Query psy6754
Match_columns 79
No_of_seqs 52 out of 54
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 17:35:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6754.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6754hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrsa_ c.1.19.4 (A:) D-lysine 30.2 30 0.0022 26.5 4.4 62 9-77 121-182 (516)
2 d1t6ua_ a.24.22.1 (A:) Nickel- 29.9 8.2 0.0006 24.0 1.0 12 46-58 4-15 (117)
3 d2pg3a1 c.26.2.1 (A:1-230) Que 27.0 10 0.00073 23.5 1.0 18 24-41 205-222 (230)
4 d1fc2c_ a.8.1.1 (C:) Immunoglo 23.1 20 0.0014 19.1 1.6 21 24-44 21-41 (44)
5 d1deeg_ a.8.1.1 (G:) Immunoglo 21.3 13 0.00098 20.4 0.7 28 23-50 17-44 (51)
6 d1lp1a_ a.8.1.1 (A:) Immunoglo 17.0 19 0.0014 20.0 0.7 28 23-50 21-48 (55)
7 d1kqha_ g.3.6.2 (A:) ACTX-HI:O 14.7 24 0.0017 18.0 0.7 8 66-73 9-16 (38)
8 d1khia1 b.34.5.2 (A:27-102) Wo 14.1 13 0.00095 21.8 -0.6 13 39-51 18-30 (76)
9 d1ta0a_ c.108.1.16 (A:) Carbox 14.0 39 0.0028 20.8 1.7 36 39-74 115-155 (181)
10 d1q6wa_ d.38.1.4 (A:) Monoamin 13.6 22 0.0016 20.7 0.4 29 40-68 31-59 (151)
No 1
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD {Clostridium sticklandii [TaxId: 1511]}
Probab=30.19 E-value=30 Score=26.49 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhhheeccceeeeChHHHhhhcCCCceeccCCCCCCcc
Q psy6754 9 EKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMI 77 (79)
Q Consensus 9 Ek~ir~~m~d~rkRaErr~~~~e~~k~DP~q~Lqv~G~~cki~~D~~~a~a~e~~~~liPWqGd~dilI 77 (79)
+..+...+..-+++.++|.+|.+..-.-|..++-|.=-.-.||-|--.++|+ .|+|-.-|++
T Consensus 121 ~~~~~~~i~~i~~~r~~Re~~~~~~g~~p~P~~YvIVAtG~i~eDi~qaraA-------A~~GAD~IaV 182 (516)
T d1xrsa_ 121 LSMAKETVEKIKNNRSIRESRFEEYGDKSGPLLYVIVATGNIYEDITQAVAA-------AKQGADVIAV 182 (516)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCSCHHHHHHHHHHH-------HHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEecCchHHHHHHHHHH-------HHcCCCEEEe
Confidence 4556666777778888899999999999999998888888999988877776 4777655443
No 2
>d1t6ua_ a.24.22.1 (A:) Nickel-containing superoxide dismutase, NiSOD {Streptomyces coelicolor [TaxId: 1902]}
Probab=29.91 E-value=8.2 Score=23.98 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=8.9
Q ss_pred ccceeeeChHHHh
Q psy6754 46 RPCKIHLDPSVAL 58 (79)
Q Consensus 46 ~~cki~~D~~~a~ 58 (79)
-||.|| ||+.++
T Consensus 4 IPCGIY-Dpa~a~ 15 (117)
T d1t6ua_ 4 LPCGVY-DPAQAR 15 (117)
T ss_dssp SCCCCC-CTHHHH
T ss_pred CCcccC-CHHHHH
Confidence 389999 776654
No 3
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=27.03 E-value=10 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCcchhh
Q psy6754 24 ERRRDYYEKIRADPTQFI 41 (79)
Q Consensus 24 Err~~~~e~~k~DP~q~L 41 (79)
+||+.|.+....|||-|-
T Consensus 205 ~R~~af~~~~~~d~t~y~ 222 (230)
T d2pg3a1 205 LRANGLAQYQKDAATVMA 222 (230)
T ss_dssp HHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHH
Confidence 789999999999999763
No 4
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=23.10 E-value=20 Score=19.13 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCcchhhhhe
Q psy6754 24 ERRRDYYEKIRADPTQFIQIH 44 (79)
Q Consensus 24 Err~~~~e~~k~DP~q~Lqv~ 44 (79)
|.|..|-...+.||.|+--|.
T Consensus 21 ~Qrn~fI~SLkDDPsqSan~L 41 (44)
T d1fc2c_ 21 EQRNGFIQSLKDDPSQSANLL 41 (44)
T ss_dssp HHHHHHHHHHHHCTTTTTCCC
T ss_pred HHHHHHHHHhccCchhhHHHH
Confidence 678889999999999876544
No 5
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=21.28 E-value=13 Score=20.38 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcchhhhheecccee
Q psy6754 23 AERRRDYYEKIRADPTQFIQIHGRPCKI 50 (79)
Q Consensus 23 aErr~~~~e~~k~DP~q~Lqv~G~~cki 50 (79)
.|.|..|-...+.||.|+--|.+.+-|+
T Consensus 17 eeQrn~fI~sLkddPs~sanvl~EakkL 44 (51)
T d1deeg_ 17 EAQRNGFIQSLKDDPSQSTNVLGEAKKL 44 (51)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHc
Confidence 4678899999999999998877665443
No 6
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=17.02 E-value=19 Score=19.96 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcchhhhheecccee
Q psy6754 23 AERRRDYYEKIRADPTQFIQIHGRPCKI 50 (79)
Q Consensus 23 aErr~~~~e~~k~DP~q~Lqv~G~~cki 50 (79)
.|.|..|-...+.||.|+--|.+.+-|+
T Consensus 21 ~~Qrn~fIqSLkDDPSqSan~LaEAkkl 48 (55)
T d1lp1a_ 21 DPQKKAFIFSLWDDPSQSANLLAEAKKL 48 (55)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHc
Confidence 4678899999999999987766554443
No 7
>d1kqha_ g.3.6.2 (A:) ACTX-HI:OB4219 {Funnel-web spider (Hadronyche infensa) [TaxId: 153481]}
Probab=14.75 E-value=24 Score=18.03 Aligned_cols=8 Identities=38% Similarity=0.983 Sum_probs=6.4
Q ss_pred eeccCCCC
Q psy6754 66 MMSWQGDR 73 (79)
Q Consensus 66 liPWqGd~ 73 (79)
--||.||.
T Consensus 9 cspwsgds 16 (38)
T d1kqha_ 9 CSPWSGDS 16 (38)
T ss_dssp ECSSSSCC
T ss_pred CCCCcCCc
Confidence 46999986
No 8
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Probab=14.05 E-value=13 Score=21.84 Aligned_cols=13 Identities=31% Similarity=1.014 Sum_probs=10.6
Q ss_pred hhhhheeccceee
Q psy6754 39 QFIQIHGRPCKIH 51 (79)
Q Consensus 39 q~Lqv~G~~cki~ 51 (79)
.|+-|-|++|||-
T Consensus 18 ~yv~i~g~PCkIv 30 (76)
T d1khia1 18 DILILQGRPCQVI 30 (76)
T ss_dssp CEEEETTEEEEEE
T ss_pred CEEEECCcccEEE
Confidence 4677889999985
No 9
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.98 E-value=39 Score=20.78 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=22.0
Q ss_pred hhhhheecc--ceeeeChHHHhhhcCCCcee---ccCCCCC
Q psy6754 39 QFIQIHGRP--CKIHLDPSVALAADSPSTMM---SWQGDRD 74 (79)
Q Consensus 39 q~Lqv~G~~--cki~~D~~~a~a~e~~~~li---PWqGd~d 74 (79)
.-|...|+. --|.+|+.......++.+.| ||.|+++
T Consensus 115 KdL~~l~~~l~~vvivDd~~~~~~~~~~N~I~I~~f~~~~~ 155 (181)
T d1ta0a_ 115 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMS 155 (181)
T ss_dssp CCGGGSCSCGGGEEEECSCGGGGTTCGGGBCCCCCCSSCTT
T ss_pred ccHhhcCCCHHHeEEEcCChhhhhcCccCeeEecCcCCCCC
Confidence 346667764 34788875554444454444 6998875
No 10
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.57 E-value=22 Score=20.68 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=19.3
Q ss_pred hhhheeccceeeeChHHHhhhcCCCceec
Q psy6754 40 FIQIHGRPCKIHLDPSVALAADSPSTMMS 68 (79)
Q Consensus 40 ~Lqv~G~~cki~~D~~~a~a~e~~~~liP 68 (79)
|..+.|-.-.||.|++-|.+..-+..+.|
T Consensus 31 fa~~~gd~~pih~d~~~A~~~g~~~~ia~ 59 (151)
T d1q6wa_ 31 FAYLTADFFPLHTDVEFAKKTIFGKPIAQ 59 (151)
T ss_dssp HHHHHTCCCHHHHCHHHHHTSTTSSCBCC
T ss_pred HHHHhCCCCceEEChhhhcccCCCcccch
Confidence 44456666679999998876655555443
Done!