BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6756
(1055 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F NL+ H R HTGEKP+AC C F Q AHL H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F +L H R HTGEKP+ C C F Q+A+L H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F NL TH R HTGEKP+ C C F ++ L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 25/47 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK F S +L H R HTGEKP+ C C F K L +H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK F +L+ H R HTGEKP+ C C F ++ +L H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEK 669
Y+C CGK F L H R HTG+K
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
R Y+C CGK F S +L H R HTGEKP+ C C F Q++HL+ H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK F +L H RVHTG P
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
R Y C C ++F NL TH+R+HTG+KPF CR+C+ F Q+A L H+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF 680
+ ++C C + F +L H+R HTGEKPFAC +C F
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F S NL+ H R HTGEKP+ C C F Q + L KH
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH 51
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRN 696
Y+C CGK F S +L+ H R HTGEKP+ C C F + HL +H H+N
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ-RTHQN 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
R Y C C ++F NL TH+R+HTG+KPF CR+C+ F Q L +H+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF 680
+ ++C C + F L H+R HTGEKPFAC +C F
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 640 AREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
R Y C YCGK+F ++K H +HTGEKP C++C F Q ++L+ H
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ C CGK F S L THL +H+ +P+ C+ C F QK+ + KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTG 667
++C CGK F S NL TH R HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S NL H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQ----KAHLLKH 689
+ ++CT+ CGK+F + +NL+TH+R+HTG++P+ C C F Q K+H+L H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKHL 690
R + C CGK F S LK H VHTGEKPF C C F +L H+
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +E+ C +CG+ F S+NL H R HT E+P+ C +C F+++ HL H
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
R Y C C K F +L+ H +H+ EKPF C+ C F Q L H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 637 VGSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
V R Y C C ++F S L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
S+RE C+YCGK F ++ L HLR HTGEKP+ C C QK L HL
Sbjct: 3 SSRE--CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL 52
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S +L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S +L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ Y C CGK F S L H RVHTGEKP+ C C F Q + L+ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHT 666
+ Y+C CGK F + L H R+HT
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 53
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C ++F S L H+R+HTG+KPF CR+C+ F + HL H+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF----KQKAHLLKHL 690
++C C + F S +L TH+R HTGEKPFAC +C F ++K H HL
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 635 NNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+ GS+ ++C CGK F LKTH+R HTG KP+ C+ C + L KHL
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+ Y+C C S +L HLR+H+ E+PF C++C + + L HL
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ ++C C + F S +L TH+R HTGEKPFAC +C F + +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 669 KPFACRLCVAMFKQKAHLLKHL 690
KPF CR+C+ F + HL H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C C F NL +H VHTGEKP+ C +C A F + A+L H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
YRC CG QF NLKTH R+H+GEKP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACR--LCVAMFKQKAHLLKH 689
++C C ++F S +LKTH R HTGEKPF+CR C F + L++H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C + C ++F S LK H R HTG KPF C+ C F + HL H
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 637 VGSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKH 689
R + C Y C K++ +L+ H R HTGEKP+ C + C F + L +H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSV 693
R Y C CGK+F M +L H+++HTG KP+ C +C F + +H+ S
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSC 88
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
CGK F H+ +H G +P+ C +C FK K HL+ H+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+ C C + F +LK H R HT EKP+ C LC F ++ L++H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C YCGK FG+S L H R+HTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK+F S +L+TH RVHTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKHL 690
CGK F S NLK H R HTGEKPF C C F + KH+
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
C GK F + L H+RVHTGEKPF C C +F + +L H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 644 RCTYCGKQFGMSWNLKTHLRVHTGEK 669
+C CGKQF S NLK HLR+H+GEK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ YRC CGK F NL H R+HTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+ Y C + CG +F S L H R HTG +PF C+ C F + HL H+
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 86
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ C Y CGK + S +LK HLR HTGEKP+ C C F + L +H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+ Y C + CG +F S L H R HTG +PF C+ C F + HL H+
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ C Y CGK + S +LK HLR HTGEKP+ C C F + L +H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKHLCSVHRN 696
++CT+ C K + NLKTHLR HTGEKP+ C C F + KH H N
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKH 689
R + C++ CGK + S +LK H R HTGEKPF+C + C F + L +H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
C C K+F + LK H R HTGEKPF C C + +K +LL+H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
S + + C+ C + F L+ H+ HTGE P+ C C F QK L H+ +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ Y C++ CG + +W L+ HL HTGEKPF C+ C F HL +H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRN 696
S R + C +CGK + + L H R H G +P +C C F+ ++ + +HL VH+N
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL-KVHQN 57
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ + C CGK F +S L TH R+HTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
Y+CT+ C +F S L H R HTG KPF C +C F + HL H+
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 629 SSCTTSNNVGSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKA 684
SS ++ ++ R + C Y C K + S +LK HLR HTGEKP+ C C F +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 685 HLLKH 689
L +H
Sbjct: 62 ELTRH 66
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ + CT+CGK F NL TH R+HTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ Y C++ CG + +W L+ HL HTGEKPF C+ C F HL +H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
C CGK F ++L H H+GEKP++C +C FK+K + H+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGE--KPFACRLCVAMFKQKAHLLKHLCSVH 694
+ Y C CG +F + H+R H G KP+ C+ C F + HL H+ VH
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ YRC CGK F NL TH ++HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ ++C CGK F + +L +HLR+HTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 668 EKPFACRLCVAMFKQKAHLLKHL 690
EKPF C+ C F+Q HL HL
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHL 32
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
R Y C+ CGK F L H R+HTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK F + L H R+HTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + L H RVHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 299 NSPGHLTLKY-KLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKR 357
N G T+ K+ LADE+ +++ TD + C G+ AH+ +LA+ SP+
Sbjct: 144 NISGQNTMNMVKVPECRLADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSA 202
Query: 358 LLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPYKLHHPSLA 406
+ E ++ D++ K ++ F+YTG+A K+ LA
Sbjct: 203 MFEH-EMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLA 250
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 358 LLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPY-KLHHPSLADEVRQWFDSE 416
LL+EA L F ++ V + +GQ ++ K+ LADE+ +++
Sbjct: 117 LLDEANGLLPDDKLTLFCEVSVVQDSVNI----SGQNTMNMVKVPECRLADELGGLWENS 172
Query: 417 NCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTIL 476
TD + C G+ AH+ +LA+ SP+ + E ++ D++ K ++
Sbjct: 173 RFTDCCL-CVAGQEFQAHKAILAARSPVFSAMFEH-EMEESKKNRVEINDVEPEVFKEMM 230
Query: 477 HFLYTGQA 484
F+YTG+A
Sbjct: 231 CFIYTGKA 238
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTG 667
++CT+ CGK+F + +NLKTH+++HTG
Sbjct: 2 FQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 642 EYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+Y C CG + LK H+R HT +P+ C C FK K +L KH+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ YRC CGK F +L H+RVHTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ ++C CGK+F + L +H RVHTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
R Y CT CGK F NL H ++HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F NL TH +HTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
++C CGK+F + +L +H RVHTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
R +RC+ CGK F + N H R+HTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGE 668
S+ + Y CT CGK FG+ L H R HTGE
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CGK F + +L H RVHTGEKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
R ++C CGK F S +L H R+HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK + +NL H +VHTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 315 LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQF 374
LADE+ +++ TD + C G+ AH+ +LA+ SP+ + E ++
Sbjct: 12 LADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSAMFEH-EMEESKKNRVEI 69
Query: 375 PDIKVFHMKTILHFLYTGQASVPYKLHHPSLADEVRQWFDSENCTDISMICE 426
D++ K ++ F+YTG+A + +AD++ D + ++CE
Sbjct: 70 NDVEPEVFKEMMCFIYTGKAP-----NLDKMADDLLAAADKYALERLKVMCE 116
Score = 37.0 bits (84), Expect = 0.056, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 405 LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQF 464
LADE+ +++ TD + C G+ AH+ +LA+ SP+ + E ++
Sbjct: 12 LADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSAMFEH-EMEESKKNRVEI 69
Query: 465 PDIKVFHMKTILHFLYTGQA 484
D++ K ++ F+YTG+A
Sbjct: 70 NDVEPEVFKEMMCFIYTGKA 89
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTG 667
R Y C+ CGK+F + ++TH RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + L H ++HTGEKP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + +L H R+HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
S+ + Y C+ CGK F L H+R HTGEKP
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.059, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ + CT CGK F L H ++HTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.063, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGE 668
S+ + Y C CGK FG+ L H R+HTGE
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.0 bits (84), Expect = 0.064, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
R HTGEKP+AC C F+QK L H H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CGK F + +L TH +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y C CGK F L+ H R+HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.082, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ ++C CGK + +L H RVHTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 36.6 bits (83), Expect = 0.082, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVIS 699
+G++PF CR+C++ F KA+ +HL VH + +S
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHL-KVHTDTLS 35
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CGK F + +L TH +HTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ Y+C CGK F NL TH +HTGEK
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C+ CGK F L H ++HTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
R Y C+ CGK F L H R+H GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.099, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 638 GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
SA + C CG+ F + HLR+ + F C+ C A F L +H+ H
Sbjct: 24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
S + + C YC K F +L+ HLR+HT EK
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C+ CGK F +L H R+H+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F +L TH VHTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + +L H RVHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
++C C K F S +L H R+HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
S+ R Y C CGK F +L H R+HTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGE 668
+ Y C CGK F +S +L HLRVHT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ ++C CG+ F + +L H R+HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
R Y C CGK F +L H R HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y C CGK F + L +H R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK F + L H R+HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK FG + + H R+HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CGK F L H R HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + +L H R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y C CGK F +L H R+HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ Y+C CGK + NL H RVH GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ Y+C CGK + +L H RVHTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
S+ + Y+C CGK F +L H R+HTG P
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
R ++C CGK FG +L HLR+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F +S +L H VH+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C+ CGK F L H+R H+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ C+ C K F NL H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C+ CGK F L H R+HTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ ++C C ++F S +LKTH R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ + C CGK F L H R+HTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + +L H +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 EKPFACRLCVAMFKQKAHLLKH 689
EKP+ C C +F Q +HL++H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRH 31
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ Y C +C +QF L+ H+R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + +L H +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CGK F + +L H +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C C K F +L H R+HTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGE 668
S+ + Y C CGK F S L H RVHTGE
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
S+ + Y C CGK F L H R+HTGEK
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEKP 670
C CGK F S L H R+H+GEKP
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ ++C CGK F L H ++HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRV-HTGEK 669
+ Y+C YC K+F S NLKTH++ H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTI 719
R H+GEKP+ C +C A F Q + H+ H N + F+C C I
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE---------NVAKFHCPHCDTVI 55
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGE 668
+E++C +C K+F NLK HL++H +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CG +F LK+HLR+HTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ C CGK F + L H R+HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGE 668
S+ + Y CT CGK F + TH R+HTGE
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 633 TSNNVGSARE-YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+S + G+A + +RC C K F L +H +HTGEKP
Sbjct: 2 SSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEKP 670
C+ CGK F NL H ++HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C+ CGK F +L H R+HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y C C K F +L H RVH+GEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 658 LKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNV 697
L+ H R+H ++PF C C KQ ++L KH+ H ++
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 668 EKPFACRLCVAMFKQKAHLLKH 689
EKP+ C++C F QKAHL +H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH 31
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C C K F +L H + HTGEKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 315 LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLE-EARFPLGSPVYIQ 373
LADE+ +++ TD + C G+ AH+ +LA+ SP+ E E + V I
Sbjct: 21 LADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEIN 79
Query: 374 FPDIKVFHMKTILHFLYTGQA 394
+ +VF K F+YTG+A
Sbjct: 80 DVEPEVF--KEXXCFIYTGKA 98
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 405 LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLE-EARFPLGSPVYIQ 463
LADE+ +++ TD + C G+ AH+ +LA+ SP+ E E + V I
Sbjct: 21 LADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEIN 79
Query: 464 FPDIKVFHMKTILHFLYTGQA 484
+ +VF K F+YTG+A
Sbjct: 80 DVEPEVF--KEXXCFIYTGKA 98
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 644 RCTYCGKQFGMSWNLKTHLRVHTGEK 669
+C CGK F + +L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK F +L H H+GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CGK F + L H RVH+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
++Y C YC K F ++ H HTGE+ + C C F + H+ SVH
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C C + + +L+ H +H+ EK + CR C +F + KH
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH 69
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y C CGK F + L H R+H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 641 REYRCT--YCGKQFGMSWNLKTHLRVHTGEK 669
R + CT YCGK+F S L+ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 319 VRQWFDSEN-CTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDI 377
+ QW E C + G + L+ + S +I L RF P +++ D+
Sbjct: 127 LEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDL 186
Query: 378 KVFHMKTILHFLYTGQASVPYKLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLV 437
+K FL +VP LH P+LA +V ++ + + + E+L HR+
Sbjct: 187 AQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRF-------QKAFLTQLDELLTEHRMT 239
Query: 438 LASASP---LIKRLLEEARFPLGSP 459
A P L + L E G+P
Sbjct: 240 WDPAQPPRDLTEAFLAEMEKAKGNP 264
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK F + +L H +HTGEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
S+ + Y C CGK F L H VHTG KP
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSS 708
+GEKP++C C F K+ L+ VH+ V + V G SS
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLI-----VHKGVHTGVKPSGPSS 43
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C CGK F + NL H ++HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
S + Y+C C + NL HLR HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C+ CGK F S+ L H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 420 DISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFP-DIKVFHMKTILHF 478
D+S++ +G AHR VLA++S + L +R ++ P ++ + IL F
Sbjct: 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNSR-----SAVVELPAAVQPQSFQQILSF 88
Query: 479 LYTGQAYMGI 488
YTG+ M +
Sbjct: 89 CYTGRLSMNV 98
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 330 DISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFP-DIKVFHMKTILHF 388
D+S++ +G AHR VLA++S + L +R ++ P ++ + IL F
Sbjct: 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNSR-----SAVVELPAAVQPQSFQQILSF 88
Query: 389 LYTGQASV 396
YTG+ S+
Sbjct: 89 CYTGRLSM 96
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 638 GSARE--YRCTYCGKQFGMSWNLKTHLRVHTGE 668
GS+ E + C CGK F L H R+HTGE
Sbjct: 4 GSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y+C CG +F +L+ H+ +HTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 668 EKPFACRLCVAMFKQKAHLLKHL 690
EKP+ C C A F Q AHL H+
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHV 31
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
++C CGK F S +L H +H GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ Y C+ C K F + L H R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 638 GSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEK 669
G +++ C CGK +G + +L+ HLR HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGE 668
+ Y C C K F NL H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 640 AREYRCTYCGKQFGMSWNLKTHLR-VHTGEKPFACRLCVA 678
+ Y C CGK F +L H++ VHT E+P C++ V+
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 319 VRQWFDSEN-CTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDI 377
+ QW E C + G + L+ + S +I L RF P +++ D+
Sbjct: 127 LEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDL 186
Query: 378 KVFHMKTILHFLYTGQASVPYKLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLV 437
+K FL +VP H P+LA +V ++ + + + E+L HR+
Sbjct: 187 AQEGLKEESGFLREVLNAVPVDRHIPALAGKVLRF-------QKAFLTQLDELLTEHRMT 239
Query: 438 LASASP---LIKRLLEEARFPLGSP 459
A P L + L E G+P
Sbjct: 240 WDPAQPPRDLTEAFLAEMEKAKGNP 264
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 638 GSARE--YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
GS+ E + C+ C K F L H R+HTGE P
Sbjct: 4 GSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 666 TGEKPFACRLCVAMFKQKAHLLKH 689
+GEKPF C C F K++LL H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH 29
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C+ C K F L H R+HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 638 GSARE--YRCTYCGKQFGMSWNLKTHLRVHTGE 668
GS+ E Y C+ CGK F L +H R H GE
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEK 669
Y+C+ CGK F L+ H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ + C CGK F L+ H RVH GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
++C CGK F + +H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGE 668
+ Y C+ CGK F + L H R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ ++C CGK F L H VHT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|3U52|C Chain C, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|D Chain D, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 333
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 380 FHMKTILHFLYTGQASVPYKLHHPSLADEVRQWFDSENCTDISMICE 426
F + + + L G + +P + D++ QWF+S+ D+SM+ E
Sbjct: 212 FELTLVQNILIDG-------MMYPLVYDKMDQWFESQGAEDVSMLTE 251
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 310 LHHPSLADEVRQWFDSENCTDISMICE 336
+ +P + D++ QWF+S+ D+SM+ E
Sbjct: 225 MMYPLVYDKMDQWFESQGAEDVSMLTE 251
>pdb|2INP|C Chain C, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|D Chain D, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 328
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 380 FHMKTILHFLYTGQASVPYKLHHPSLADEVRQWFDSENCTDISMICE 426
F + + + L G + +P + D++ QWF+S+ D+SM+ E
Sbjct: 209 FELTLVQNILIDG-------MMYPLVYDKMDQWFESQGAEDVSMLTE 248
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 310 LHHPSLADEVRQWFDSENCTDISMICE 336
+ +P + D++ QWF+S+ D+SM+ E
Sbjct: 222 MMYPLVYDKMDQWFESQGAEDVSMLTE 248
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEK 669
Y+C+ CGK F L H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,585,548
Number of Sequences: 62578
Number of extensions: 1313307
Number of successful extensions: 2841
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2499
Number of HSP's gapped (non-prelim): 348
length of query: 1055
length of database: 14,973,337
effective HSP length: 109
effective length of query: 946
effective length of database: 8,152,335
effective search space: 7712108910
effective search space used: 7712108910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)