BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6754
         (79 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8N2M8|CLASR_HUMAN CLK4-associating serine/arginine rich protein OS=Homo sapiens
          GN=CLASRP PE=1 SV=4
          Length = 674

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79


>sp|A0JNI5|CLASR_BOVIN CLK4-associating serine/arginine rich protein OS=Bos taurus
          GN=CLASRP PE=2 SV=1
          Length = 670

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79


>sp|Q5HZB6|CLASR_RAT CLK4-associating serine/arginine rich protein OS=Rattus
          norvegicus GN=Clasrp PE=2 SV=2
          Length = 668

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79


>sp|Q8CFC7|CLASR_MOUSE CLK4-associating serine/arginine rich protein OS=Mus musculus
          GN=Clasrp PE=1 SV=3
          Length = 668

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79


>sp|D3ZTQ1|SFSWA_RAT Splicing factor, suppressor of white-apricot homolog OS=Rattus
          norvegicus GN=Sfswap PE=2 SV=1
          Length = 945

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 43 IHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR 79
          + G  CK+  D   ALA +    ++ W GD  I+IDR
Sbjct: 37 VFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDR 73


>sp|Q12872|SFSWA_HUMAN Splicing factor, suppressor of white-apricot homolog OS=Homo
          sapiens GN=SFSWAP PE=1 SV=3
          Length = 951

 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 43 IHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR 79
          + G  CK+  D   ALA +    ++ W GD  I+IDR
Sbjct: 37 VFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDR 73


>sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog OS=Mus
          musculus GN=Sfswap PE=1 SV=2
          Length = 945

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 43 IHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR 79
          + G  CK+  D   ALA +    ++ W GD  I+IDR
Sbjct: 37 VFGYACKLFRDDERALAQEQGQHLIPWMGDPKILIDR 73


>sp|P12297|SUWA_DROME Protein suppressor of white apricot OS=Drosophila melanogaster
          GN=su(w[a]) PE=1 SV=3
          Length = 963

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 31 EKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR 79
          E  R  P + + + G  CKI  D   A   D    ++ W GD ++ IDR
Sbjct: 51 ENHRQPPLELL-VFGYACKIFRDDEKAREMDHGKQLIPWMGDVNLKIDR 98


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,307,130
Number of Sequences: 539616
Number of extensions: 1009093
Number of successful extensions: 3321
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3309
Number of HSP's gapped (non-prelim): 12
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)