P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 6e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ C+ CG + KS L+ H HTG++P S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +G K Y C+ CGK F + HQ H+GE+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C+ C K+F+QK L H H G K
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P+ C+ CGK F++K H++
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK + S L+AH +TH+ +P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 50.7 bits (121), Expect = 6e-09
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVC 334
+ V C+ICG HLNRH L H+G++P+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 3e-04
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLC 278
C C K F L +H H+G K Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEIC 222
C CGK +R V LN H +HS +P+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.8 bits (77), Expect = 0.006
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCN 251
+ + CEICG+ ++ L H HSG P++ +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 31.4 bits (71), Expect = 0.035
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFC 37
K+ C+ C ++FR + H L H G+ P
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 29.9 bits (67), Expect = 0.16
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVHK 348
+ C +CGK F ++ HK
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHK 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 8e-09
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C +CG A + + L+ H +H+G +P S
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C +CGK F H S HQ +HSG++
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F+ + L H IH+G K
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ECSVCGK F+ + + VH++
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
Score = 26.3 bits (59), Expect = 2.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+EC CGK + L+ H + HS +P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 8e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C C A TKS+L H HTG++P S
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C C K F ++ HQ H+GE+
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 9e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C K+F K L+ H H G K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG++P ECS C K F K N VH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
EC C K + T S L H +TH+ +P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
+GE+ +C+ C A TKS+L H HTG+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C+ C K F ++ HQ H+GE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C+ C K+F K L+ H H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 39.0 bits (92), Expect = 8e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+EC+ C K F K N VH++
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC C K + T S L H +TH+
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 50.3 bits (121), Expect = 8e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C CG + S L +H VH+G++P S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 7e-07
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y C CGK F + HQ VHSGE+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 42.6 bits (101), Expect = 4e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C KSF L+KH +H+G K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P+ C CGK F H++
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
Score = 27.5 bits (62), Expect = 0.85
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+ C CGK +R S L H + HS +P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 9e-09
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C CG + + L +H +H+G++P S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 44.4 bits (106), Expect = 8e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y C CGK F H+ +HSGE+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G + C C KSF++ L+KH +H+G K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++ + C CGK F++ H++
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 25.6 bits (57), Expect = 4.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+ C CGK + L H + HS +P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +CD+C A + + L +H VH+G++P S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 47.1 bits (113), Expect = 9e-08
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y+C +C K F HH S HQ VHSGE+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P+ C C K+F+ L +H +H+G K
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
TG++P+EC VC K F+ + H+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ 32
Score = 25.9 bits (58), Expect = 3.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
+EC C K + + L H + HS +P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 49.8 bits (120), Expect = 1e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G KC C + + K L H +HT ++P S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G Y+C C K F HQ +H+ E+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 41.8 bits (99), Expect = 7e-06
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G++P+ C C KSF+ K+ L+ H +H K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G P++CS C K F+ K VH++
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 25.6 bits (57), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVH 50
G NP +C+ CEK F+ + L VH
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 49.9 bits (120), Expect = 1e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHM-LVHTGDRPHECS 332
+G++ +C CG A + L RH HTG++P S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.9 bits (94), Expect = 4e-05
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHL-NIHNGTKKYQC 275
+G P+ C C K+F Q L++H H G K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 39.5 bits (93), Expect = 5e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
TG +P+EC CGK F + + H + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 24.8 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVH 55
GK P +C C K F L H + H
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE +C CG A + K L H H G++P S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 234 VHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G +P+ CH C K+F++K L+ H H G K
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G Y+CH CGK F HQ H+GE+
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG+ P+EC CGK F++K+ H++
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR 33
Score = 25.9 bits (58), Expect = 2.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + +L +H +TH+ +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG + + S L H +HTG+ P S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K ++C CGK F ++ HQ +H+GE
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 41.8 bits (99), Expect = 8e-06
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G P C C KSF+ L+ H IH G
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG++PHEC CGK F+ VH
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
HEC CGK + S+L H + H+ P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPH 329
GE+ KC+ CG +HL H+L+HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
G K Y+C CG F+ + H L+H+G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 41.7 bits (99), Expect = 7e-06
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 273
G G P+ C C F Q L H+ IH G+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 37.5 bits (88), Expect = 2e-04
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
G++P++C CG RF + + + H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 25.2 bits (56), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 189 HECPTCGKKWRTVSELNAHIQTH 211
++C TCG ++ V+ L AH+ H
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIH 34
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+G + C C + KS L H HTG +P S
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y C C K F + HQ H+G +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G+ P+ C C K+F+ K L+ H H G K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
TG +P+ CS C K F+ K VH
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+ C C K + S+L H ++H+ ++P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
+G + C+ CG A +KS+L H HTG+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G K Y C+ CGK F + H H+GE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G+ P+ C+ C K+F K L+ H H G
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHK 348
TG +P+ C+ CGK F K +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT 32
Score = 27.8 bits (63), Expect = 0.60
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+ C CGK +R+ S L H +TH+
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
SGE+ +C+ CG A KS L H H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 44.4 bits (106), Expect = 9e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +G K Y+C+ CGK FI + H+ H+G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P+EC+ CGK F K VH++
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
Score = 39.1 bits (92), Expect = 6e-05
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P+ C+ C K+F K L+ H H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 247
+ + S +P+ C CG+ + K L+VH H+G+ +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 25.6 bits (57), Expect = 3.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + S L H +TH+ +
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 294 VHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE+ C C A ++KS+L H H ++P S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG PF C C K+F+ K L+ H H K
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 266 IHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+G K + C C K F + HQ H+ E+
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 322 VHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P CS C K F+ K VH++
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 29.4 bits (67), Expect = 0.15
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 247
S +PF C C + + K LLVH H+ P
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 28.3 bits (64), Expect = 0.46
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
C C K + + S L H QTH++ +P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.6 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVH 50
G+ P C+ CEK F+S++ L VH
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.4 bits (116), Expect = 4e-08
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ +C CG+ + L +H+ H P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C C +F+ L KHL H T
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.8 bits (99), Expect = 8e-06
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 304
+ G K +QC CG F S H H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 35.3 bits (82), Expect = 0.002
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG++P +C CG F+ + H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 28.3 bits (64), Expect = 0.39
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+C CG + L H+++H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.5 bits (114), Expect = 6e-08
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
+GE +C CG + K L H H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ G Y+C CGK F HQ HSG+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G +P+ C C K F++K LV H H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG+ P+EC CGK F++K H+K
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
Score = 25.5 bits (57), Expect = 4.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + +L +H +THS
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPH 329
GE+ C+ICG L H+ +HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 42.5 bits (101), Expect = 3e-06
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
G K Y C +CG F H + K H +H+G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 41.7 bits (99), Expect = 7e-06
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 273
G G P+ C C F L HL IH G+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 39.0 bits (92), Expect = 7e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVH 347
G++P+ C +CG RF + H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
+ +P+ CEICG ++ + L H+ +H+G P +
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 27.8 bits (63), Expect = 0.52
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPF 217
+ C CG ++R + L +H++ H+ P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 47.7 bits (114), Expect = 1e-07
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 294 VHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
V R C + C + L RH+ +HTG +P +C +C + F++ + H +
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 45.0 bits (107), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 202 SELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIG 259
+ L ++ RP+ C E C + + L H+ +H+G PF C C ++F++
Sbjct: 7 NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 260 LVKHLNIH 267
L H+ H
Sbjct: 65 LTTHIRTH 72
Score = 44.2 bits (105), Expect = 2e-06
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 238 MHSGIHPFTCH--FCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVH 295
+ + P+ C C++ F++ L +H+ IH G K +QC +C + F H H
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Query: 296 S 296
+
Sbjct: 73 T 73
Score = 43.4 bits (103), Expect = 4e-06
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 266 IHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 323
+ + Y C + C + F H +H+G++ +C IC + HL H+ H
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Query: 324 T 324
T
Sbjct: 73 T 73
Score = 36.9 bits (86), Expect = 7e-04
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 1 KKYTCDY--CTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKK 53
+ Y C C R F R E+ H + H G+ P QC C + F SR+ HL
Sbjct: 18 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNF-SRSD---HLTT 67
Score = 34.2 bits (79), Expect = 0.006
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 192 PTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
+C +++ EL HI+ H+ +PF C IC
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICM 56
Score = 30.4 bits (69), Expect = 0.18
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 314 SHLNRHMLVHTGDRPHECSV--CGKRFA 339
++L ++ RP+ C V C +RF+
Sbjct: 7 NNLLNYV--VPKMRPYACPVESCDRRFS 32
Score = 26.1 bits (58), Expect = 6.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHV 22
K + C C R F R + H+
Sbjct: 48 KPFQCRICMRNFSRSDHLTTHI 69
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPH 329
GE+ +CD CG A + K L H+ VHTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
G K Y+C CGK F S H VH+G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 41.4 bits (98), Expect = 8e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 273
G G P+ C C K+F+QK L+ H+ +H G+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
G++P+ C CGK F++K + VH +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 30.6 bits (70), Expect = 0.058
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
+ +P+ C+ CG+ + K +L+VH+ +H+G P +
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 25.2 bits (56), Expect = 4.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPF 217
+ C CGK + L HI+ H+ P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 292 QLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
SGE +C CG A K L H H G+
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG +P+ C C K+F +K L+ H H G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 265 NIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +G Y+C CGK F HQ H+GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVH 347
+G+ P+ECS CGK F +K H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISH 29
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVC 219
+EC CGK + +L +H +TH+
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 332
SGE++ CD CG S L H VH G++ S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 45.3 bits (108), Expect = 4e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 304
+ +G K + C CGK F + ++ + HQ VH GE+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.0 bits (89), Expect = 2e-04
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG TC C K+F L H +H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 37.6 bits (88), Expect = 2e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 352
+G++ H C CGK F ++H ++VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
Score = 29.1 bits (66), Expect = 0.23
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 207 HIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
+ S + C+ CG+ + AL +H +H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
H C CGK + +S L H + H +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 43.4 bits (103), Expect = 2e-06
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 291 HQLVHSGERNVKCD--ICGLALTTKSHLNRHMLVHTGDRPHECS 332
+GE+ C CG + L+RH H+G +P S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 41.9 bits (99), Expect = 6e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 235 HVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQC 275
+G PF C + C F++ L +H H+G K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 36.5 bits (85), Expect = 6e-04
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 319 HMLVHTGDRPHECSV--CGKRFAKKWNAQVHKKK 350
TG++P C+ CG RF++ H++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 34.6 bits (80), Expect = 0.003
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 263 HLNIHNGTKKYQCH--LCGKGFIHHTSYKFHQLVHSGERNVKCD 304
+ G K + C CG F H+ HSG +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.7 bits (70), Expect = 0.070
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 189 HEC--PTCGKKWRTVSELNAHIQTHSDLRPFVCE 220
C P CG ++ EL+ H ++HS ++P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
+ ++ C+ CG A T HL RH +HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 40.3 bits (95), Expect = 2e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+ +K Y C+ CGK F HQ +H+ +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
+ + C+ C K+FT+ L +H IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 34.5 bits (80), Expect = 0.003
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
T + + C+ CGK F + ++ H+K
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.7 bits (107), Expect = 2e-06
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 12/125 (9%)
Query: 238 MHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH--------LCGKGFIHHTSYK 289
+ SG + + +K + L + H T + + + + +SY
Sbjct: 6 VDSGSKKYLSN--HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 290 FHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
+ L C +C + ++ L +H+ C VC K F +A H
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVC 121
Query: 350 KVHGL 354
K H +
Sbjct: 122 KKHNI 126
Score = 44.5 bits (104), Expect = 5e-06
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNV 57
++ C C F +K H+ + C C+K+F S + H+ K HN+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 41.8 bits (97), Expect = 4e-05
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 201 VSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGL 260
S + + FVC +C + +L H + H C C K FT
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSA 116
Query: 261 VKHL-NIHNGT 270
+ H+ HN
Sbjct: 117 LDHVCKKHNIC 127
Score = 38.8 bits (89), Expect = 5e-04
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 229 KKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSY 288
+ + L + I F C C F+ + L +H+ C +C K F S
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSA 116
Query: 289 KFH 291
H
Sbjct: 117 LDH 119
Score = 36.1 bits (82), Expect = 0.004
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 236
CP C + + L HI+ VC +C + + + L HV
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHV 120
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 41.9 bits (99), Expect = 6e-06
Identities = 11/37 (29%), Positives = 11/37 (29%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
G Y C CGK F S HQ S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 41.5 bits (98), Expect = 9e-06
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPH 329
GE C CG + T + L H + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 41.1 bits (97), Expect = 1e-05
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 273
G G P+ C C KSFTQ+ L H + +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVHKK 349
G+ P+ C CGK F ++ + VH++
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 29.6 bits (67), Expect = 0.15
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
+ P++C CG+ + + +L VH S P +
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 25.7 bits (57), Expect = 3.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVE 58
G+ P C C K F R L VH ++ +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQS 37
Score = 24.9 bits (55), Expect = 7.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 189 HECPTCGKKWRTVSELNAHIQTHSDLRPF 217
+ C CGK + L H ++ S P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 40.6 bits (95), Expect = 2e-05
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 330
+GE KC C T +++L +H H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 39.8 bits (93), Expect = 4e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 235 HVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
+G +PF C C++ FTQ+ LV+H H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 34.4 bits (79), Expect = 0.003
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 262 KHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ G ++C C + F H+ H+ +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 32.9 bits (75), Expect = 0.011
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 318 RHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGT 359
G+ P +CS C + F ++ H++ P +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
Score = 28.7 bits (64), Expect = 0.35
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 206 AHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
+ + + PF C C + + + L+ H H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 27.5 bits (61), Expect = 0.75
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVE 58
G+NP +C+ C++ F RN L H ++ H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQH-ERTHARK 38
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+G + Y+C CGK F S H+ +H+G
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 39.1 bits (92), Expect = 7e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPH 329
SG+R +C CG + K L H +HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.6 bits (88), Expect = 2e-04
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 273
SG + C C KSF QK L H IH G+
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVH 347
+G R +EC CGK F +K + +H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH 29
Score = 24.8 bits (55), Expect = 7.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 209 QTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 246
S R + C+ CG+ ++ K +L +H +H+G P +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 7e-05
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHEC 331
SGE+ C C + + L +H +HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 38.5 bits (90), Expect = 9e-05
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 303
+G K Y C C + F + HQ +H+ +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.5 bits (85), Expect = 5e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 275
SG P++C C ++F+ LV+H +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.1 bits (76), Expect = 0.010
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G++P+ C+ C + F+ H+K
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 27.3 bits (61), Expect = 0.90
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
S +P+ C C + + L+ H MH+
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 26.1 bits (58), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 26 HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVE 58
G+ P C C++ F+ N L H +K+H V+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH-QKMHTVK 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.0 bits (90), Expect = 3e-04
Identities = 16/61 (26%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGKNPN---QCTFCEKKFNSRNGLYVHLKKVHNV 57
Y C YCT HV +H N C C + L H K H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 58 E 58
E
Sbjct: 77 E 77
Score = 33.2 bits (75), Expect = 0.034
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 285 HTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHM-LVHTG---DRPHECSVCGKRFAK 340
H + +Q E +C C + H+ H + + C C +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 341 KWNAQVHKKKVH 352
H K H
Sbjct: 63 YDALSEHNLKYH 74
Score = 27.0 bits (59), Expect = 3.7
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 260 LVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH-QLVHSGER---NVKCDICGLALTTKSH 315
+ Y+C C + FH H + C C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 316 LNRH-MLVHTGDRPHECSV 333
L+ H + H G+ + ++
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 27.0 bits (59), Expect = 4.6
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 207 HIQTHSDLRPFVCEICGQGYKMKKALLVHVGM-HSGI---HPFTCHFCNKSFTQKIGLVK 262
+ Q + C+ C HV H + + C CN + L +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 263 H-LNIHNGTKKYQCHL 277
H L H G + ++ +
Sbjct: 69 HNLKYHPGEENFKLTM 84
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.5 bits (81), Expect = 0.001
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHT 324
SG+R C IC A TTK++ RH+ VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 31.6 bits (71), Expect = 0.024
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 270
SG PF C C +FT K +HL +H T
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 29.3 bits (65), Expect = 0.17
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVHKK 349
+G RP C +C F K N H K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.9 bits (56), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 211 HSDLRPFVCEICGQGYKMKKALLVHVGMHS 240
S RPFVC IC + K H+ +H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 42/334 (12%), Positives = 79/334 (23%), Gaps = 89/334 (26%)
Query: 33 QCTFCEKKFNSRNGLYVHLKKVHNVEYSERIELVSNIPLD-EDITDA--ALLVDK----A 85
C E L + ++ R + SNI L I LL K
Sbjct: 191 NCNSPETVLEMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 86 LTIKPKESEQSSQSEDEGMDEGGRDSSGSEWTEET-DVFK---------ADKANLDLQGL 135
L + + + + F K D
Sbjct: 247 LLV---------------LLN--------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 136 EMSPEDRAESEVLGWKCFICDAQLTTETSYSVFYTMLSQSGVLLSERAC--MPL------ 187
+ + + LT + S+ L L P
Sbjct: 284 ATTTHISLDHHSMT---------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 188 --IHECPTCGKKWRTV--SELNAHIQ------THSDLRP-FV-CEICGQGYKMKKALLVH 235
I + W+ V +L I+ ++ R F + + LL
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 236 V---GMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHT---SYK 289
+ + S + S +K ++I + + + L + +H + Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 290 FHQLVHSGERNVKCD---ICGLALTTKSHLNRHM 320
+ S + SH+ H+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY-------SHIGHHL 481
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (80), Expect = 0.002
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVK 302
K +QC CG+ F + S HQ++H G++N
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 28.2 bits (62), Expect = 0.49
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
C C + F Q + L++H +H G K
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 25.5 bits (55), Expect = 5.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
S E++ +C CG L H ++H G +
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 36.5 bits (83), Expect = 0.002
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 1 KKYTCDYCTRLFRRP-GEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHN 56
+ C C + R+ +K H+ V ++ +C C K+F S+ GL H H+
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 32.2 bits (72), Expect = 0.055
Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 217 FVCEICGQ-GYKMKKALLVHVGM-HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
VC C K L H+ + C C K F K GL H + K
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 32.2 bits (72), Expect = 0.062
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 190 ECPTCGK-KWRTVSELNAHIQT-HSDLRPFVCEICGQGYKMKKALLVHV 236
CPTC +T+ L H++ C+ C + +K K L H
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Score = 28.0 bits (61), Expect = 2.0
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 245 FTCHFCNKSFTQKI-GLVKHL-NIHNGTKKYQCHLCGKGFIHHTSYKFHQLV 294
C CN + + GL KH+ +C C K F +H +
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.7 bits (89), Expect = 0.004
Identities = 27/212 (12%), Positives = 51/212 (24%), Gaps = 17/212 (8%)
Query: 90 PKESEQSSQSEDEGMDEGGRDSSGSEWTEETDVFKADKANLDLQGLEMSPEDRAESEVLG 149
P++++ S + D R GS + KA A E +R +
Sbjct: 5 PRKTKGKSSGKGN--DSTERSDDGSSQLRDKQNNKAGPATT-----EPGTSNREQYRARP 57
Query: 150 WKCFICDAQLTTETSYSVFYTMLSQSGVLLSERACMPLIHECPTCGKKWRTVSELNAHIQ 209
A + T + + G + + + K +
Sbjct: 58 GI-----ASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKD 112
Query: 210 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH-----PFTCHFCNKSFTQKIGLVKHL 264
T G + + +V G + + ++ V
Sbjct: 113 TDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLP 172
Query: 265 NIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS 296
+ YQCH+C H H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 34.4 bits (78), Expect = 0.064
Identities = 17/155 (10%), Positives = 44/155 (28%), Gaps = 1/155 (0%)
Query: 60 SERIELVSNIPLDEDITDAALLVDKALTIKPKESEQSSQSEDEGMDEGGRDSSGSEWTEE 119
+ + A L + P + + E ++ + +
Sbjct: 51 EQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQA 110
Query: 120 TDVFKADKANLDLQGLEMSPEDRAESEVLGWKCFICDAQLTTETSYSVFYTMLSQSG-VL 178
D K+ + + + S + + ++T + + + V
Sbjct: 111 KDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVG 170
Query: 179 LSERACMPLIHECPTCGKKWRTVSELNAHIQTHSD 213
L A ++C C + +L+AH+ +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 31.4 bits (70), Expect = 0.63
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 294 VHSGERNVKCDICGLALTTKSHLNRHMLVH 323
S +C +C L + L+ H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.0 bits (69), Expect = 0.82
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 1/59 (1%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTT 360
+ ++ + ++C VC + H HGL T
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASHGLHGNMTL 211
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 33.8 bits (78), Expect = 0.004
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 319 HMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 349
TG +P +C C + F++ + +H+K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 32.7 bits (75), Expect = 0.011
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIH 267
+GI PF C C++SF++ L H H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.9 bits (73), Expect = 0.018
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 323
+G + +C C + + HL H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (69), Expect = 0.068
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVH 295
G K +QC C + F H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.9 bits (60), Expect = 1.1
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 207 HIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 239
+ + ++PF C C + + L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 2.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 25 KHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
G P QC C++ F+ + L +H K
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.004
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTK 271
FTC +CNK F K L HL IH K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.0 bits (64), Expect = 0.19
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 212 SDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
S + F CE C + +K K +L H+ +H+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 24.8 bits (53), Expect = 7.1
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHV 22
K +TC+YC ++F+ ++ H+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHL 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 35.2 bits (80), Expect = 0.006
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 1 KKYTCDYCTRLFRRP-GEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLKKVHN 56
+C C + R+ +K H+ ++ + C C K+ S G+ H+ HN
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHM--ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 29.8 bits (66), Expect = 0.37
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 217 FVCEICGQ-GYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
C C G K + L H+ FTCH C K G+ H+ ++ +
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 29.8 bits (66), Expect = 0.43
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 190 ECPTCGK-KWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 236
CPTC +T+ L H++ F C CG+ + + HV
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHV 82
Score = 27.9 bits (61), Expect = 1.9
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 292 QLVHSGERNVKCDICG-LALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKK 350
L + +V C C + T L +HM C CGK+ + H
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMA 84
Query: 351 VHGLDVPG 358
H G
Sbjct: 85 NHNSLPSG 92
Score = 27.5 bits (60), Expect = 2.9
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 245 FTCHFCNK-SFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
+C C GL KH+ + + CH CGK K+H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYH 81
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.8 bits (71), Expect = 0.025
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 323 HTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
+G++P+ C VCG RF +K H + G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.8 bits (71), Expect = 0.031
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 211 HSDLRPFVCEICGQGYKMKKALLVHVGMHSG 241
S +P+ C +CG +K K + HV H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.5 bits (65), Expect = 0.18
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 239 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 270
SG P++C C F +K + H+ H+G+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 29.5 bits (65), Expect = 0.19
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHTG 325
SGE+ C +CGL K ++ H+ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 5.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 267 HNGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 297
+G K Y C +CG F +H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.045
Identities = 59/404 (14%), Positives = 97/404 (24%), Gaps = 148/404 (36%)
Query: 23 LVKHLGKNPNQCT-FCEKKFNSRNGLYVHLKKVHNVEYSERIELVSNIPLDEDI--TDAA 79
+ L + + N L + + +Y I +S PL I A
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIP-IS-CPL---IGVIQLA 247
Query: 80 --LLVDKALTIKPKESEQSSQSEDEGMDEGGRD-------SSGSEWTEETDVFKADKA-- 128
++ K L P E + G + + W KA
Sbjct: 248 HYVVTAKLLGFTPGELRSYLK----GATGHSQGLVTAVAIAETDSWESFFVS--VRKAIT 301
Query: 129 NLDLQGLE---------MSPEDRAESEVLGWKCFICDAQLTTET--SYSVFYTMLSQSGV 177
L G+ + P +S E S MLS S +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENN------------EGVPSP-----MLSISNL 344
Query: 178 LLSERACMPLIHECPTCGKKWRTVSELNAHIQTHSDL--------RPFVCEICGQGYKMK 229
+ + V++ N+H+ + + V + G
Sbjct: 345 TQEQ-----VQ----------DYVNKTNSHLPAGKQVEISLVNGAKNLV--VSG------ 381
Query: 230 KALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHL-NIHNGTKKYQCHLCGKGFIHHTSY 288
P + + GL L + Q I +
Sbjct: 382 -------------PPQSLY----------GLNLTLRKAKAPSGLDQSR------IPFSER 412
Query: 289 K-------------FH-QLVHSGERNVKCDICGLALTTKSHLNRHML---V-HTGD---- 326
K FH L+ + D+ ++ N + V T D
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS----FNAKDIQIPVYDTFDGSDL 468
Query: 327 RPHECSVCGK------RFAKKWNAQVHKKKVHGLDV-PGTTHRV 363
R S+ + R KW K H LD PG +
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Score = 33.9 bits (77), Expect = 0.098
Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 87/217 (40%)
Query: 95 QSSQSEDEGMDEGGRDSSGSEWTEETDVFKA--DKANLDLQGLEMSPEDRAESEVLGWKC 152
Q SQ + GMD +S + ++A D + G+
Sbjct: 1624 QGSQEQGMGMDL--YKTS--------KAAQDVWNRA------------DNHFKDTYGFS- 1660
Query: 153 FICDAQLTTETSYSVFYTMLSQSGVLLSERACMPLIHECPTCGKKWRTVSELNAHIQTHS 212
I D + + ++ + G+K + + E
Sbjct: 1661 -ILDIVINNPVNLTIHFG------------------------GEKGKRIRE--------- 1686
Query: 213 DLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH---FCNK-SFTQ------KIGLVK 262
+ + E G + + + HS + F + FTQ + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 263 HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS-GE 298
L G G HS GE
Sbjct: 1746 DLK-SKGLIPADATFAG---------------HSLGE 1766
Score = 29.2 bits (65), Expect = 2.9
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 37/105 (35%)
Query: 14 RPGEVKN-------HVLVKHLGKNPNQCTFCE---KKFNSRNGLYV---HLKKVHNVEYS 60
PG V +V+ +GK E +N N YV L+ +
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW--LVEIVN--YNVENQQYVAAGDLRAL------ 1862
Query: 61 ERIELVSNIPLDEDITDAALLVDKALTIKPKESEQSSQSED-EGM 104
+ V+N+ L+ K I E ++S E+ EG
Sbjct: 1863 ---DTVTNV-LNF---------IKLQKIDIIELQKSLSLEEVEGH 1894
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.7 bits (66), Expect = 0.095
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 242 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
+ P+ C C + F L +H+ IH G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.5 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVKHLGK 29
K Y C +C R F PG ++ HV + H G+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRI-HTGE 29
Score = 25.1 bits (54), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSG 241
++P+VC C + + AL HV +H+G
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTG 28
Score = 24.7 bits (53), Expect = 6.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K Y C C + F + + H +H+GE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.11
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDR 327
C++C A + HL RH HT ++
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (63), Expect = 0.36
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
+ + C +C + F K H H+ E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (60), Expect = 0.87
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
F C C ++F ++ L +H H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 1.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHV 22
+ + C+ CTR F R +K H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 24.6 bits (54), Expect = 7.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 327 RPHECSVCGKRFAKK 341
R C VC + FA++
Sbjct: 1 RSFVCEVCTRAFARQ 15
Score = 24.2 bits (53), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSG 241
R FVCE+C + + ++ L H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.8 bits (66), Expect = 0.14
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 326 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTTHRVMPVPP 368
D+P+ C +CGKR+ + H H + G P
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPT 47
Score = 27.4 bits (60), Expect = 1.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 215 RPFVCEICGQGYKMKKALLVHVG 237
+P+ C+ICG+ YK + L H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
Score = 26.7 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 31 PNQCTFCEKKFNSRNGLYVHLKKVHNVEYSERIELVSNIP 70
P C C K++ +R GL H H E + S P
Sbjct: 7 PYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPP 46
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.3 bits (73), Expect = 0.15
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 191 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 223
CP C + E + VC +CG
Sbjct: 24 CPECKVYPPKIVERFSEGDV-------VCALCG 49
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.16
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 302 KCDICGLALTTKSHLNRHMLVHTGDR 327
KC C A K++LN H+ HTG++
Sbjct: 11 KCPQCSYASAIKANLNVHLRKHTGEK 36
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 30.2 bits (68), Expect = 0.18
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 217 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQ 256
F C CG+ K K + HV +C C K F
Sbjct: 11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG 49
Score = 29.4 bits (66), Expect = 0.35
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH 291
FTC+ C +S KI + KH++ + C CGK F YK H
Sbjct: 11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDF-WGDDYKSH 55
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.0 bits (64), Expect = 0.20
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 327 RPHECSVCGKRFAKKWNAQVHKK 349
RP+ CSVCGKRF+ K + H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
Score = 27.8 bits (61), Expect = 0.49
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 214 LRPFVCEICGQGYKMKKALLVHVGMHSG 241
+RP+ C +CG+ + +K + H +H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.8 bits (53), Expect = 6.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 242 IHPFTCHFCNKSFTQKIGLVKHLNIHNG 269
+ P++C C K F+ K + H +H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.9 bits (65), Expect = 0.20
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 296 SGERNVKCDI--CGLALTTKSHLNRHMLVHTGDR 327
++ C I CG SHL H+ HTG+R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.2 bits (58), Expect = 2.2
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTK 271
CH C K + + L HL H G +
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.8 bits (57), Expect = 2.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 188 IHEC--PTCGKKWRTVSELNAHIQTHS 212
H C CGK + S L AH++ H+
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 25.8 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 271 KKYQCHL--CGKGFIHHTSYKFHQLVHSGER 299
K++ CH+ CGK + + + H H+GER
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.5 bits (73), Expect = 0.27
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 29 KNPNQCTFCEKKFNSRNGLYVHLKKVHNVEYSERIELVSNIPLDEDITDAALLVDKALTI 88
+ C C +F++ + L HL+ H + S L++ ++ I D +
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDDAS---TLLATPMINNAIRSFLTAWDDIRIL 170
Query: 89 KPKESEQS-SQSEDEGMDEG 107
P S +S S D + G
Sbjct: 171 SPDVSSKSLSAYLDSAVANG 190
Score = 29.4 bits (65), Expect = 2.8
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 329 HECSVCGKRFAKKWNAQVHKKKVHGLDVPGT 359
+ C+VC RF+ H + H D
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDASTL 147
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.6 bits (63), Expect = 0.31
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 215 RPFVCEICGQGYKMKKALLVHVGMHSG 241
+P C +CG+ + +L+ HV H+G
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 27.8 bits (61), Expect = 0.58
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 271
P C C K+FTQ L+ H+ H G K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.9 bits (56), Expect = 2.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 299
K QC +CGK F +S H H+GE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.3 bits (52), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 303 CDICGLALTTKSHLNRHMLVHTGDR 327
C +CG A T S L H+ HTG++
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.34
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 327 RPHECSVCGKRFAKKWNAQVHKKKVHGLDV 356
+ + C +C + F ++ H +K+H ++
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 27.5 bits (61), Expect = 0.67
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 31 PNQCTFCEKKFNSRNGLYVHLKKVHN 56
C C + F R+ L H +K+H+
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 27.1 bits (60), Expect = 0.90
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 244 PFTCHFCNKSFTQKIGLVKHL-NIHNGT 270
+ C CN++FT++ L++H IH+G
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSGN 29
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.6 bits (64), Expect = 0.34
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIH 267
+TC FC + F L H+N+H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
Score = 26.6 bits (59), Expect = 1.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 271 KKYQCHLCGKGFIHHTSYKFHQLVHSGERN 300
+ Y C C + F + H VH +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 34
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.0 bits (63), Expect = 0.44
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIHNGTK 271
PF C + C K FT+ L +H H G K
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 306 CGLALTTKSHLNRHMLVHTGDR 327
CG T L RH HTG++
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 24.5 bits (54), Expect = 6.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 327 RPHECSV--CGKRFAKKWNAQVHKKK 350
RP C+ CGKRF + Q HK+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.0 bits (62), Expect = 0.53
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTKK 272
F C C K F + L KH+ +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 25.6 bits (56), Expect = 3.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLRP 216
CP C K++ L+ HI H L
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGE 30
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.56
Identities = 7/61 (11%), Positives = 16/61 (26%)
Query: 207 HIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNI 266
I+ LR + E + +H + G + L +++
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Query: 267 H 267
Sbjct: 231 S 231
Score = 28.2 bits (62), Expect = 3.5
Identities = 6/53 (11%), Positives = 15/53 (28%)
Query: 187 LIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 239
+ K+ ++S+ H + E Q + L + +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.5 bits (60), Expect = 7.3
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 3 YTCDYCTRLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYVHLK 52
Y+ DY RL E + L G+ Q E+ ++ L +
Sbjct: 182 YSEDYMKRLHSMSQETIHRNL--ARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 27.1 bits (59), Expect = 8.6
Identities = 5/51 (9%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 249 FCNKSFTQKIGLVK----HLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVH 295
+ ++ + +++ + H N+ G K+ Q + + + +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 29.6 bits (66), Expect = 0.73
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 34 CTFCEKKFNSRNGLYVHLKKVHNVEYSE 61
C FC++ F S + H K H
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQFNIDS 45
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.83
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHT 324
E+ KC+ C + +L +H +HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 274 QCHLCGKGFIHHTSYKFHQLVHSGE 298
+C CGK F H + HQ +H+GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
Score = 26.4 bits (57), Expect = 2.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNG 269
C C K F L++H +H G
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAG 37
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 29.8 bits (67), Expect = 1.6
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 295 HSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGL 354
S E C C + L T + + C C K+ +V HG
Sbjct: 352 FSFEETTSCKACQMLLRG-----------TFYQGYRCYRCRAPAHKECLGRVPPCGRHGQ 400
Query: 355 DVPGT 359
D GT
Sbjct: 401 DFAGT 405
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHNGTK 271
F C C K F + L H+ +H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.2 bits (55), Expect = 4.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 190 ECPTCGKKWRTVSELNAHIQTHSDLR 215
CP C K++ L HI H + +
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase,
structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Length = 297
Score = 29.4 bits (67), Expect = 1.8
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 21/52 (40%)
Query: 356 VPGTTHR---------------VMPVPPIG--GGEKEEDVAVMIKQRLMQKP 390
+ G + V+ IG GG+ EE A MIK+ KP
Sbjct: 189 IVGLSFTEALKLFQEDPQTEALVL----IGEIGGDMEERAAEMIKKGEFTKP 236
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_B*
Length = 334
Score = 29.6 bits (67), Expect = 1.8
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 357 PGTTHRVMPVPPIG--GGEKEEDVAVMIKQRLMQKP 390
PG V+ +G GG +E + IK+ + KP
Sbjct: 222 PGVKMIVV----LGEIGGTEEYKICRGIKEGRLTKP 253
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.9 bits (64), Expect = 1.8
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 184 CMPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMK 229
C + +CP C + ++ +N HI R C+ C +
Sbjct: 106 CEFALMDCPQCQRPFQK-FHINIHILKDCPRRQVSCDNCAASMAFE 150
Score = 28.1 bits (62), Expect = 3.9
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 177 VLLSERACMPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 236
++R + L+ +CP G + Q H + C C + + K + +H+
Sbjct: 71 DNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHI 129
Query: 237 GMHSGIHPFTCHFCNKSFTQK 257
+C C S +
Sbjct: 130 LKDCPRRQVSCDNCAASMAFE 150
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 1.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 326
S + CD+CG +K L H L+HT D
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 26.3 bits (57), Expect = 2.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 268 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
+ K + C +CGK F + K H+L+H+ +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.9 bits (56), Expect = 2.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 245 FTCHFCNKSFTQKIGLVKHLNIHN 268
+ C C +SF +K L +H +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.1 bits (54), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 273 YQCHLCGKGFIHHTSYKFHQLVHS 296
Y+C LC + F+ ++ HQ VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 29.1 bits (65), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 357 PGTTHRVMPVPPIG--GGEKEEDVAVMIKQRLMQKP 390
PG V+ +G GG +E + IK+ + KP
Sbjct: 708 PGVKMIVV----LGEIGGTEEYKICRGIKEGRLTKP 739
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 3.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 296 SGERNVKCDICGLALTTKSHLNRHMLVHTGDR 327
S + KC +C A +KS+L HM H+ ++
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.7 bits (63), Expect = 3.3
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 29 KNPNQCTFCEKKFNSRNGLYVHLK-KVHNVEYSERIELVSN--------IPLDEDITDAA 79
C FC + F + + HL K+H S+R V + L+++ +
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTR 349
Query: 80 LLVDKALTIKPKESEQSSQSEDEGMDEGGRDSSGSEWTEETD 121
V++ L E + + DS+ E E+ D
Sbjct: 350 SFVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVD 391
Score = 27.9 bits (61), Expect = 6.5
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 1 KKYTCDYCTRLFRRPGEVKNHVLVK-HLGKNPNQCTFCEKKFNSRNGLYVHLKKVHNVEY 59
K C +C+R F+ ++H++ K H + F ++ +L
Sbjct: 291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHR-YLKYLND------ 343
Query: 60 SERIELVSNIPLDEDITDAALLVDKALTIKPKESEQSSQSEDEGMDEGGRDSSGSEWTEE 119
E S + T + + + + E+ +E EG ++ + + EE
Sbjct: 344 -EFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4
tetrahedral Zn+2, antiparallel beta strand and alpha
helix, NESG project; NMR {Escherichia coli} SCOP:
g.39.1.9
Length = 68
Score = 26.4 bits (58), Expect = 3.3
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 180 SERACMPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEIC 222
+ CPTCGK S RPF + C
Sbjct: 1 GSHMSETITVNCPTCGKT--------VVWGEISPFRPFCSKRC 35
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 25.9 bits (56), Expect = 3.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 33 QCTFCEKKFNSRNGLYVHLKKVHNVE 58
C FC+KK++ L H++ H+ +
Sbjct: 11 HCRFCKKKYSDVKNLIKHIRDAHDPQ 36
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 27.1 bits (59), Expect = 3.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 33 QCTFCEKKFNSRNGLYVHLKKVHNVEYSER 62
QC C+ K S L HL HN E+ +R
Sbjct: 27 QCKHCDSKLQSTAELTSHLNI-HNEEFQKR 55
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine
recognition, aromatic CAGE, complex, transcription
upregulation; 1.29A {Drosophila melanogaster}
Length = 101
Score = 26.9 bits (59), Expect = 4.1
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 84 KALTIKPKESEQSSQSEDEGMDEGGRDSSGSEWTEETDVFKADKANLDLQ 133
K L + + +E + + + G S T + K + N LQ
Sbjct: 43 KVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQ 92
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 4.4
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 244 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 298
C C+ + L +H + + G + C CG+ + K H V E
Sbjct: 17 LAVCQHCDLELSIL-KLKEHED-YCGARTELCGNCGR-NVLVKDLKTHPEVCGRE 68
Score = 25.7 bits (56), Expect = 6.9
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 291 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKK 350
H+ R C C L L+ L H + G R C CG+ K + + H +
Sbjct: 8 HEETECPLRLAVCQHCDLELS-ILKLKEHED-YCGARTELCGNCGRNVLVK-DLKTHPEV 64
Query: 351 VHG 353
Sbjct: 65 CGR 67
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 25.6 bits (56), Expect = 4.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 192 PTCGKKWRTVSELNAHIQTHSDLR 215
P C K ++ + +HIQTH + R
Sbjct: 24 PGCTKTFKRRYNIRSHIQTHLEDR 47
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.2 bits (54), Expect = 4.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 324 TGDRPHECSVCGKRFAKKWNAQVHKKKVHG 353
+G + C++C K+F + H ++VHG
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHG 32
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.0 bits (59), Expect = 5.5
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 34 CTFCEKKFNSRNGLYVHLK-KVHNVEYSERIELVSNIPLDEDITDAALLVDKALTIKPKE 92
C C + F L H + K H +R++ +S P ++ + A + + +
Sbjct: 53 CLACARYFIDSTNLKTHFRSKDHK----KRLKQLSVEPYSQEEAERAAGMGSYVPPRRLA 108
Query: 93 SEQSSQSEDEGMD 105
+E MD
Sbjct: 109 VPTEVSTEVPEMD 121
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 27.7 bits (62), Expect = 6.5
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 10 RLFRRPGEVKNHVLVKHLGKNPNQCTFCEKKFNSRNGLYV 49
R++++ + V L + R L+
Sbjct: 71 RVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY 110
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 7.2
Identities = 8/84 (9%), Positives = 22/84 (26%), Gaps = 5/84 (5%)
Query: 242 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKG-----FIHHTSYKFHQLVHS 296
C C+ + + H K + ++ ++
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 297 GERNVKCDICGLALTTKSHLNRHM 320
+R+ C +C + ++ H
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHY 113
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 27.7 bits (62), Expect = 7.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 290 FHQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 323
F+QL+H G + + CD G T + H +
Sbjct: 443 FYQLIHQGTKIIPCDFIGCVQTQNRVGDHHRTLM 476
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein,
RNA splicing, structural GENO joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Mus
musculus} PDB: 1o0p_A 1opi_A
Length = 105
Score = 26.3 bits (58), Expect = 8.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 256 QKIGLVKHLNIHNGTKKYQCHLCGKGFI 283
K GLVK + I + CGK F+
Sbjct: 37 SKYGLVKSIEIPRPVDGVEVPGCGKIFV 64
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 27.0 bits (59), Expect = 8.7
Identities = 11/76 (14%), Positives = 16/76 (21%), Gaps = 20/76 (26%)
Query: 274 QCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDR-PHECS 332
+ H + + +C CG VH G P C
Sbjct: 129 EFHEKRFLDFARNIKEGRVFLREQATKWRCRNCG-------------YVHEGTGAPELCP 175
Query: 333 VCG------KRFAKKW 342
C + W
Sbjct: 176 ACAHPKAHFELLGINW 191
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.2 bits (52), Expect = 9.3
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 244 PFTCHF--CNKSFTQKIGLVKHLNIH 267
P++C C+K+F + L++H H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.4 bits (55), Expect = 9.5
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 8 CTRLFRRPGEVKNHVLVKHLGKNPNQCTF--------CEKKFNSRNGLYVHLKKVH 55
C +++ H+L H+ ++ C+ + + H+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,893,637
Number of extensions: 339847
Number of successful extensions: 2517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2171
Number of HSP's successfully gapped: 996
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)