Query psy6754
Match_columns 79
No_of_seqs 52 out of 54
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:35:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hgm_A HNRPF protein, heteroge 26.8 13 0.00046 23.7 0.0 13 62-74 10-22 (126)
2 3qwo_C Motavizumab epitope sca 26.0 20 0.00069 21.5 0.7 28 23-50 21-48 (57)
3 4a5x_A MITD1, MIT domain-conta 22.7 1.1E+02 0.0038 18.5 3.7 27 10-36 60-86 (86)
4 1xrs_A D-lysine 5,6-aminomutas 20.9 1.2E+02 0.0041 24.9 4.4 61 9-76 121-181 (516)
5 2aya_A DNA polymerase III subu 20.4 91 0.0031 19.8 3.1 23 16-38 104-126 (128)
6 1iq6_A (R)-hydratase, (R)-spec 18.0 29 0.001 20.7 0.2 23 39-61 25-47 (134)
7 2kzi_A Engineered protein, ZHE 17.2 39 0.0013 20.9 0.7 28 23-50 36-63 (70)
8 2v6x_A Vacuolar protein sortin 16.8 1.8E+02 0.006 17.0 3.8 26 10-35 57-82 (85)
9 4a1s_C RE60102P, INSC; cell cy 15.8 55 0.0019 18.2 1.0 9 68-76 18-26 (40)
10 1pve_A HHR23B, UV excision rep 15.5 50 0.0017 20.1 0.9 20 28-47 42-61 (72)
No 1
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=26.80 E-value=13 Score=23.75 Aligned_cols=13 Identities=8% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCceeccCCCCC
Q psy6754 62 SPSTMMSWQGDRD 74 (79)
Q Consensus 62 ~~~~liPWqGd~d 74 (79)
.+.+|+||+++-.
T Consensus 10 ~~~~~~~~~~~~~ 22 (126)
T 2hgm_A 10 HSSGLVPRGSHMA 22 (126)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3678999998754
No 2
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=25.98 E-value=20 Score=21.48 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcchhhhheecccee
Q psy6754 23 AERRRDYYEKIRADPTQFIQIHGRPCKI 50 (79)
Q Consensus 23 aErr~~~~e~~k~DP~q~Lqv~G~~cki 50 (79)
.|+|-.|...++.||.++=.|++.+-++
T Consensus 21 EeqRn~yI~slkdDPs~S~~v~~Ea~k~ 48 (57)
T 3qwo_C 21 EEQRSAFLSSINDDPSQSANLLAEAKKL 48 (57)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hhhccchHhhhccCcchhHHHHHhhhcc
Confidence 4788999999999999998887765443
No 3
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.72 E-value=1.1e+02 Score=18.47 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy6754 10 KKIRGLMVDYKRRAERRRDYYEKIRAD 36 (79)
Q Consensus 10 k~ir~~m~d~rkRaErr~~~~e~~k~D 36 (79)
..|+..+..|-.|||.=+.+..+.+.|
T Consensus 60 ~~lr~K~~eYl~RAE~LK~~l~~~k~~ 86 (86)
T 4a5x_A 60 CNLREKISKYMDRAENIKKYLDQEKED 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 468999999999999999998776643
No 4
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=20.89 E-value=1.2e+02 Score=24.90 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhhheeccceeeeChHHHhhhcCCCceeccCCCCCCc
Q psy6754 9 EKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIM 76 (79)
Q Consensus 9 Ek~ir~~m~d~rkRaErr~~~~e~~k~DP~q~Lqv~G~~cki~~D~~~a~a~e~~~~liPWqGd~dil 76 (79)
+..+...+..-+++-++|..|.+..-.-|..++-+.=-.-.||-|-..++|+ .|+|-.-|+
T Consensus 121 ~~~~~~~~~~i~~~r~~Re~~~~~~g~~~~p~iy~ivAtG~i~eDi~qa~aA-------A~~GAD~Ia 181 (516)
T 1xrs_A 121 LSMAKETVEKIKNNRSIRESRFEEYGDKSGPLLYVIVATGNIYEDITQAVAA-------AKQGADVIA 181 (516)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCSCHHHHHHHHHHH-------HHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecCchHHHHHHHHHH-------HHcCCCEEE
Confidence 4456666777778888889999999988888888887888899888777776 477765444
No 5
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=20.44 E-value=91 Score=19.83 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Q psy6754 16 MVDYKRRAERRRDYYEKIRADPT 38 (79)
Q Consensus 16 m~d~rkRaErr~~~~e~~k~DP~ 38 (79)
+...+.++||.+.=.+.+..||.
T Consensus 104 ~~~~~~~~er~~~A~~~i~~Dp~ 126 (128)
T 2aya_A 104 EWRQAIYEEKLAQARESIIADNN 126 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667888888888999999995
No 6
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=18.03 E-value=29 Score=20.66 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=15.2
Q ss_pred hhhhheeccceeeeChHHHhhhc
Q psy6754 39 QFIQIHGRPCKIHLDPSVALAAD 61 (79)
Q Consensus 39 q~Lqv~G~~cki~~D~~~a~a~e 61 (79)
.|-.+.|-.-.||.|++.|.++-
T Consensus 25 ~fa~~~gd~npiH~d~~~A~~~g 47 (134)
T 1iq6_A 25 AFAALSEDFNPLHLDPAFAATTA 47 (134)
T ss_dssp HHHHHHTCCCHHHHCHHHHTTST
T ss_pred HHHHhhCCCCccccCHHHHHhCC
Confidence 34455566677899998775543
No 7
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=17.21 E-value=39 Score=20.94 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcchhhhheecccee
Q psy6754 23 AERRRDYYEKIRADPTQFIQIHGRPCKI 50 (79)
Q Consensus 23 aErr~~~~e~~k~DP~q~Lqv~G~~cki 50 (79)
.|+|..|-..++.||.++=.|++.+-|+
T Consensus 36 EeQrngfI~slkddPs~Sqev~aEa~K~ 63 (70)
T 2kzi_A 36 NQQKRAFIRSLYDDPSQSANLLAEAKKL 63 (70)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hhhhhccccccccCccHHHHHHhhhccc
Confidence 4677899999999999998888766554
No 8
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=16.76 E-value=1.8e+02 Score=17.00 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy6754 10 KKIRGLMVDYKRRAERRRDYYEKIRA 35 (79)
Q Consensus 10 k~ir~~m~d~rkRaErr~~~~e~~k~ 35 (79)
..|+..+..|-.|||.-+.+..+.++
T Consensus 57 ~~l~~k~~eYl~RAE~Lk~~l~~~~~ 82 (85)
T 2v6x_A 57 DLIRAKFTEYLNRAEQLKKHLESEEA 82 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46899999999999999998776554
No 9
>4a1s_C RE60102P, INSC; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=15.83 E-value=55 Score=18.21 Aligned_cols=9 Identities=33% Similarity=1.195 Sum_probs=7.8
Q ss_pred ccCCCCCCc
Q psy6754 68 SWQGDRDIM 76 (79)
Q Consensus 68 PWqGd~dil 76 (79)
-|+++|.+|
T Consensus 18 RW~~e~EVM 26 (40)
T 4a1s_C 18 RWAGEPEVM 26 (40)
T ss_dssp TTCCCCCCC
T ss_pred cccCChhHH
Confidence 599999987
No 10
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=15.48 E-value=50 Score=20.11 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=16.6
Q ss_pred HHHHHHhCCcchhhhheecc
Q psy6754 28 DYYEKIRADPTQFIQIHGRP 47 (79)
Q Consensus 28 ~~~e~~k~DP~q~Lqv~G~~ 47 (79)
+.++-|..+|..||++...+
T Consensus 42 qL~q~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 42 QLLQQISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHCHHHHHHHHcCC
Confidence 45788999999999998654
Done!