RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6754
         (79 letters)



>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
           dimerization, SIG protein; HET: PTR; 2.60A {Mus
           musculus}
          Length = 224

 Score = 25.9 bits (56), Expect = 1.2
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 6   RKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIH---GRPCKIH------LDPSV 56
           +        LM+ YK + ER +   E+          +          H      L  +V
Sbjct: 32  KPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLSQAV 91

Query: 57  ALAADSPSTMMSWQ 70
            L  DS   M +W 
Sbjct: 92  MLGFDSHEAMCAWD 105


>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside
           6-adenyltransferase, PSI-2, structural genomics; 2.65A
           {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
          Length = 294

 Score = 25.7 bits (56), Expect = 1.8
 Identities = 6/28 (21%), Positives = 7/28 (25%)

Query: 17  VDYKRRAERRRDYYEKIRADPTQFIQIH 44
             Y    E    Y E I     +    H
Sbjct: 265 YKYPDYDEGITKYTEGIYCSVKEGHHHH 292


>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus
          furiosus} SCOP: d.58.59.1
          Length = 120

 Score = 24.7 bits (54), Expect = 2.5
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 26 RRDYYEKIRADPTQFIQIHGRPCKIH 51
           R++   +    T    I+G    I 
Sbjct: 73 DRNHVYDVIFSLTLVSDINGNKAIIK 98


>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA
          recognition motif, protein-protein complex, hydrolase;
          HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
          Length = 120

 Score = 24.3 bits (53), Expect = 4.0
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 26 RRDYYEKIRADPTQFIQIHGRPCKIH 51
           R+Y E +R       + +G+   I 
Sbjct: 73 DREYVEYLRFALMLVSEFNGKRLIIR 98


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 23.8 bits (50), Expect = 6.7
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 30/55 (54%)

Query: 7  KQE-KKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          KQ  KK++  +               K+ AD +               P++A+ A
Sbjct: 19 KQALKKLQASL---------------KLYADDSA--------------PALAIKA 44


>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
           complex; HET: DNA; 2.27A {Leishmania donovani}
          Length = 432

 Score = 23.8 bits (51), Expect = 9.1
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 1   MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRA 35
           MW ++     K   L      + +     +EK R 
Sbjct: 217 MWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARK 251


>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
           N-glucosyltransferase, UDP-glucose- dependent, plant
           glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
           thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
          Length = 480

 Score = 23.7 bits (52), Expect = 9.6
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 9   EKKIRGLMVDYKRRAERRR 27
            + ++GLM   + +  R +
Sbjct: 420 ARVVKGLMEGEEGKGVRNK 438


>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
           PSI-biology, NEW YORK structural genomi research
           consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
          Length = 450

 Score = 23.5 bits (50), Expect = 10.0
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 49  KIHLDPSVALAADSPSTMMSWQGDR 73
           K+HLD S+  A +  +   +    R
Sbjct: 127 KLHLDTSMGCAGEPTALPDATTAAR 151


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,321,027
Number of extensions: 66731
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 24
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)