RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6754
         (79 letters)



>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1)
          {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
          Length = 76

 Score = 22.4 bits (48), Expect = 5.2
 Identities = 4/11 (36%), Positives = 8/11 (72%)

Query: 40 FIQIHGRPCKI 50
           + + GRPC++
Sbjct: 19 ILILQGRPCQV 29


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 22.9 bits (49), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 48  CKIHLDPSVALAAD 61
            KIHLD S++ A D
Sbjct: 119 SKIHLDASMSCAGD 132


>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 118

 Score = 22.4 bits (48), Expect = 6.4
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 26 RRDYYEKIRADPTQFIQIHGRPCKIH 51
           R+Y E +R       + +G+   I 
Sbjct: 71 DREYVEYLRFALMLVSEFNGKRLIIR 96


>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 22.4 bits (47), Expect = 7.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 42 QIHGRPCKIHLDPSVALAADSPST 65
             G+   + L P+ AL    PS+
Sbjct: 64 SFRGKDLIVQLQPTDALLCSGPSS 87


>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
           [TaxId: 562]}
          Length = 161

 Score = 22.6 bits (48), Expect = 7.8
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 1   MWHEARKQEKKIRGLMVDYKRRAERRRDY 29
           ++ E  K E+ I   + +    A   +DY
Sbjct: 85  LFQETYKHEQLITQKINELAHAAMTNQDY 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 327,552
Number of extensions: 13035
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 17
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)