Query psy6756
Match_columns 1055
No_of_seqs 586 out of 4528
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:38:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607|consensus 100.0 2.8E-54 6E-59 466.9 16.0 242 794-1043 48-316 (318)
2 COG5058 LAG1 Protein transport 100.0 8.5E-52 1.8E-56 434.9 15.8 237 795-1042 117-392 (395)
3 KOG1608|consensus 100.0 6E-30 1.3E-34 267.0 10.9 185 792-983 81-266 (374)
4 smart00724 TLC TRAM, LAG1 and 99.9 5.2E-27 1.1E-31 249.6 7.1 173 833-1008 1-204 (205)
5 KOG2462|consensus 99.8 2.1E-21 4.5E-26 204.5 4.9 132 586-768 129-265 (279)
6 PF03798 TRAM_LAG1_CLN8: TLC d 99.8 2.1E-21 4.4E-26 204.7 3.4 151 834-990 1-159 (198)
7 KOG2462|consensus 99.8 5.2E-20 1.1E-24 194.0 5.6 120 563-722 128-256 (279)
8 KOG1074|consensus 99.7 8.1E-18 1.7E-22 197.4 3.9 51 641-691 604-654 (958)
9 KOG3608|consensus 99.6 3.1E-17 6.8E-22 175.8 -3.7 164 592-767 184-373 (467)
10 PHA02713 hypothetical protein; 99.5 3.7E-15 8E-20 181.3 5.4 95 308-405 5-100 (557)
11 KOG4441|consensus 99.5 5.9E-15 1.3E-19 179.1 5.9 102 304-407 12-113 (571)
12 KOG4350|consensus 99.4 1.5E-13 3.2E-18 150.2 4.0 85 312-398 28-112 (620)
13 PHA02790 Kelch-like protein; P 99.4 1.2E-13 2.7E-18 165.5 2.6 85 317-405 11-97 (480)
14 KOG3608|consensus 99.3 1.3E-13 2.9E-18 148.2 -3.4 170 565-759 207-390 (467)
15 PF00651 BTB: BTB/POZ domain; 99.3 3.8E-12 8.3E-17 121.3 6.6 79 319-397 1-79 (111)
16 KOG1074|consensus 99.3 1.1E-12 2.3E-17 155.0 2.1 78 642-719 353-431 (958)
17 KOG0783|consensus 99.3 9.1E-12 2E-16 146.1 8.9 169 313-483 539-774 (1267)
18 KOG3576|consensus 99.2 1.3E-12 2.7E-17 131.3 -0.7 118 638-767 113-233 (267)
19 KOG3623|consensus 99.2 6.9E-12 1.5E-16 145.4 2.3 76 636-722 888-963 (1007)
20 KOG3623|consensus 99.2 3.2E-12 7E-17 148.1 -1.7 77 641-728 239-329 (1007)
21 KOG3576|consensus 99.1 1.6E-11 3.5E-16 123.4 0.1 110 586-722 116-225 (267)
22 PHA03098 kelch-like protein; P 99.1 3.9E-11 8.4E-16 146.3 3.2 77 324-405 5-82 (534)
23 smart00225 BTB Broad-Complex, 98.9 9.6E-10 2.1E-14 99.4 4.1 68 330-399 1-68 (90)
24 KOG2838|consensus 98.7 2.3E-08 5.1E-13 105.2 6.6 176 312-488 114-330 (401)
25 PLN03086 PRLI-interacting fact 98.6 4.8E-08 1E-12 116.0 6.1 142 587-760 407-555 (567)
26 KOG2075|consensus 98.6 1E-07 2.2E-12 108.3 8.0 100 305-405 91-194 (521)
27 PLN03086 PRLI-interacting fact 98.6 3E-08 6.5E-13 117.7 4.0 136 566-727 408-559 (567)
28 KOG3993|consensus 98.4 4.3E-08 9.4E-13 108.9 -1.1 156 587-769 267-481 (500)
29 KOG4591|consensus 98.4 2.7E-07 6E-12 93.3 4.5 88 309-400 47-136 (280)
30 PHA00733 hypothetical protein 98.3 3.6E-07 7.7E-12 89.7 2.3 70 638-720 36-110 (128)
31 PHA00733 hypothetical protein 98.3 4E-07 8.7E-12 89.3 2.5 86 586-695 39-124 (128)
32 PHA02768 hypothetical protein; 98.2 3.8E-07 8.1E-12 74.6 1.3 39 671-722 6-44 (55)
33 PHA02768 hypothetical protein; 98.2 1.2E-06 2.6E-11 71.7 2.8 44 642-687 5-48 (55)
34 PHA02713 hypothetical protein; 98.0 1.9E-06 4E-11 105.6 1.7 101 401-505 8-108 (557)
35 KOG0783|consensus 97.9 9E-07 2E-11 105.2 -2.6 69 326-395 708-777 (1267)
36 PHA02790 Kelch-like protein; P 97.9 4.5E-06 9.6E-11 100.6 2.9 93 409-505 13-105 (480)
37 PF13465 zf-H2C2_2: Zinc-finge 97.9 5.4E-06 1.2E-10 58.0 2.1 25 657-681 1-25 (26)
38 KOG3993|consensus 97.9 2.6E-06 5.7E-11 95.1 0.3 101 566-666 268-380 (500)
39 KOG4441|consensus 97.8 4.6E-06 9.9E-11 102.0 0.7 95 406-504 24-118 (571)
40 PF13465 zf-H2C2_2: Zinc-finge 97.7 1.2E-05 2.5E-10 56.3 0.6 26 685-721 1-26 (26)
41 PF00651 BTB: BTB/POZ domain; 97.7 5.9E-05 1.3E-09 71.6 5.2 75 410-484 2-76 (111)
42 PHA00616 hypothetical protein 97.4 5.9E-05 1.3E-09 59.0 0.7 33 643-675 2-34 (44)
43 PHA00732 hypothetical protein 97.3 0.00014 3E-09 65.2 2.9 23 670-692 1-23 (79)
44 PHA00616 hypothetical protein 97.3 9.8E-05 2.1E-09 57.8 1.6 34 670-714 1-34 (44)
45 PHA00732 hypothetical protein 97.3 0.00015 3.4E-09 64.9 2.6 44 642-691 1-45 (79)
46 KOG1607|consensus 97.2 0.00011 2.5E-09 81.4 1.4 104 718-821 186-290 (318)
47 PF05605 zf-Di19: Drought indu 97.2 0.00038 8.2E-09 57.8 3.9 51 642-695 2-54 (54)
48 PHA03098 kelch-like protein; P 97.2 0.00025 5.4E-09 86.9 4.0 83 415-505 6-90 (534)
49 KOG4350|consensus 97.1 0.00023 5E-09 79.4 2.7 79 407-487 33-111 (620)
50 KOG4682|consensus 96.9 0.00044 9.5E-09 77.6 1.7 88 319-409 60-151 (488)
51 COG5189 SFP1 Putative transcri 96.8 0.00066 1.4E-08 73.6 2.6 55 668-722 347-411 (423)
52 smart00225 BTB Broad-Complex, 96.8 0.0028 6.2E-08 56.7 6.1 63 420-484 1-63 (90)
53 PF05605 zf-Di19: Drought indu 96.5 0.0033 7.1E-08 52.2 4.2 38 670-717 2-39 (54)
54 PF00096 zf-C2H2: Zinc finger, 96.4 0.0021 4.6E-08 43.3 2.2 22 671-692 1-22 (23)
55 PF13894 zf-C2H2_4: C2H2-type 96.3 0.003 6.4E-08 42.6 2.5 24 671-694 1-24 (24)
56 COG5189 SFP1 Putative transcri 96.2 0.0014 3.1E-08 71.1 0.6 53 639-691 346-419 (423)
57 PF00096 zf-C2H2: Zinc finger, 96.0 0.0025 5.5E-08 42.9 1.0 23 643-665 1-23 (23)
58 PF12756 zf-C2H2_2: C2H2 type 95.9 0.0057 1.2E-07 56.8 2.9 50 644-693 1-73 (100)
59 PF13912 zf-C2H2_6: C2H2-type 95.3 0.012 2.6E-07 41.3 2.2 25 670-694 1-25 (27)
60 KOG2838|consensus 95.2 0.023 5.1E-07 60.9 4.7 84 313-396 220-328 (401)
61 KOG4561|consensus 95.1 0.0099 2.1E-07 65.3 1.8 101 908-1009 138-268 (281)
62 KOG0511|consensus 95.0 0.013 2.9E-07 65.4 2.5 149 329-484 150-358 (516)
63 KOG2231|consensus 95.0 0.021 4.6E-07 69.5 4.2 45 643-691 116-170 (669)
64 KOG4474|consensus 95.0 0.051 1.1E-06 58.6 6.5 142 832-982 43-189 (253)
65 PF13894 zf-C2H2_4: C2H2-type 94.7 0.017 3.6E-07 38.8 1.4 24 643-666 1-24 (24)
66 PF12756 zf-C2H2_2: C2H2 type 94.4 0.02 4.4E-07 53.1 1.8 73 589-665 1-73 (100)
67 PF13912 zf-C2H2_6: C2H2-type 94.1 0.025 5.4E-07 39.7 1.3 26 642-667 1-26 (27)
68 PF09237 GAGA: GAGA factor; I 93.7 0.054 1.2E-06 43.6 2.6 30 666-695 20-49 (54)
69 COG5048 FOG: Zn-finger [Genera 93.3 0.031 6.7E-07 65.6 1.0 118 641-769 288-441 (467)
70 PRK04860 hypothetical protein; 93.3 0.049 1.1E-06 55.7 2.3 37 642-682 119-155 (160)
71 PF03931 Skp1_POZ: Skp1 family 93.3 0.28 6.1E-06 41.9 6.6 56 331-390 3-58 (62)
72 PF09237 GAGA: GAGA factor; I 93.0 0.07 1.5E-06 43.0 2.3 34 637-670 19-52 (54)
73 PRK04860 hypothetical protein; 92.8 0.062 1.3E-06 54.9 2.2 38 670-722 119-156 (160)
74 KOG2231|consensus 92.3 0.1 2.2E-06 63.9 3.4 116 643-774 100-240 (669)
75 PF13909 zf-H2C2_5: C2H2-type 92.1 0.13 2.7E-06 35.1 2.3 23 671-694 1-23 (24)
76 smart00355 ZnF_C2H2 zinc finge 91.8 0.11 2.5E-06 35.1 1.9 21 671-691 1-21 (26)
77 smart00355 ZnF_C2H2 zinc finge 91.7 0.13 2.8E-06 34.9 2.1 23 643-665 1-23 (26)
78 KOG1146|consensus 91.6 0.045 9.7E-07 70.2 -0.6 51 641-691 464-539 (1406)
79 PF12874 zf-met: Zinc-finger o 90.5 0.2 4.3E-06 34.3 2.1 21 671-691 1-21 (25)
80 KOG2075|consensus 89.8 0.44 9.6E-06 55.6 5.2 75 411-486 107-185 (521)
81 KOG4591|consensus 89.7 0.079 1.7E-06 54.6 -0.7 78 405-486 53-132 (280)
82 smart00512 Skp1 Found in Skp1 89.2 0.75 1.6E-05 43.5 5.6 62 330-392 3-64 (104)
83 PF12874 zf-met: Zinc-finger o 88.6 0.21 4.6E-06 34.2 1.0 23 643-665 1-23 (25)
84 COG5236 Uncharacterized conser 88.5 0.26 5.7E-06 54.6 2.1 34 642-677 151-186 (493)
85 KOG1146|consensus 88.5 0.28 6.2E-06 63.3 2.7 85 643-727 437-537 (1406)
86 PF13909 zf-H2C2_5: C2H2-type 86.3 0.36 7.7E-06 32.8 1.1 23 643-666 1-23 (24)
87 PF12171 zf-C2H2_jaz: Zinc-fin 85.9 0.45 9.7E-06 33.5 1.4 22 643-664 2-23 (27)
88 PF02214 BTB_2: BTB/POZ domain 85.3 0.58 1.2E-05 43.3 2.3 63 331-395 1-67 (94)
89 PF12171 zf-C2H2_jaz: Zinc-fin 83.7 0.38 8.3E-06 33.8 0.3 21 671-691 2-22 (27)
90 KOG2893|consensus 82.4 0.72 1.6E-05 48.8 1.8 44 726-769 13-57 (341)
91 PF13913 zf-C2HC_2: zinc-finge 81.7 1.1 2.4E-05 31.1 2.0 20 671-691 3-22 (25)
92 KOG2482|consensus 80.2 1.7 3.6E-05 48.6 3.7 52 732-783 317-374 (423)
93 PRK05978 hypothetical protein; 77.3 2.5 5.4E-05 42.6 3.7 33 711-761 35-67 (148)
94 COG5048 FOG: Zn-finger [Genera 76.0 1.5 3.3E-05 51.2 2.1 100 641-746 320-441 (467)
95 PF13913 zf-C2HC_2: zinc-finge 74.7 2.1 4.5E-05 29.7 1.6 21 643-664 3-23 (25)
96 COG1198 PriA Primosomal protei 74.1 2.5 5.5E-05 53.2 3.4 12 706-717 472-483 (730)
97 smart00451 ZnF_U1 U1-like zinc 73.7 2.5 5.5E-05 31.3 2.1 22 670-691 3-24 (35)
98 COG4049 Uncharacterized protei 73.2 1.8 3.8E-05 35.7 1.1 31 665-695 12-42 (65)
99 COG5236 Uncharacterized conser 72.3 2.7 5.9E-05 46.9 2.7 85 670-767 151-272 (493)
100 KOG0511|consensus 71.0 2.7 5.9E-05 47.7 2.4 66 331-399 295-363 (516)
101 KOG2716|consensus 70.3 7.8 0.00017 42.0 5.5 65 331-398 7-73 (230)
102 PF09986 DUF2225: Uncharacteri 66.5 1.9 4E-05 46.5 -0.1 24 871-894 156-179 (214)
103 KOG2893|consensus 66.2 1.6 3.5E-05 46.3 -0.6 49 644-696 12-60 (341)
104 KOG0320|consensus 65.0 5.3 0.00011 41.1 2.8 55 704-759 126-180 (187)
105 PF10571 UPF0547: Uncharacteri 64.9 3.6 7.8E-05 28.9 1.1 23 711-733 2-24 (26)
106 cd00350 rubredoxin_like Rubred 63.5 4.2 9.1E-05 30.2 1.4 24 643-678 2-25 (33)
107 PF09986 DUF2225: Uncharacteri 63.1 1.9 4.2E-05 46.4 -0.7 14 747-760 49-62 (214)
108 PRK00464 nrdR transcriptional 62.9 3.1 6.7E-05 42.4 0.7 13 710-722 29-41 (154)
109 KOG2785|consensus 61.6 7.3 0.00016 44.6 3.4 59 726-785 169-260 (390)
110 COG1198 PriA Primosomal protei 60.8 5.6 0.00012 50.3 2.6 25 932-956 592-616 (730)
111 PF06524 NOA36: NOA36 protein; 60.7 7.6 0.00016 42.1 3.2 14 706-719 206-219 (314)
112 smart00451 ZnF_U1 U1-like zinc 60.6 5.6 0.00012 29.4 1.6 23 642-664 3-25 (35)
113 PF09538 FYDLN_acid: Protein o 60.0 5 0.00011 38.4 1.6 9 644-652 11-19 (108)
114 TIGR00622 ssl1 transcription f 59.9 17 0.00037 34.9 5.0 88 643-746 2-104 (112)
115 PF02892 zf-BED: BED zinc fing 58.9 7.8 0.00017 30.5 2.3 27 668-694 14-44 (45)
116 KOG1987|consensus 57.9 2.6 5.7E-05 47.5 -0.9 56 338-394 109-164 (297)
117 TIGR00595 priA primosomal prot 56.6 7.6 0.00016 47.4 2.7 14 665-678 235-248 (505)
118 PRK14873 primosome assembly pr 56.2 7.3 0.00016 49.1 2.5 25 643-677 393-417 (665)
119 COG2888 Predicted Zn-ribbon RN 54.8 8.6 0.00019 32.4 1.9 10 708-717 49-58 (61)
120 PF09538 FYDLN_acid: Protein o 54.5 6.7 0.00015 37.5 1.4 12 671-682 10-21 (108)
121 KOG4173|consensus 53.4 4.4 9.6E-05 42.3 0.0 48 641-691 78-127 (253)
122 TIGR02098 MJ0042_CXXC MJ0042 f 52.3 12 0.00025 28.5 2.2 14 671-684 3-16 (38)
123 PRK04023 DNA polymerase II lar 52.1 14 0.0003 47.6 3.9 21 464-484 473-493 (1121)
124 COG1997 RPL43A Ribosomal prote 51.8 4.7 0.0001 36.6 -0.1 11 708-718 34-44 (89)
125 KOG2714|consensus 51.2 29 0.00062 40.6 6.0 65 331-396 13-79 (465)
126 smart00504 Ubox Modified RING 51.1 14 0.00031 31.0 2.8 47 710-759 2-48 (63)
127 KOG2807|consensus 51.1 34 0.00074 38.5 6.3 90 641-746 275-368 (378)
128 COG1592 Rubrerythrin [Energy p 51.0 9.8 0.00021 39.2 2.0 14 704-717 144-157 (166)
129 TIGR00373 conserved hypothetic 49.9 14 0.0003 37.9 3.0 22 665-686 104-125 (158)
130 PF09416 UPF1_Zn_bind: RNA hel 49.6 18 0.00039 36.7 3.6 50 669-718 13-69 (152)
131 smart00531 TFIIE Transcription 49.6 17 0.00038 36.7 3.6 17 668-684 97-113 (147)
132 PF13717 zinc_ribbon_4: zinc-r 49.4 17 0.00036 27.6 2.6 33 671-719 3-35 (36)
133 PF13719 zinc_ribbon_5: zinc-r 49.2 14 0.00031 28.1 2.2 14 706-719 22-35 (37)
134 PF04959 ARS2: Arsenite-resist 48.9 11 0.00024 40.5 2.1 28 668-695 75-102 (214)
135 TIGR02300 FYDLN_acid conserved 47.8 10 0.00023 36.9 1.6 16 668-683 24-39 (129)
136 COG5151 SSL1 RNA polymerase II 47.4 24 0.00052 39.2 4.4 90 641-746 307-411 (421)
137 PF08390 TRAM1: TRAM1-like pro 46.8 43 0.00094 29.0 5.1 33 790-822 28-60 (65)
138 cd00729 rubredoxin_SM Rubredox 46.3 12 0.00025 28.1 1.3 25 642-678 2-26 (34)
139 PRK06266 transcription initiat 45.5 17 0.00037 38.0 2.9 19 668-686 115-133 (178)
140 PF08390 TRAM1: TRAM1-like pro 44.9 37 0.0008 29.4 4.4 38 792-829 26-63 (65)
141 PRK04023 DNA polymerase II lar 44.7 17 0.00037 46.7 3.2 40 884-923 798-841 (1121)
142 COG4049 Uncharacterized protei 44.6 8.6 0.00019 31.8 0.4 29 636-664 11-39 (65)
143 COG1997 RPL43A Ribosomal prote 44.4 11 0.00024 34.3 1.1 32 669-721 34-65 (89)
144 PRK09678 DNA-binding transcrip 43.9 10 0.00023 33.5 0.8 9 644-652 3-11 (72)
145 PRK14559 putative protein seri 43.6 18 0.00039 45.3 3.1 22 712-733 30-51 (645)
146 TIGR00595 priA primosomal prot 43.3 13 0.00028 45.5 1.8 9 747-755 254-262 (505)
147 PF14353 CpXC: CpXC protein 42.7 19 0.0004 35.4 2.5 52 711-767 3-59 (128)
148 KOG0978|consensus 41.5 14 0.0003 46.1 1.7 55 709-765 643-697 (698)
149 COG1592 Rubrerythrin [Energy p 41.5 15 0.00033 37.8 1.7 24 642-678 134-157 (166)
150 PRK09678 DNA-binding transcrip 41.4 7.5 0.00016 34.4 -0.4 44 671-727 2-47 (72)
151 TIGR02300 FYDLN_acid conserved 41.2 15 0.00033 35.9 1.5 13 642-654 26-38 (129)
152 COG2888 Predicted Zn-ribbon RN 40.9 16 0.00035 30.8 1.4 32 723-754 27-58 (61)
153 KOG4173|consensus 40.9 8 0.00017 40.5 -0.4 52 644-695 108-171 (253)
154 PHA00626 hypothetical protein 40.8 14 0.0003 30.8 1.0 15 669-683 22-36 (59)
155 smart00614 ZnF_BED BED zinc fi 40.5 19 0.00042 29.2 1.9 24 671-694 19-47 (50)
156 PF05290 Baculo_IE-1: Baculovi 40.5 19 0.00041 35.4 2.1 56 703-761 74-136 (140)
157 KOG3473|consensus 40.4 55 0.0012 30.5 4.9 62 331-393 19-86 (112)
158 PRK05580 primosome assembly pr 40.2 15 0.00032 46.7 1.7 36 710-755 391-430 (679)
159 PRK14714 DNA polymerase II lar 40.2 22 0.00047 47.0 3.1 21 464-484 498-518 (1337)
160 smart00531 TFIIE Transcription 39.7 20 0.00044 36.2 2.3 38 640-681 97-134 (147)
161 KOG2186|consensus 39.6 17 0.00037 39.4 1.8 47 643-692 4-50 (276)
162 smart00154 ZnF_AN1 AN1-like Zi 39.0 18 0.00039 28.0 1.4 25 709-733 12-38 (39)
163 PRK00398 rpoP DNA-directed RNA 38.9 17 0.00037 29.0 1.3 10 709-718 21-30 (46)
164 PRK05580 primosome assembly pr 38.8 22 0.00048 45.1 3.0 26 643-678 391-416 (679)
165 KOG1044|consensus 38.3 16 0.00035 43.9 1.5 54 709-762 160-234 (670)
166 TIGR03826 YvyF flagellar opero 35.3 16 0.00036 36.4 0.8 21 711-731 5-26 (137)
167 KOG1280|consensus 35.2 25 0.00055 39.8 2.3 40 668-716 77-116 (381)
168 PRK14890 putative Zn-ribbon RN 34.9 24 0.00052 29.9 1.6 10 745-754 47-56 (59)
169 KOG0825|consensus 34.6 14 0.00029 45.9 0.1 30 705-734 211-241 (1134)
170 TIGR00373 conserved hypothetic 34.3 22 0.00047 36.5 1.5 34 639-681 106-139 (158)
171 KOG4682|consensus 34.1 15 0.00032 42.6 0.3 103 379-505 49-155 (488)
172 PF09723 Zn-ribbon_8: Zinc rib 34.1 16 0.00035 28.6 0.5 10 643-652 6-15 (42)
173 KOG2186|consensus 33.7 20 0.00043 39.0 1.2 45 670-727 3-47 (276)
174 COG5152 Uncharacterized conser 33.4 20 0.00043 37.4 1.1 47 706-755 193-239 (259)
175 TIGR02605 CxxC_CxxC_SSSS putat 33.2 16 0.00035 29.8 0.3 12 643-654 6-17 (52)
176 smart00724 TLC TRAM, LAG1 and 33.0 20 0.00043 37.9 1.1 97 724-820 105-204 (205)
177 PRK14890 putative Zn-ribbon RN 31.8 41 0.00088 28.5 2.4 10 642-651 25-34 (59)
178 smart00834 CxxC_CXXC_SSSS Puta 31.2 18 0.0004 27.7 0.3 29 643-678 6-34 (41)
179 PRK14873 primosome assembly pr 31.2 29 0.00062 43.9 2.2 9 747-755 423-431 (665)
180 PRK06266 transcription initiat 30.8 26 0.00057 36.7 1.5 33 640-681 115-147 (178)
181 COG0068 HypF Hydrogenase matur 30.5 13 0.00029 46.0 -0.8 21 910-930 476-496 (750)
182 smart00659 RPOLCX RNA polymera 30.5 34 0.00075 27.3 1.7 11 643-653 3-13 (44)
183 PF09332 Mcm10: Mcm10 replicat 30.4 14 0.00031 42.5 -0.6 16 641-656 251-266 (344)
184 PF14446 Prok-RING_1: Prokaryo 29.7 26 0.00056 29.2 0.9 24 710-733 6-31 (54)
185 KOG2593|consensus 29.6 35 0.00077 40.0 2.4 38 666-717 124-161 (436)
186 KOG2482|consensus 28.9 26 0.00056 39.6 1.1 39 657-695 130-170 (423)
187 KOG4694|consensus 28.7 2.3E+02 0.0051 28.6 7.4 17 911-927 41-60 (174)
188 PRK14714 DNA polymerase II lar 28.2 35 0.00075 45.2 2.2 42 711-759 681-722 (1337)
189 PF12773 DZR: Double zinc ribb 27.6 63 0.0014 26.0 2.9 23 708-730 28-50 (50)
190 PF09845 DUF2072: Zn-ribbon co 27.4 29 0.00062 34.3 1.0 15 670-684 1-15 (131)
191 KOG2071|consensus 27.4 39 0.00084 41.2 2.3 27 640-666 416-442 (579)
192 PF03604 DNA_RNApol_7kD: DNA d 27.3 39 0.00085 25.1 1.4 26 643-679 1-26 (32)
193 KOG2785|consensus 27.2 49 0.0011 38.2 2.9 52 641-692 165-242 (390)
194 KOG3733|consensus 27.2 9.4E+02 0.02 28.7 12.9 85 910-1009 412-504 (566)
195 PF03833 PolC_DP2: DNA polymer 27.0 21 0.00046 45.2 0.0 20 465-484 494-513 (900)
196 COG1327 Predicted transcriptio 26.8 26 0.00056 35.3 0.6 13 710-722 29-41 (156)
197 PF03931 Skp1_POZ: Skp1 family 26.6 2.3E+02 0.0049 24.0 6.3 57 421-481 3-59 (62)
198 COG5058 LAG1 Protein transport 26.3 1.1E+02 0.0024 34.6 5.4 100 723-825 262-372 (395)
199 PRK14559 putative protein seri 26.1 37 0.0008 42.6 1.9 40 710-760 16-55 (645)
200 PF09726 Macoilin: Transmembra 26.1 49 0.0011 42.0 3.0 33 767-799 54-86 (697)
201 KOG1724|consensus 24.9 1.5E+02 0.0032 30.7 5.6 59 331-391 7-65 (162)
202 KOG4124|consensus 24.8 15 0.00032 41.5 -1.6 17 706-722 395-411 (442)
203 PF04216 FdhE: Protein involve 24.3 21 0.00046 40.3 -0.6 28 639-680 194-221 (290)
204 TIGR00244 transcriptional regu 24.3 31 0.00067 34.8 0.6 12 711-722 30-41 (147)
205 PF12013 DUF3505: Protein of u 24.1 54 0.0012 31.2 2.3 24 671-694 81-108 (109)
206 KOG4124|consensus 23.3 25 0.00055 39.7 -0.2 21 747-767 399-419 (442)
207 COG1996 RPC10 DNA-directed RNA 23.3 45 0.00097 27.3 1.2 11 642-652 6-16 (49)
208 PF04641 Rtf2: Rtf2 RING-finge 23.2 57 0.0012 36.3 2.5 52 706-759 110-163 (260)
209 KOG2716|consensus 23.0 64 0.0014 35.1 2.7 80 421-502 7-87 (230)
210 PRK00464 nrdR transcriptional 22.8 48 0.001 33.9 1.7 18 670-687 28-45 (154)
211 PF13240 zinc_ribbon_2: zinc-r 22.8 45 0.00097 22.7 1.0 19 712-730 2-20 (23)
212 COG4530 Uncharacterized protei 22.6 41 0.00089 31.9 1.0 28 643-681 10-37 (129)
213 PF06524 NOA36: NOA36 protein; 22.5 56 0.0012 35.7 2.1 98 643-764 126-227 (314)
214 KOG1842|consensus 22.5 86 0.0019 37.0 3.7 55 929-983 300-370 (505)
215 COG5188 PRP9 Splicing factor 3 22.5 40 0.00086 38.2 1.0 89 641-742 237-394 (470)
216 PF09845 DUF2072: Zn-ribbon co 22.3 49 0.0011 32.7 1.5 15 642-656 1-15 (131)
217 PTZ00255 60S ribosomal protein 21.9 37 0.0008 31.4 0.6 14 707-720 52-65 (90)
218 COG2331 Uncharacterized protei 21.8 60 0.0013 28.8 1.8 34 708-759 11-46 (82)
219 PF09788 Tmemb_55A: Transmembr 21.7 1E+02 0.0022 33.9 3.9 13 708-720 156-168 (256)
220 TIGR01384 TFS_arch transcripti 21.7 60 0.0013 30.6 2.0 39 643-681 63-101 (104)
221 KOG2593|consensus 21.5 59 0.0013 38.2 2.2 37 639-678 125-161 (436)
222 TIGR00622 ssl1 transcription f 21.4 1.4E+02 0.003 28.9 4.2 48 618-666 58-105 (112)
223 PF15269 zf-C2H2_7: Zinc-finge 21.3 64 0.0014 25.7 1.6 21 671-691 21-41 (54)
224 COG0068 HypF Hydrogenase matur 21.1 72 0.0016 39.9 2.9 16 589-604 125-140 (750)
225 smart00734 ZnF_Rad18 Rad18-lik 20.9 74 0.0016 22.4 1.8 19 672-691 3-21 (26)
226 PF05443 ROS_MUCR: ROS/MUCR tr 20.7 57 0.0012 32.5 1.6 24 669-695 71-94 (132)
227 PF09788 Tmemb_55A: Transmembr 20.4 72 0.0016 35.0 2.4 32 640-679 63-94 (256)
228 COG4640 Predicted membrane pro 20.1 1.4E+02 0.0031 34.7 4.7 23 918-940 146-168 (465)
No 1
>KOG1607|consensus
Probab=100.00 E-value=2.8e-54 Score=466.86 Aligned_cols=242 Identities=34% Similarity=0.756 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcchhhhhccccccchhhhhhheeeeeeecCCccCCchhhhccCC
Q psy6756 794 FNGLLILLFILHLFWTRLIMKIAVQYFNAGEAQGKPSVLVKFCESSWRCIYYFFSFGFGLVCLWDKEWLWNMDTCWVNYP 873 (1055)
Q Consensus 794 ~~~ll~~l~Il~~~l~~lIl~~a~r~f~~k~~~~~~~~~~Kf~Es~w~~~~y~~~~~~g~~il~~~~w~~~~~~~w~~yP 873 (1055)
...++.++.++..+.+.+++....+......+...+.+.+||+||+|+++||++++++|+|+++++||++|++.+|.+||
T Consensus 48 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP 127 (318)
T KOG1607|consen 48 DICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYP 127 (318)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCC
Confidence 34444445555555555666666665554445555555599999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHhhcCCcccceEEEEecchhhHHHHHHHH
Q psy6756 874 HQSVPSDVWWYYMISLSFYYSLAVSQFFDVKRKDFWQMFLHHICTICLLSFSWICNLTRIGTLVLLVHDCADIFLEAAKM 953 (1055)
Q Consensus 874 ~~~~~~~~~~yYl~q~afy~~~~~~l~~~~~RkD~~~m~~HH~~Tl~Li~~SY~~n~~rvG~lvl~lHD~sDi~l~~aK~ 953 (1055)
+++++..+|+||++|+|||+++++.+++|.+||||++|++|||+|++||++||++||+|+|++||++||+||++||++|+
T Consensus 128 ~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~ 207 (318)
T KOG1607|consen 128 DQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKM 207 (318)
T ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchhhhhHHHHHHHHHHHhhcccceEEEeccc--hHH-------------------------HHHHHHHHHHHH
Q psy6756 954 AKYAKFDKTCEILFLAFTFLWLFTRNYIFPFWIIRRKK--SIE-------------------------IWSYLNLELLHQ 1006 (1055)
Q Consensus 954 ~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~ii~~~~--~~~-------------------------~W~~lI~~~~~~ 1006 (1055)
+||++.+.+++.+|++|+++|+++||++||+|+++++. ... ||+++|+||++|
T Consensus 208 ~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r 287 (318)
T KOG1607|consen 208 LNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYR 287 (318)
T ss_pred HchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999983 111 999999999999
Q ss_pred HHhcccccCCCCCCccCcCCCCCCCCCCCccccccCC
Q psy6756 1007 KVGDDLRSSSSGEEVGDDLRSSSSGEEVSDDSGKSAN 1043 (1055)
Q Consensus 1007 ~~~~~~~~~~~g~~~~~D~Rsd~e~~~~~~~~~~~~~ 1043 (1055)
++. +| ++.||+|||+|+||++|++.++++
T Consensus 288 ~~~-------~g-~~~eD~Rsd~~s~d~~~~~~~~~~ 316 (318)
T KOG1607|consen 288 VIK-------RG-MQGEDIRSDSESEDSSEEESKAEK 316 (318)
T ss_pred HHh-------cC-CccccccccccccccccccccccC
Confidence 997 57 799999999988887666655543
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.5e-52 Score=434.91 Aligned_cols=237 Identities=24% Similarity=0.470 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcchhhhhccccccchhhhhhheeeeeeecCC-ccCCchhhhccCC
Q psy6756 795 NGLLILLFILHLFWTRLIMKIAVQYFNAGEAQGKPSVLVKFCESSWRCIYYFFSFGFGLVCLWDKE-WLWNMDTCWVNYP 873 (1055)
Q Consensus 795 ~~ll~~l~Il~~~l~~lIl~~a~r~f~~k~~~~~~~~~~Kf~Es~w~~~~y~~~~~~g~~il~~~~-w~~~~~~~w~~yP 873 (1055)
+.+.+++.++..+++.++|+.++|.+...++...+++++||+||+|.++||++++.||+|+++++| |+++++.+|.+||
T Consensus 117 ~~F~lfy~ifftf~ref~md~virpf~l~~~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp 196 (395)
T COG5058 117 LCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYP 196 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCc
Confidence 334455666777888899999999999888888999999999999999999999999999999999 6669999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHH--HHHhhhhcccchhhHHHHHHHHHHHHHHHHhhcCCcccceEEEEecchhhHHHHHH
Q psy6756 874 HQSVPSDVWWYYMISLSFYYSL--AVSQFFDVKRKDFWQMFLHHICTICLLSFSWICNLTRIGTLVLLVHDCADIFLEAA 951 (1055)
Q Consensus 874 ~~~~~~~~~~yYl~q~afy~~~--~~~l~~~~~RkD~~~m~~HH~~Tl~Li~~SY~~n~~rvG~lvl~lHD~sDi~l~~a 951 (1055)
+...|..+|+||++|+|||+++ ++.|..|++||||+||+.|||||++||.+||.++|+|+|+.|+++||+||+||+++
T Consensus 197 ~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~s 276 (395)
T COG5058 197 VFYNPFLFKAFYLIQAAFWAQQACILVLQLEKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLS 276 (395)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHhhheeeecchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHH
Confidence 9999999999999999999988 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhhHHHHHHHHHHHhhcccceEEEecc-chHH-----------------------------------H
Q psy6756 952 KMAKYAKFDKTCEILFLAFTFLWLFTRNYIFPFWIIRRK-KSIE-----------------------------------I 995 (1055)
Q Consensus 952 K~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~ii~~~-~~~~-----------------------------------~ 995 (1055)
|++||++. .+++..|++|+.+|++.|+|++- .|++++ ..++ |
T Consensus 277 K~lnYl~~-~l~~~iF~iFv~~wIysRHyln~-kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniy 354 (395)
T COG5058 277 KTLNYLNS-VLATFIFGIFVFIWIYSRHYLNL-KILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIY 354 (395)
T ss_pred HHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHH
Confidence 99999988 89999999999999999999885 354443 1110 9
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCccCcCCCCCCCCCCCccccccC
Q psy6756 996 WSYLNLELLHQKVGDDLRSSSSGEEVGDDLRSSSSGEEVSDDSGKSA 1042 (1055)
Q Consensus 996 W~~lI~~~~~~~~~~~~~~~~~g~~~~~D~Rsd~e~~~~~~~~~~~~ 1042 (1055)
|++||+||+||++. .| +.+|+|||+|+||+++++.+++
T Consensus 355 Wl~lIvRvayRv~~-------~~--e~~D~RSd~e~ee~s~~~~s~~ 392 (395)
T COG5058 355 WLFLIVRVAYRVIW-------EG--ELKDERSDDESEEESDLESSED 392 (395)
T ss_pred HHHHHHHHHHHHhc-------cc--cccccccccccCChhhhhcccc
Confidence 99999999999997 44 8999999999988887665553
No 3
>KOG1608|consensus
Probab=99.96 E-value=6e-30 Score=267.00 Aligned_cols=185 Identities=17% Similarity=0.345 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcchhhhhccccccchhhhhhheeeeeeecCCccCCchhhhcc
Q psy6756 792 YIFNGLLILLFILHLFWTRLIMKIAVQYFNAGEAQGKPSVLVKFCESSWRCIYYFFSFGFGLVCLWDKEWLWNMDTCWVN 871 (1055)
Q Consensus 792 ~i~~~ll~~l~Il~~~l~~lIl~~a~r~f~~k~~~~~~~~~~Kf~Es~w~~~~y~~~~~~g~~il~~~~w~~~~~~~w~~ 871 (1055)
--++++++..+|+|.++++++++.+.+.++..| .+..||+||++..+||..+++||.||+..|+|+.|+..+|.|
T Consensus 81 ~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-----~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~~lW~~ 155 (374)
T KOG1608|consen 81 ATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-----VKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPTSLWEG 155 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----hhhhhhccCCeeeehhhHHhhhhheeeeecccccChHHHHhc
Confidence 356778888899999999999998887766544 789999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH-HHHHHHHHhhcCCcccceEEEEecchhhHHHHH
Q psy6756 872 YPHQSVPSDVWWYYMISLSFYYSLAVSQFFDVKRKDFWQMFLHHIC-TICLLSFSWICNLTRIGTLVLLVHDCADIFLEA 950 (1055)
Q Consensus 872 yP~~~~~~~~~~yYl~q~afy~~~~~~l~~~~~RkD~~~m~~HH~~-Tl~Li~~SY~~n~~rvG~lvl~lHD~sDi~l~~ 950 (1055)
|||..|++.+|+||+.|+|||+|.++++||++.|||.+...+-|++ .+++|+++|.+|+.|+|+++|.||++++.+.|+
T Consensus 156 yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYllnl~rlgLvLl~LhYftellfHi 235 (374)
T KOG1608|consen 156 YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLNLNRLGLVLLTLHYFTELLFHI 235 (374)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876666666 999999999999999999999999999999999
Q ss_pred HHHHhhhcccchhhhhHHHHHHHHHHHhhcccc
Q psy6756 951 AKMAKYAKFDKTCEILFLAFTFLWLFTRNYIFP 983 (1055)
Q Consensus 951 aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p 983 (1055)
++++.+.+.+ .+.+|.+|+++|++.|++..-
T Consensus 236 ~rlfyf~dek--~~k~fslwa~vF~l~Rl~tli 266 (374)
T KOG1608|consen 236 ARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLI 266 (374)
T ss_pred HHHheecccc--hhHHHHHHHHHHHHHHHHHHH
Confidence 9999997665 678999999999999998764
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.93 E-value=5.2e-27 Score=249.59 Aligned_cols=173 Identities=35% Similarity=0.613 Sum_probs=158.1
Q ss_pred hhhhccccccchhhhhhheeeeeeecCCccCCchhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHhh--hhcccchhhH
Q psy6756 833 VKFCESSWRCIYYFFSFGFGLVCLWDKEWLWNMDTCWVNYPHQSVPSDVWWYYMISLSFYYSLAVSQF--FDVKRKDFWQ 910 (1055)
Q Consensus 833 ~Kf~Es~w~~~~y~~~~~~g~~il~~~~w~~~~~~~w~~yP~~~~~~~~~~yYl~q~afy~~~~~~l~--~~~~RkD~~~ 910 (1055)
+|+.|+.|++++|+.++++|+++++.++|++|.. .++|.++.+...++||.+|+|||++.++.++ .+.+|||+++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~ 77 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKE 77 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 4899999999999999999999999999988887 7889999999999999999999999988775 5788999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccceEEEEecchhhHHHHHHHHHhhhccc--chhhhhHHHHHHHHHHHhhcccceEEEe
Q psy6756 911 MFLHHICTICLLSFSWICNLTRIGTLVLLVHDCADIFLEAAKMAKYAKFD--KTCEILFLAFTFLWLFTRNYIFPFWIIR 988 (1055)
Q Consensus 911 m~~HH~~Tl~Li~~SY~~n~~rvG~lvl~lHD~sDi~l~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~p~~ii~ 988 (1055)
|++||++|++++.+||..|++|+|.+++++||++|+||+++|+++|+|.+ ...+..|++|+++|+++|++++|+.+++
T Consensus 78 ~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~~ 157 (205)
T smart00724 78 MLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILT 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 6789999999999999999999975554
Q ss_pred cc---c---h-----H--H--------------HHHHHHHHHHHHHH
Q psy6756 989 RK---K---S-----I--E--------------IWSYLNLELLHQKV 1008 (1055)
Q Consensus 989 ~~---~---~-----~--~--------------~W~~lI~~~~~~~~ 1008 (1055)
.. . . + . ||+++|+|+++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 158 VTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 0 0 0 0 99999999999875
No 5
>KOG2462|consensus
Probab=99.83 E-value=2.1e-21 Score=204.51 Aligned_cols=132 Identities=20% Similarity=0.365 Sum_probs=118.5
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhhc
Q psy6756 586 ITALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 586 ~h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
..+.|.+||+.+.+..+|.+|.+.|.. ....+.+.|+.|+|.|.+-..|++|+++|
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~------------------------~~s~ka~~C~~C~K~YvSmpALkMHirTH 184 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRS------------------------LDSKKAFSCKYCGKVYVSMPALKMHIRTH 184 (279)
T ss_pred Cceeccccccccccccccchhhccccc------------------------ccccccccCCCCCceeeehHHHhhHhhcc
Confidence 348999999999999999999998822 12246689999999999999999999999
Q ss_pred cCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcccceecccchhccCHHHHHHHHHc
Q psy6756 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKF 745 (1055)
Q Consensus 666 ~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~ 745 (1055)
+ -+++|.+|||.|.+.=-|+-|+| +|||||||.|+.|+ |.|.++++|+.|+++
T Consensus 185 ~--l~c~C~iCGKaFSRPWLLQGHiR-----------THTGEKPF~C~hC~--------------kAFADRSNLRAHmQT 237 (279)
T KOG2462|consen 185 T--LPCECGICGKAFSRPWLLQGHIR-----------THTGEKPFSCPHCG--------------KAFADRSNLRAHMQT 237 (279)
T ss_pred C--CCcccccccccccchHHhhcccc-----------cccCCCCccCCccc--------------chhcchHHHHHHHHh
Confidence 8 78999999999999999999997 69999999999885 588899999999999
Q ss_pred C-----cccccchhhccCcccceecccc
Q psy6756 746 D-----KTCEILFLAFTFLWLFTRNYIF 768 (1055)
Q Consensus 746 h-----y~C~~Cg~~F~~~~~L~rHv~~ 768 (1055)
| |+|..|+|+|.+.+.|.+|..-
T Consensus 238 HS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 238 HSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred hcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 9 9999999999999999999863
No 6
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.82 E-value=2.1e-21 Score=204.71 Aligned_cols=151 Identities=28% Similarity=0.524 Sum_probs=135.0
Q ss_pred hhhccccccchhhhhhheeeeeeecCCccCCchhhhccCCCCCC---ChhhHHHHHHHHHHHHHHHHHhhh-hcccchhh
Q psy6756 834 KFCESSWRCIYYFFSFGFGLVCLWDKEWLWNMDTCWVNYPHQSV---PSDVWWYYMISLSFYYSLAVSQFF-DVKRKDFW 909 (1055)
Q Consensus 834 Kf~Es~w~~~~y~~~~~~g~~il~~~~w~~~~~~~w~~yP~~~~---~~~~~~yYl~q~afy~~~~~~l~~-~~~RkD~~ 909 (1055)
||+|++|.++++++++++|++++.+++ ++|.+||+... +...++++.+++|||++.++..++ +++++|++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~ 74 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFW 74 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 789999999999999999999999998 77777777655 448899999999999998888877 55567999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccceEEEEecchhhHHHHHHHHHhhh-cc-cchhhhhH--HHHHHHHHHHhhcccceE
Q psy6756 910 QMFLHHICTICLLSFSWICNLTRIGTLVLLVHDCADIFLEAAKMAKYA-KF-DKTCEILF--LAFTFLWLFTRNYIFPFW 985 (1055)
Q Consensus 910 ~m~~HH~~Tl~Li~~SY~~n~~rvG~lvl~lHD~sDi~l~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~~~p~~ 985 (1055)
+|++||++|++++.++|..|+.++|++++++||++|+||++.|+++++ +. +......+ ++|+++|+++|++++|++
T Consensus 75 ~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~ 154 (198)
T PF03798_consen 75 EMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYL 154 (198)
T ss_pred HhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 55 46677788 999999999999999975
Q ss_pred EEecc
Q psy6756 986 IIRRK 990 (1055)
Q Consensus 986 ii~~~ 990 (1055)
+++..
T Consensus 155 ~~~~~ 159 (198)
T PF03798_consen 155 IYWVY 159 (198)
T ss_pred HHHHH
Confidence 54443
No 7
>KOG2462|consensus
Probab=99.79 E-value=5.2e-20 Score=194.00 Aligned_cols=120 Identities=28% Similarity=0.456 Sum_probs=108.6
Q ss_pred CCCCCCccccccccCCCccc-ccccc--------cccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccc
Q psy6756 563 KAAPYNEVLSTAYSKSSKWK-HKDIT--------ALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTT 633 (1055)
Q Consensus 563 k~~~~C~~C~k~fss~~~l~-H~~~h--------~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~ 633 (1055)
.....|+.|++.+++..+|. |.+.| +.|+.|++.+...-.|..|.++|+
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------------- 185 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------------- 185 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC----------------------
Confidence 45677999999999999999 99988 889999999999999999999983
Q ss_pred cCcCCCCcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccC
Q psy6756 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCC 713 (1055)
Q Consensus 634 h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~ 713 (1055)
-+++|.+|||.|.+.--|+.|+|+|+|||||.|+.|+|.|..+++|+.||+ +|.+.|+|+|.
T Consensus 186 -------l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ-----------THS~~K~~qC~ 247 (279)
T KOG2462|consen 186 -------LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ-----------THSDVKKHQCP 247 (279)
T ss_pred -------CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHH-----------hhcCCccccCc
Confidence 357899999999999999999999999999999999999999999999998 57889999999
Q ss_pred CCCCCcCcc
Q psy6756 714 FCSMTIGTL 722 (1055)
Q Consensus 714 ~Cgk~F~t~ 722 (1055)
.|+|.|..+
T Consensus 248 ~C~KsFsl~ 256 (279)
T KOG2462|consen 248 RCGKSFALK 256 (279)
T ss_pred chhhHHHHH
Confidence 997655544
No 8
>KOG1074|consensus
Probab=99.69 E-value=8.1e-18 Score=197.41 Aligned_cols=51 Identities=33% Similarity=0.742 Sum_probs=49.2
Q ss_pred cccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHH
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r 691 (1055)
.+-+|-+|.|+..-++.|+.|.++|+|++||+|.+||+.|+++.+|+.||-
T Consensus 604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~ 654 (958)
T KOG1074|consen 604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMS 654 (958)
T ss_pred CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccc
Confidence 568899999999999999999999999999999999999999999999996
No 9
>KOG3608|consensus
Probab=99.60 E-value=3.1e-17 Score=175.79 Aligned_cols=164 Identities=19% Similarity=0.193 Sum_probs=146.3
Q ss_pred cccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcC---CCCcccccCCCCCccCChhhHhhhhhhccCC
Q psy6756 592 QLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNV---GSAREYRCTYCGKQFGMSWNLKTHLRVHTGE 668 (1055)
Q Consensus 592 ~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~---~~~k~y~C~~C~k~F~~~ssL~~H~~~H~ge 668 (1055)
-|.+.+.++..|..|.+.|++++...|..|+.-|..+..+-.|... ....+|+|..|.|.|.+...|+.|+..|-
T Consensus 184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv-- 261 (467)
T KOG3608|consen 184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV-- 261 (467)
T ss_pred hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--
Confidence 4777888899999999999999999999999999998888777633 34568999999999999999999999997
Q ss_pred CCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcc-cceec--------------ccchhc
Q psy6756 669 KPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTL-VLLVH--------------DCADIF 733 (1055)
Q Consensus 669 kpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~-~lLcH--------------~C~k~F 733 (1055)
.-|+|+.|+.+....++|.+||+..|+ ..|||+|+.|++.|.+. .|..| .|...|
T Consensus 262 n~ykCplCdmtc~~~ssL~~H~r~rHs----------~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~ 331 (467)
T KOG3608|consen 262 NCYKCPLCDMTCSSASSLTTHIRYRHS----------KDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSV 331 (467)
T ss_pred hcccccccccCCCChHHHHHHHHhhhc----------cCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHH
Confidence 579999999999999999999998775 68999999999999888 33333 599999
Q ss_pred cCHHHHHHHHHcC--------cccccchhhccCcccceeccc
Q psy6756 734 LEAAKMAKYAKFD--------KTCEILFLAFTFLWLFTRNYI 767 (1055)
Q Consensus 734 ~~~~~L~~H~r~h--------y~C~~Cg~~F~~~~~L~rHv~ 767 (1055)
.+...|++|.+.+ |.|..|++.|++-.+|.+|++
T Consensus 332 r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 332 RTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred HHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence 9999999999988 999999999999999999997
No 10
>PHA02713 hypothetical protein; Provisional
Probab=99.54 E-value=3.7e-15 Score=181.28 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=83.6
Q ss_pred eCCChhhHHHHHHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCC-CCeEEecCCCCHHHHHHHH
Q psy6756 308 YKLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLG-SPVYIQFPDIKVFHMKTIL 386 (1055)
Q Consensus 308 ~~~h~~~l~~~L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~-~~~~I~l~~v~~~~~~~lL 386 (1055)
..+|...+++.|++||+++.+|||+|.|++|+.|+|||+||||+|+||++||++ ++.+. .+.+|.|.++++++|+.||
T Consensus 5 ~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~~v~~~~~~~ll 83 (557)
T PHA02713 5 DIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQMFDKDAVKNIV 83 (557)
T ss_pred hhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEeccCCHHHHHHHH
Confidence 457999999999999999999999999944899999999999999999999986 67654 3578999999999999999
Q ss_pred HHhhcCCCcCCcccCCCCc
Q psy6756 387 HFLYTGQASVPYKLHHPSL 405 (1055)
Q Consensus 387 ~f~YTG~l~Ls~~nl~~~L 405 (1055)
+|+|||+ ++.+|+++.|
T Consensus 84 ~y~Yt~~--i~~~nv~~ll 100 (557)
T PHA02713 84 QYLYNRH--ISSMNVIDVL 100 (557)
T ss_pred HHhcCCC--CCHHHHHHHH
Confidence 9999998 4666666555
No 11
>KOG4441|consensus
Probab=99.52 E-value=5.9e-15 Score=179.05 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=94.8
Q ss_pred eEeeeCCChhhHHHHHHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHH
Q psy6756 304 LTLKYKLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMK 383 (1055)
Q Consensus 304 ~~l~~~~h~~~l~~~L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~ 383 (1055)
..+...+|...+++.|+.+|+++.+|||+|.+ ++++|+|||+||||+|+||++||++ ++.+..+.+|.+.++++.+|.
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v-~~~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~~v~~~~l~ 89 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLV-GDREFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLEGVDPETLE 89 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEE-CCeeechHHHHHHhccHHHHHHhcC-CcccccceEEEEecCCHHHHH
Confidence 34667789999999999999999999999999 5899999999999999999999997 788888899999999999999
Q ss_pred HHHHHhhcCCCcCCcccCCCCccc
Q psy6756 384 TILHFLYTGQASVPYKLHHPSLAD 407 (1055)
Q Consensus 384 ~lL~f~YTG~l~Ls~~nl~~~La~ 407 (1055)
.||+|+|||++.|+.+|+++.+.+
T Consensus 90 ~ll~y~Yt~~i~i~~~nVq~ll~a 113 (571)
T KOG4441|consen 90 LLLDYAYTGKLEISEDNVQELLEA 113 (571)
T ss_pred HHHHHhhcceEEechHhHHHHHHH
Confidence 999999999999999999988744
No 12
>KOG4350|consensus
Probab=99.39 E-value=1.5e-13 Score=150.24 Aligned_cols=85 Identities=21% Similarity=0.422 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhc
Q psy6756 312 HPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYT 391 (1055)
Q Consensus 312 ~~~l~~~L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YT 391 (1055)
+.++.+.+.+++-+++++||+|+|| ++.|+|||+||||||.|||+|+-+ +|.|.++..|.|.+...++|+++|.||||
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve-~~rfpAHRvILAaRs~yFRAlLYg-Gm~Es~q~~ipLq~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVE-DTRFPAHRVILAARSSYFRALLYG-GMQESHQQLIPLQETNSEAFRALLRYIYT 105 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEe-ccccchhhhhHHHHHHHHHHHHhh-hhhhhhhcccccccccHHHHHHHHHHHhh
Confidence 3456889999999999999999996 899999999999999999999976 88888889999999999999999999999
Q ss_pred CCCcCCc
Q psy6756 392 GQASVPY 398 (1055)
Q Consensus 392 G~l~Ls~ 398 (1055)
|++.+..
T Consensus 106 g~~~l~~ 112 (620)
T KOG4350|consen 106 GKIDLAG 112 (620)
T ss_pred cceeccc
Confidence 9996544
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=99.38 E-value=1.2e-13 Score=165.48 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=73.5
Q ss_pred HHHHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEec--CCCCHHHHHHHHHHhhcCCC
Q psy6756 317 DEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQF--PDIKVFHMKTILHFLYTGQA 394 (1055)
Q Consensus 317 ~~L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l--~~v~~~~~~~lL~f~YTG~l 394 (1055)
..+-+|+-++.+|||++++ |+.|+|||+||||+|+|||+||.+ ++.|.++ .|.+ .++++++|+.||+|||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQ-KYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhHHHHHhhhhhceEEEEc--CcEEeeehhhhhhcCHHHHHHhcC-Ccccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 4556778889999999998 889999999999999999999986 6766644 3443 49999999999999999999
Q ss_pred cCCcccCCCCc
Q psy6756 395 SVPYKLHHPSL 405 (1055)
Q Consensus 395 ~Ls~~nl~~~L 405 (1055)
.|+.+|+++.|
T Consensus 87 ~it~~nV~~ll 97 (480)
T PHA02790 87 YIDSHNVVNLL 97 (480)
T ss_pred EEecccHHHHH
Confidence 99999888666
No 14
>KOG3608|consensus
Probab=99.29 E-value=1.3e-13 Score=148.23 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=88.5
Q ss_pred CCCCccccccccCCCccc-ccc-------cccccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccC-
Q psy6756 565 APYNEVLSTAYSKSSKWK-HKD-------ITALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSN- 635 (1055)
Q Consensus 565 ~~~C~~C~k~fss~~~l~-H~~-------~h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~- 635 (1055)
...|+.|+..|..+..+- |.+ .++.|..|.|.|.+...|..|+..|. ..++|..|+..-...+++..|.
T Consensus 207 vvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r 284 (467)
T KOG3608|consen 207 VVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIR 284 (467)
T ss_pred EEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHH
Confidence 444555555555555443 321 22555555555555555555555442 2344555554444444444444
Q ss_pred -cCCCCcccccCCCCCccCChhhHhhhhhhccCCCCeecCc--CcccccChHHHHHHHHhhcccccccccCCCCCccccc
Q psy6756 636 -NVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNC 712 (1055)
Q Consensus 636 -~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~--Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C 712 (1055)
.+...++|+|..|++.+.+.+.|.+|..+|+ +..|+|.. |...|++...|++|++.+|.+ .++-+|.
T Consensus 285 ~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg--------~np~~Y~- 354 (467)
T KOG3608|consen 285 YRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEG--------NNPILYA- 354 (467)
T ss_pred hhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccC--------CCCCcee-
Confidence 3344455555555555555555555555444 33455544 555555555555555544421 1233333
Q ss_pred CCCCCCcCcccceecccchhccCHHHHHHHHHcC--cccccchhhccCc
Q psy6756 713 CFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFD--KTCEILFLAFTFL 759 (1055)
Q Consensus 713 ~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~h--y~C~~Cg~~F~~~ 759 (1055)
||.|++.|++-.+|..|++.. ++=+.=...|+.+
T Consensus 355 -------------CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk 390 (467)
T KOG3608|consen 355 -------------CHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYK 390 (467)
T ss_pred -------------eecchhhhccchhHHHHHHHhhcccCCCCCCceeee
Confidence 567778888888899998776 5555555555443
No 15
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.29 E-value=3.8e-12 Score=121.32 Aligned_cols=79 Identities=24% Similarity=0.528 Sum_probs=67.1
Q ss_pred HHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcCCCcCC
Q psy6756 319 VRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVP 397 (1055)
Q Consensus 319 L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG~l~Ls 397 (1055)
|+++++++.++||+|.+++|+.|+|||.||+++|+||+.||.+.+..+....+|.+.++++++|+.+|+|+|+|++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC
Confidence 5788999999999999943899999999999999999999987545545556899999999999999999999999776
No 16
>KOG1074|consensus
Probab=99.27 E-value=1.1e-12 Score=155.03 Aligned_cols=78 Identities=31% Similarity=0.604 Sum_probs=60.7
Q ss_pred ccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhccccccc-ccCCCCCcccccCCCCCCc
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISS-VNDDGNSSHFNCCFCSMTI 719 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~-~~~HtgeKpy~C~~Cgk~F 719 (1055)
+++|.+|.|.|...+.|+.|++.|+|++||+|.+||.+|+++.+|+.|..+||....-. ++-|.+..-+.|.+|.-++
T Consensus 353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~~i~st~~ 431 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQYVITSTGL 431 (958)
T ss_pred cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhcceeecccc
Confidence 47899999999999999999999999999999999999999999999999777643111 1124444444444444433
No 17
>KOG0783|consensus
Probab=99.26 E-value=9.1e-12 Score=146.12 Aligned_cols=169 Identities=20% Similarity=0.400 Sum_probs=118.4
Q ss_pred hhHHHHHHHHhhc----CCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCC---------C--CCCeEEecCCC
Q psy6756 313 PSLADEVRQWFDS----ENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFP---------L--GSPVYIQFPDI 377 (1055)
Q Consensus 313 ~~l~~~L~~l~~~----~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~---------~--~~~~~I~l~~v 377 (1055)
+++...+..|+.. +.+.||||.| |++.|+|||.||++||++||.||....-. + .....|..++|
T Consensus 539 s~fe~sf~kLl~e~~~~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i 617 (1267)
T KOG0783|consen 539 SNFEGSFPKLLSEENYKDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDI 617 (1267)
T ss_pred ccchhhhHHHhhccccccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccC
Confidence 3455566666644 4466899999 79999999999999999999999432111 0 11235668899
Q ss_pred CHHHHHHHHHHhhcCCCcCCcccCC----------CCccc----------------------------------------
Q psy6756 378 KVFHMKTILHFLYTGQASVPYKLHH----------PSLAD---------------------------------------- 407 (1055)
Q Consensus 378 ~~~~~~~lL~f~YTG~l~Ls~~nl~----------~~La~---------------------------------------- 407 (1055)
.+..|+.||+||||+.+--+|.... ++++.
T Consensus 618 ~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~~~~~~~~n~ia~~ 697 (1267)
T KOG0783|consen 618 PPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSRQPLLSLTNDIAQL 697 (1267)
T ss_pred CHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhccchhhcccHHHHH
Confidence 9999999999999997644432111 11111
Q ss_pred --cccccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhcc
Q psy6756 408 --EVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQ 483 (1055)
Q Consensus 408 --~L~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe 483 (1055)
....+-+.....|+.+.++.|+.+.||+++|.|+.+||..+|...+..+ +........++.+.|+.+|+|+|...
T Consensus 698 ~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~-sS~t~~~~p~~~e~m~ivLdylYs~d 774 (1267)
T KOG0783|consen 698 YNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMES-SSITVNLSPLTVEHMSIVLDYLYSDD 774 (1267)
T ss_pred hcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhh-ccceeecCcchHHHHHHHHHHHHccc
Confidence 0000112345567778887788899999999999999999998555442 12355556677999999999999443
No 18
>KOG3576|consensus
Probab=99.22 E-value=1.3e-12 Score=131.32 Aligned_cols=118 Identities=19% Similarity=0.348 Sum_probs=90.3
Q ss_pred CCCcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCC
Q psy6756 638 GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSM 717 (1055)
Q Consensus 638 ~~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk 717 (1055)
.+...|.|.+|+|.|..+..|.+|++-|...+.+-|..|||.|...-.|++|++ +|+|.+||+|..|+|
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~r-----------thtgvrpykc~~c~k 181 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTR-----------THTGVRPYKCSLCEK 181 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhc-----------cccCccccchhhhhH
Confidence 345679999999999999999999999999999999999999999999999998 689999999999987
Q ss_pred CcCcc-cceecccchhccCHHHHHHHHHcC--cccccchhhccCcccceeccc
Q psy6756 718 TIGTL-VLLVHDCADIFLEAAKMAKYAKFD--KTCEILFLAFTFLWLFTRNYI 767 (1055)
Q Consensus 718 ~F~t~-~lLcH~C~k~F~~~~~L~~H~r~h--y~C~~Cg~~F~~~~~L~rHv~ 767 (1055)
.|..+ ++..| |.|+-.......--+|.. |+|+.||.+-...-.+..|+-
T Consensus 182 aftqrcslesh-l~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~ 233 (267)
T KOG3576|consen 182 AFTQRCSLESH-LKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLK 233 (267)
T ss_pred HHHhhccHHHH-HHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHH
Confidence 66655 33222 222222111111111222 999999999888777777765
No 19
>KOG3623|consensus
Probab=99.18 E-value=6.9e-12 Score=145.43 Aligned_cols=76 Identities=28% Similarity=0.546 Sum_probs=69.6
Q ss_pred cCCCCcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCC
Q psy6756 636 NVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFC 715 (1055)
Q Consensus 636 ~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~C 715 (1055)
..+...+|.|..|+|.|...++|.+|.--|+|.+||+|.+|.|.|+.+.+|..|+| .|.|||||+|+.|
T Consensus 888 ~kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkR-----------LHSGEKPfQCdKC 956 (1007)
T KOG3623|consen 888 AKTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKR-----------LHSGEKPFQCDKC 956 (1007)
T ss_pred ccCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhh-----------hccCCCcchhhhh
Confidence 34566889999999999999999999999999999999999999999999999998 6789999999999
Q ss_pred CCCcCcc
Q psy6756 716 SMTIGTL 722 (1055)
Q Consensus 716 gk~F~t~ 722 (1055)
+|+|...
T Consensus 957 lKRFSHS 963 (1007)
T KOG3623|consen 957 LKRFSHS 963 (1007)
T ss_pred hhhcccc
Confidence 8877654
No 20
>KOG3623|consensus
Probab=99.15 E-value=3.2e-12 Score=148.12 Aligned_cols=77 Identities=26% Similarity=0.510 Sum_probs=68.3
Q ss_pred cccccCCCCCccCChhhHhhhhhhccC-------------CCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCC
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLRVHTG-------------EKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNS 707 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~~H~g-------------ekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~Htge 707 (1055)
..|.|..|..+|..+..|.+||.+|.. .+.|+|.+|||.|+.+.+|+.|+| ||.||
T Consensus 239 ~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlR-----------IHSGE 307 (1007)
T KOG3623|consen 239 PNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLR-----------IHSGE 307 (1007)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhhe-----------eecCC
Confidence 457899999999999999999998853 368999999999999999999997 78899
Q ss_pred cccccCCCCCCcCcc-cceecc
Q psy6756 708 SHFNCCFCSMTIGTL-VLLVHD 728 (1055)
Q Consensus 708 Kpy~C~~Cgk~F~t~-~lLcH~ 728 (1055)
|||+|+-|+|+|... +.-.|.
T Consensus 308 KPfeCpnCkKRFSHSGSySSHm 329 (1007)
T KOG3623|consen 308 KPFECPNCKKRFSHSGSYSSHM 329 (1007)
T ss_pred CCcCCcccccccccCCcccccc
Confidence 999999999999888 666663
No 21
>KOG3576|consensus
Probab=99.09 E-value=1.6e-11 Score=123.43 Aligned_cols=110 Identities=26% Similarity=0.424 Sum_probs=87.6
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhhc
Q psy6756 586 ITALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 586 ~h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
..+.|..|++.|.-..-|++|++-| ..-+.|-|..||+.|...-.|++|+++|
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch---------------------------~~vkr~lct~cgkgfndtfdlkrh~rth 168 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCH---------------------------SDVKRHLCTFCGKGFNDTFDLKRHTRTH 168 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhc---------------------------cHHHHHHHhhccCcccchhhhhhhhccc
Confidence 3477888888888877777777765 3346688999999999999999999999
Q ss_pred cCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcc
Q psy6756 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 666 ~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~ 722 (1055)
+|.+||+|..|+|.|+++-+|..|++.+|.-.....-..-.+|-|.|+.||.+-.+.
T Consensus 169 tgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~ 225 (267)
T KOG3576|consen 169 TGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERP 225 (267)
T ss_pred cCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCCh
Confidence 999999999999999999999999998886332211122346788899888655444
No 22
>PHA03098 kelch-like protein; Provisional
Probab=99.08 E-value=3.9e-11 Score=146.28 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=67.2
Q ss_pred hcCCccceEEEee-CCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcCCCcCCcccCC
Q psy6756 324 DSENCTDISMICE-RGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPYKLHH 402 (1055)
Q Consensus 324 ~~~~~~DVtl~ve-~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG~l~Ls~~nl~ 402 (1055)
.++.+|||+|.+. +|++|+|||+||||+|+||++||.+ ++. +..|.+.+ ++++|+.||+|||||++.++.+++.
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~-~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~ 79 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKN-NFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVK 79 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhC-CCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHH
Confidence 4889999999972 4999999999999999999999976 554 45788888 9999999999999999999888766
Q ss_pred CCc
Q psy6756 403 PSL 405 (1055)
Q Consensus 403 ~~L 405 (1055)
+.+
T Consensus 80 ~ll 82 (534)
T PHA03098 80 DIL 82 (534)
T ss_pred HHH
Confidence 555
No 23
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.90 E-value=9.6e-10 Score=99.37 Aligned_cols=68 Identities=31% Similarity=0.574 Sum_probs=59.0
Q ss_pred ceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcCCCcCCcc
Q psy6756 330 DISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPYK 399 (1055)
Q Consensus 330 DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG~l~Ls~~ 399 (1055)
||++.+ +|+.|++||.+|+++|+||++||.+ ...+.....|.+.++++.+|+.+|+|+|+|++.+...
T Consensus 1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~-~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~ 68 (90)
T smart00225 1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSG-DFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE 68 (90)
T ss_pred CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcC-CCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH
Confidence 789999 6999999999999999999999975 3332346688899999999999999999999976664
No 24
>KOG2838|consensus
Probab=98.69 E-value=2.3e-08 Score=105.17 Aligned_cols=176 Identities=22% Similarity=0.309 Sum_probs=111.8
Q ss_pred hhhHHHHHHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCC-eEEecCCCCHHHHHHHHHHhh
Q psy6756 312 HPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSP-VYIQFPDIKVFHMKTILHFLY 390 (1055)
Q Consensus 312 ~~~l~~~L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~-~~I~l~~v~~~~~~~lL~f~Y 390 (1055)
..++++++...++.....||-++. ....|+|||++||||+++|+.+......++... ..|..-+++-++|.++|+|+|
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiF-keTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIF-KETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeee-eeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 456888888888888889999999 588999999999999999999875433222111 244445788999999999999
Q ss_pred cCCCcCCcccCCC-Cc--------------ccccccccccccccc-ceeeecc--------------Ceeeeehhhhhhc
Q psy6756 391 TGQASVPYKLHHP-SL--------------ADEVRQWFDSENCTD-ISMICER--------------GEILHAHRLVLAS 440 (1055)
Q Consensus 391 TG~l~Ls~~nl~~-~L--------------a~~L~~Ll~~~~l~D-v~l~~e~--------------~~~~~AHk~vLsA 440 (1055)
||+.-...-.++. .+ ...+..+.+.....| +.+.... +..+++|+++.++
T Consensus 193 tgEfgmEd~~fqn~diL~QL~edFG~~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aa 272 (401)
T KOG2838|consen 193 TGEFGMEDLGFQNSDILEQLCEDFGCFKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAA 272 (401)
T ss_pred hcccchhhcCCchHHHHHHHHHhhCCchhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHh
Confidence 9988443222111 11 112222332222222 2221111 3458999999999
Q ss_pred cCHHHHHHhh-------hcCCCCC-CCc-eEECCCCCHH-HHHHHHHHHhhcccccce
Q psy6756 441 ASPLIKRLLE-------EARFPLG-SPV-YIQFPDIKVF-HMKTILHFLYTGQAYMGI 488 (1055)
Q Consensus 441 ~S~yFr~ll~-------e~~~~s~-~~~-~i~l~~is~~-~~~~lLefmYtGe~~m~i 488 (1055)
+|++|+.++. +.++... ++. ++.-.-|-+. .-..++.+|||+.+..++
T Consensus 273 RS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 273 RSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred hhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhh
Confidence 9999999875 1122111 122 3333334343 445679999999885544
No 25
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.59 E-value=4.8e-08 Score=115.96 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=94.4
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCccCCC--CCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhh
Q psy6756 587 TALAKQLDWTERNLNSLSGPGGGHTNHEHEDTN--STNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRV 664 (1055)
Q Consensus 587 h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~--~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~ 664 (1055)
...|..|.+.... ..+..|...+.- ....|. .|+..+... .. ++.+.|+.|++.|. ...|..|++.
T Consensus 407 ~V~C~NC~~~i~l-~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~r~-el--------~~H~~C~~Cgk~f~-~s~LekH~~~ 474 (567)
T PLN03086 407 TVECRNCKHYIPS-RSIALHEAYCSR-HNVVCPHDGCGIVLRVE-EA--------KNHVHCEKCGQAFQ-QGEMEKHMKV 474 (567)
T ss_pred eEECCCCCCccch-hHHHHHHhhCCC-cceeCCcccccceeecc-cc--------ccCccCCCCCCccc-hHHHHHHHHh
Confidence 3567777755443 334455533321 333454 366666322 11 23368999999996 6889999998
Q ss_pred ccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcccceecccchhc-cCHHHHHHHH
Q psy6756 665 HTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTLVLLVHDCADIF-LEAAKMAKYA 743 (1055)
Q Consensus 665 H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~~lLcH~C~k~F-~~~~~L~~H~ 743 (1055)
|+ +++.|+ ||+.+ .+..|..|+. .|.+++++.|+.|++.|..-.-. -.+ .....|..|+
T Consensus 475 ~H--kpv~Cp-Cg~~~-~R~~L~~H~~-----------thCp~Kpi~C~fC~~~v~~g~~~-----~d~~d~~s~Lt~HE 534 (567)
T PLN03086 475 FH--EPLQCP-CGVVL-EKEQMVQHQA-----------STCPLRLITCRFCGDMVQAGGSA-----MDVRDRLRGMSEHE 534 (567)
T ss_pred cC--CCccCC-CCCCc-chhHHHhhhh-----------ccCCCCceeCCCCCCccccCccc-----cchhhhhhhHHHHH
Confidence 75 889999 99755 6788999976 57789999999999877421000 000 0346788888
Q ss_pred HcC----cccccchhhccCcc
Q psy6756 744 KFD----KTCEILFLAFTFLW 760 (1055)
Q Consensus 744 r~h----y~C~~Cg~~F~~~~ 760 (1055)
..+ +.|..||+.|+.+-
T Consensus 535 ~~CG~rt~~C~~Cgk~Vrlrd 555 (567)
T PLN03086 535 SICGSRTAPCDSCGRSVMLKE 555 (567)
T ss_pred HhcCCcceEccccCCeeeehh
Confidence 877 89999999887654
No 26
>KOG2075|consensus
Probab=98.58 E-value=1e-07 Score=108.31 Aligned_cols=100 Identities=19% Similarity=0.367 Sum_probs=84.0
Q ss_pred EeeeCCChhhHHHHHHHHhhcCCccceEEEeeC----CeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHH
Q psy6756 305 TLKYKLHHPSLADEVRQWFDSENCTDISMICER----GEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVF 380 (1055)
Q Consensus 305 ~l~~~~h~~~l~~~L~~l~~~~~~~DVtl~ve~----g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~ 380 (1055)
-+.|...-.++..+...+.+++..+||.|+|++ .+.|+|||.|||..|++|.+||.+ ++.+....+|.++||++.
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g-~~a~~~s~ei~lpdvepa 169 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYG-GLAEDASLEIRLPDVEPA 169 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhcc-CcccccCceeecCCcChh
Confidence 345656667888899999999999999999962 257999999999999999999975 666555679999999999
Q ss_pred HHHHHHHHhhcCCCcCCcccCCCCc
Q psy6756 381 HMKTILHFLYTGQASVPYKLHHPSL 405 (1055)
Q Consensus 381 ~~~~lL~f~YTG~l~Ls~~nl~~~L 405 (1055)
+|..+|+|||++++.+..++....|
T Consensus 170 aFl~~L~flYsdev~~~~dtvi~tl 194 (521)
T KOG2075|consen 170 AFLAFLRFLYSDEVKLAADTVITTL 194 (521)
T ss_pred HhHHHHHHHhcchhhhhHHHHHHHH
Confidence 9999999999999977665555433
No 27
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.58 E-value=3e-08 Score=117.70 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=98.1
Q ss_pred CCCccccccccCCCcccccccc----ccccc--ccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcCCC
Q psy6756 566 PYNEVLSTAYSKSSKWKHKDIT----ALAKQ--LDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNVGS 639 (1055)
Q Consensus 566 ~~C~~C~k~fss~~~l~H~~~h----~~C~~--C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~~~ 639 (1055)
..|+.|........-..|.... ..|+. |+..+. ...+..| ..|..|+..+. ...+..|....
T Consensus 408 V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~~~- 475 (567)
T PLN03086 408 VECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMKVF- 475 (567)
T ss_pred EECCCCCCccchhHHHHHHhhCCCcceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHHhc-
Confidence 3477787665444332254322 45764 888774 3444444 47999999885 45566666433
Q ss_pred CcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccC----------hHHHHHHHHhhcccccccccCCCCCcc
Q psy6756 640 AREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQ----------KAHLLKHLCSVHRNVISSVNDDGNSSH 709 (1055)
Q Consensus 640 ~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~----------k~sL~~H~r~~H~~~~~~~~~HtgeKp 709 (1055)
.+++.|+ |++.+ .+..|..|+++|.+.+++.|++|++.|.. ...|..|+.. .|.++
T Consensus 476 Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~------------CG~rt 541 (567)
T PLN03086 476 HEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI------------CGSRT 541 (567)
T ss_pred CCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh------------cCCcc
Confidence 3889999 99765 67999999999999999999999999952 3578888862 48899
Q ss_pred cccCCCCCCcCcccceec
Q psy6756 710 FNCCFCSMTIGTLVLLVH 727 (1055)
Q Consensus 710 y~C~~Cgk~F~t~~lLcH 727 (1055)
+.|..||+.+..+.+.-|
T Consensus 542 ~~C~~Cgk~Vrlrdm~~H 559 (567)
T PLN03086 542 APCDSCGRSVMLKEMDIH 559 (567)
T ss_pred eEccccCCeeeehhHHHH
Confidence 999999998877754433
No 28
>KOG3993|consensus
Probab=98.39 E-value=4.3e-08 Score=108.89 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=105.5
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhhcc
Q psy6756 587 TALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHT 666 (1055)
Q Consensus 587 h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~ 666 (1055)
.+.|..|...|...-.|.+|.-...- .-.|+|+.|+|+|.-..+|..|.+.|.
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV---------------------------~vEYrCPEC~KVFsCPANLASHRRWHK 319 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIV---------------------------HVEYRCPECDKVFSCPANLASHRRWHK 319 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeE---------------------------EeeecCCcccccccCchhhhhhhcccC
Confidence 38899999888888777777643211 134888888888888888888888873
Q ss_pred C---------------------------------CCCeecCcCcccccChHHHHHHHHhhcccccccccCC--C----CC
Q psy6756 667 G---------------------------------EKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDD--G----NS 707 (1055)
Q Consensus 667 g---------------------------------ekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~H--t----ge 707 (1055)
. +.-|.|.+|+|.|.++..|+.|+.+||.......... . -.
T Consensus 320 PR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~ 399 (500)
T KOG3993|consen 320 PRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIP 399 (500)
T ss_pred CchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccc
Confidence 1 1248999999999999999999998887432221100 0 01
Q ss_pred cccccCCCCCCcCccc---------------ceecccchhccCHHHHHHHHHcC-----cccccchhhccCcccceeccc
Q psy6756 708 SHFNCCFCSMTIGTLV---------------LLVHDCADIFLEAAKMAKYAKFD-----KTCEILFLAFTFLWLFTRNYI 767 (1055)
Q Consensus 708 Kpy~C~~Cgk~F~t~~---------------lLcH~C~k~F~~~~~L~~H~r~h-----y~C~~Cg~~F~~~~~L~rHv~ 767 (1055)
--+-|+.|+-.+.... .++..|+.-+.++..=-.|.+.- |.|++|-.+|.++-+|.||+-
T Consensus 400 l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin 479 (500)
T KOG3993|consen 400 LMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHIN 479 (500)
T ss_pred ccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhh
Confidence 1245666665553221 11236666665555444444332 999999999999999999986
Q ss_pred cc
Q psy6756 768 FP 769 (1055)
Q Consensus 768 ~p 769 (1055)
..
T Consensus 480 ~~ 481 (500)
T KOG3993|consen 480 KC 481 (500)
T ss_pred hc
Confidence 43
No 29
>KOG4591|consensus
Probab=98.38 E-value=2.7e-07 Score=93.33 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=72.0
Q ss_pred CCChhhHHHHHHHHhhcCCccceEEEeeC--CeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHH
Q psy6756 309 KLHHPSLADEVRQWFDSENCTDISMICER--GEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTIL 386 (1055)
Q Consensus 309 ~~h~~~l~~~L~~l~~~~~~~DVtl~ve~--g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL 386 (1055)
+++.+.++.--..++++++++|++|.+.+ ++.++|||.||||||++.+ |.+ +.. ....+..+.|+++++|...|
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN-~~d-ekse~~~~dDad~Ea~~t~i 122 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FAN-GGD-EKSEELDLDDADFEAFHTAI 122 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hcc-CCC-cchhhhcccccCHHHHHHhh
Confidence 36788999999999999999999999931 4679999999999999887 443 322 22346778899999999999
Q ss_pred HHhhcCCCcCCccc
Q psy6756 387 HFLYTGQASVPYKL 400 (1055)
Q Consensus 387 ~f~YTG~l~Ls~~n 400 (1055)
++|||+++....++
T Consensus 123 RWIYTDEidfk~dD 136 (280)
T KOG4591|consen 123 RWIYTDEIDFKEDD 136 (280)
T ss_pred eeeeccccccccch
Confidence 99999999765544
No 30
>PHA00733 hypothetical protein
Probab=98.27 E-value=3.6e-07 Score=89.68 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=46.4
Q ss_pred CCCcccccCCCCCccCChhhHhhh--hh---hccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCccccc
Q psy6756 638 GSAREYRCTYCGKQFGMSWNLKTH--LR---VHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNC 712 (1055)
Q Consensus 638 ~~~k~y~C~~C~k~F~~~ssL~~H--~~---~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C 712 (1055)
...+.+.|..|++.|.....|..| +. .+.+.+||.|+.|++.|.+..+|.+|++. | +++|.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~-----------h--~~~~~C 102 (128)
T PHA00733 36 PEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY-----------T--EHSKVC 102 (128)
T ss_pred hhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc-----------C--CcCccC
Confidence 345677788888777776666655 21 23346788888888888888888888762 1 245777
Q ss_pred CCCCCCcC
Q psy6756 713 CFCSMTIG 720 (1055)
Q Consensus 713 ~~Cgk~F~ 720 (1055)
+.|++.|.
T Consensus 103 ~~CgK~F~ 110 (128)
T PHA00733 103 PVCGKEFR 110 (128)
T ss_pred CCCCCccC
Confidence 77655333
No 31
>PHA00733 hypothetical protein
Probab=98.26 E-value=4e-07 Score=89.30 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=67.5
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhhc
Q psy6756 586 ITALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 586 ~h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
....|..|...+.+...|..+.. +..+....+.++|.|+.|++.|.+..+|..|++.|
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~----------------------l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h 96 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDESSY----------------------LYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT 96 (128)
T ss_pred hhHHHHHHhhhccChhhhcchHH----------------------HHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC
Confidence 34677778877777665555421 11222334568899999999999999999999987
Q ss_pred cCCCCeecCcCcccccChHHHHHHHHhhcc
Q psy6756 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 666 ~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
+.+|.|+.|++.|....+|.+|+...|.
T Consensus 97 --~~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 97 --EHSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred --CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 3579999999999999999999998885
No 32
>PHA02768 hypothetical protein; Provisional
Probab=98.23 E-value=3.8e-07 Score=74.61 Aligned_cols=39 Identities=13% Similarity=0.452 Sum_probs=22.3
Q ss_pred eecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcc
Q psy6756 671 FACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~ 722 (1055)
|+|+.||+.|.+.++|..|+++ |+ ++|+|..|++.|.+.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~-----------H~--k~~kc~~C~k~f~~~ 44 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK-----------HN--TNLKLSNCKRISLRT 44 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh-----------cC--CcccCCcccceeccc
Confidence 5566666666666666666652 23 455666666666554
No 33
>PHA02768 hypothetical protein; Provisional
Probab=98.16 E-value=1.2e-06 Score=71.72 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=40.9
Q ss_pred ccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHH
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLL 687 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~ 687 (1055)
.|+|+.||+.|...++|..|+++|+ ++++|..|++.|.+++.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 4899999999999999999999999 8999999999999887663
No 34
>PHA02713 hypothetical protein; Provisional
Probab=98.01 E-value=1.9e-06 Score=105.57 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCCCccccccccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHh
Q psy6756 401 HHPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLY 480 (1055)
Q Consensus 401 l~~~La~~L~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmY 480 (1055)
+...+...|..++....++|+++.++.++.|++||++|+|+|+||+++|......+.....+.+.+++.+.++.+++|+|
T Consensus 8 h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Y 87 (557)
T PHA02713 8 HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLY 87 (557)
T ss_pred hhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhc
Confidence 33445567888899999999999985478999999999999999999997654321123467789999999999999999
Q ss_pred hcccccceeeeeccCccCccccCCC
Q psy6756 481 TGQAYMGIVRTVLDGFWNPNIWLPP 505 (1055)
Q Consensus 481 tGe~~m~i~q~~l~~fl~~a~~Lp~ 505 (1055)
||++. .+....++.++..|+.
T Consensus 88 t~~i~----~~nv~~ll~aA~~lqi 108 (557)
T PHA02713 88 NRHIS----SMNVIDVLKCADYLLI 108 (557)
T ss_pred CCCCC----HHHHHHHHHHHHHHCH
Confidence 99742 3344455555555553
No 35
>KOG0783|consensus
Probab=97.94 E-value=9e-07 Score=105.15 Aligned_cols=69 Identities=20% Similarity=0.405 Sum_probs=56.7
Q ss_pred CCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhh-cCCCc
Q psy6756 326 ENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLY-TGQAS 395 (1055)
Q Consensus 326 ~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~Y-TG~l~ 395 (1055)
+..-|+.+.+.||+.|+|||++|+||++||..||..-.+ |...+.+.+..+..+.|+.+|+|+| +.++.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~-E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~ 777 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWM-ESSSITVNLSPLTVEHMSIVLDYLYSDDKVE 777 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHh-hhccceeecCcchHHHHHHHHHHHHccchHH
Confidence 455577777778999999999999999999999976343 4556677777888999999999999 55553
No 36
>PHA02790 Kelch-like protein; Provisional
Probab=97.93 E-value=4.5e-06 Score=100.62 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=71.5
Q ss_pred ccccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhcccccce
Q psy6756 409 VRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAYMGI 488 (1055)
Q Consensus 409 L~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~~m~i 488 (1055)
+..+.....++|+.++. |+.|++||+||+|||+||+++|...-.++.+...+...+++.+.++.+++|+|||++ .+
T Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l--~i 88 (480)
T PHA02790 13 ILALSMTKKFKTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKV--YI 88 (480)
T ss_pred HHHHHhhhhhceEEEEc--CcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeE--EE
Confidence 34456677899998887 689999999999999999999986654432222222248999999999999999999 55
Q ss_pred eeeeccCccCccccCCC
Q psy6756 489 VRTVLDGFWNPNIWLPP 505 (1055)
Q Consensus 489 ~q~~l~~fl~~a~~Lp~ 505 (1055)
..+....++.++..||.
T Consensus 89 t~~nV~~ll~aA~~Lqi 105 (480)
T PHA02790 89 DSHNVVNLLRASILTSV 105 (480)
T ss_pred ecccHHHHHHHHHHhCh
Confidence 56666777777777664
No 37
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.92 E-value=5.4e-06 Score=58.00 Aligned_cols=25 Identities=52% Similarity=1.093 Sum_probs=17.9
Q ss_pred hHhhhhhhccCCCCeecCcCccccc
Q psy6756 657 NLKTHLRVHTGEKPFACRLCVAMFK 681 (1055)
Q Consensus 657 sL~~H~~~H~gekpf~C~~Cgk~F~ 681 (1055)
+|.+|+++|++++||+|++|++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 4667777777777777777777765
No 38
>KOG3993|consensus
Probab=97.90 E-value=2.6e-06 Score=95.05 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=67.5
Q ss_pred CCCccccccccCCCccc-cc-----ccccccccccccccccCCCCCCCCCCCCCCccC--CCCCcc-cccCcc---cccc
Q psy6756 566 PYNEVLSTAYSKSSKWK-HK-----DITALAKQLDWTERNLNSLSGPGGGHTNHEHED--TNSTNE-DMISKS---SCTT 633 (1055)
Q Consensus 566 ~~C~~C~k~fss~~~l~-H~-----~~h~~C~~C~k~f~~~~~L~~H~~~h~~e~~~~--c~~c~~-~~~~~s---~l~~ 633 (1055)
.-|..|...|.+.-.|. |. .+.|+|.+|+|.|+-..+|..|.++|.....-. -..-.+ ...... +...
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r 347 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER 347 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence 44889998888887777 65 234999999999999999999999994422211 000000 000000 0000
Q ss_pred cCcCCCCcccccCCCCCccCChhhHhhhhhhcc
Q psy6756 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHT 666 (1055)
Q Consensus 634 h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~ 666 (1055)
......+..|.|+.|++.|.++..|++|+.+|.
T Consensus 348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred cCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence 111234458999999999999999999988774
No 39
>KOG4441|consensus
Probab=97.83 E-value=4.6e-06 Score=102.05 Aligned_cols=95 Identities=17% Similarity=0.296 Sum_probs=77.4
Q ss_pred cccccccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhcccc
Q psy6756 406 ADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAY 485 (1055)
Q Consensus 406 a~~L~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~~ 485 (1055)
...++.+++...++|+.+.++ ++.+.|||.||+|+|+||+++|.....+ .....+.+.+++++.++.+++|+|+|++
T Consensus 24 l~~l~~lr~~~~lcDv~L~v~-~~~~~aHR~VLAa~S~YFraMFt~~l~e-~~~~~i~l~~v~~~~l~~ll~y~Yt~~i- 100 (571)
T KOG4441|consen 24 LQGLNELREEGLLCDVTLLVG-DREFPAHRVVLAACSPYFRAMFTSGLKE-SKQKEINLEGVDPETLELLLDYAYTGKL- 100 (571)
T ss_pred HHHHHHHHHhCCCceEEEEEC-CeeechHHHHHHhccHHHHHHhcCCccc-ccceEEEEecCCHHHHHHHHHHhhcceE-
Confidence 446777889999999999997 7999999999999999999999865544 2355777888999999999999999999
Q ss_pred cceeeeeccCccCccccCC
Q psy6756 486 MGIVRTVLDGFWNPNIWLP 504 (1055)
Q Consensus 486 m~i~q~~l~~fl~~a~~Lp 504 (1055)
.+.++....++.++..+|
T Consensus 101 -~i~~~nVq~ll~aA~~lQ 118 (571)
T KOG4441|consen 101 -EISEDNVQELLEAASLLQ 118 (571)
T ss_pred -EechHhHHHHHHHHHHhh
Confidence 555555555666665555
No 40
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.68 E-value=1.2e-05 Score=56.29 Aligned_cols=26 Identities=15% Similarity=0.571 Sum_probs=22.2
Q ss_pred HHHHHHHhhcccccccccCCCCCcccccCCCCCCcCc
Q psy6756 685 HLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGT 721 (1055)
Q Consensus 685 sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t 721 (1055)
+|.+|++ +|+|+|||+|+.|++.|.+
T Consensus 1 ~l~~H~~-----------~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMR-----------THTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHH-----------HHSSSSSEEESSSSEEESS
T ss_pred CHHHHhh-----------hcCCCCCCCCCCCcCeeCc
Confidence 5788988 4679999999999999864
No 41
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.65 E-value=5.9e-05 Score=71.64 Aligned_cols=75 Identities=25% Similarity=0.538 Sum_probs=59.8
Q ss_pred cccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhccc
Q psy6756 410 RQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQA 484 (1055)
Q Consensus 410 ~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~ 484 (1055)
+++.+...++|+++.++.+..+.+|+.+|+++|+||+.++............+.+.+++++.+..+++|+|+|+.
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~ 76 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEI 76 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcc
Confidence 445677789999999954799999999999999999999988732212234677899999999999999999988
No 42
>PHA00616 hypothetical protein
Probab=97.35 E-value=5.9e-05 Score=58.99 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=17.5
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRL 675 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~ 675 (1055)
|+|+.||+.|...++|.+|++.|++++++.|+.
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 455555555555555555555555555555543
No 43
>PHA00732 hypothetical protein
Probab=97.33 E-value=0.00014 Score=65.17 Aligned_cols=23 Identities=22% Similarity=0.285 Sum_probs=14.5
Q ss_pred CeecCcCcccccChHHHHHHHHh
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLCS 692 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r~ 692 (1055)
||.|+.|++.|.+..+|++|++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhc
Confidence 35666666666666666666653
No 44
>PHA00616 hypothetical protein
Probab=97.33 E-value=9.8e-05 Score=57.78 Aligned_cols=34 Identities=26% Similarity=0.654 Sum_probs=29.5
Q ss_pred CeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCC
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCF 714 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~ 714 (1055)
||+|+.||+.|.+++.|.+|++.+| |++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~h-----------g~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVH-----------KQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhc-----------CCCccceeE
Confidence 6899999999999999999999655 578888764
No 45
>PHA00732 hypothetical protein
Probab=97.28 E-value=0.00015 Score=64.86 Aligned_cols=44 Identities=30% Similarity=0.631 Sum_probs=38.8
Q ss_pred ccccCCCCCccCChhhHhhhhhh-ccCCCCeecCcCcccccChHHHHHHHH
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRV-HTGEKPFACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~-H~gekpf~C~~Cgk~F~~k~sL~~H~r 691 (1055)
+|.|+.|++.|.+..+|+.|++. |. ++.|+.|++.|. ++..|++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhc
Confidence 58899999999999999999984 65 358999999998 5888986
No 46
>KOG1607|consensus
Probab=97.23 E-value=0.00011 Score=81.43 Aligned_cols=104 Identities=39% Similarity=0.852 Sum_probs=93.6
Q ss_pred CcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCcccceeccccceeeecccccc-hhhhhccCcchHHHHHH
Q psy6756 718 TIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLWLFTRNYIFPFWIIRSTALD-APKIANTMFPAYYIFNG 796 (1055)
Q Consensus 718 ~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~~~L~rHv~~p~~i~~s~~~~-~~~~~~~~~p~~~i~~~ 796 (1055)
+++...+..|+-.+.|..-++|.+..+....|+.|...|...|..+|.+++|+|+++++..+ .+.......|.|++++.
T Consensus 186 R~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~~~~~~~~~~~~~~~~~~~ 265 (318)
T KOG1607|consen 186 RVGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSREDFSLRQYQPKPSYYFFNC 265 (318)
T ss_pred cccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCCchHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999975 33333357899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6756 797 LLILLFILHLFWTRLIMKIAVQYFN 821 (1055)
Q Consensus 797 ll~~l~Il~~~l~~lIl~~a~r~f~ 821 (1055)
+++++++++++|..+|.+++.+.+.
T Consensus 266 lL~~Lqll~i~W~~lI~rm~~r~~~ 290 (318)
T KOG1607|consen 266 LLLALQLLHIYWFYLILRMAYRVIK 290 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987
No 47
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.20 E-value=0.00038 Score=57.82 Aligned_cols=51 Identities=35% Similarity=0.672 Sum_probs=40.9
Q ss_pred ccccCCCCCccCChhhHhhhhh-hccCC-CCeecCcCcccccChHHHHHHHHhhcc
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLR-VHTGE-KPFACRLCVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~-~H~ge-kpf~C~~Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
.|.||+|++ ..+...|..|.. .|..+ +.+.||+|...++ .+|.+|+...|+
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 489999999 566789999977 56553 5799999998755 499999987763
No 48
>PHA03098 kelch-like protein; Provisional
Probab=97.19 E-value=0.00025 Score=86.86 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=65.3
Q ss_pred ccccccceeee--ccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhcccccceeeee
Q psy6756 415 SENCTDISMIC--ERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAYMGIVRTV 492 (1055)
Q Consensus 415 ~~~l~Dv~l~~--e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~~m~i~q~~ 492 (1055)
.+.++|+++.+ + ++.+.+||.+|+++|+||+++|..... ...+.+.+ +.+.++.+++|+|+|++ .+..+.
T Consensus 6 ~~~~~Dv~l~~~~~-~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~-~~~~~~~~l~y~Ytg~~--~i~~~~ 77 (534)
T PHA03098 6 LQKFCDESIIIVNG-GGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI-DYDSFNEVIKYIYTGKI--NITSNN 77 (534)
T ss_pred cCCCCCEEEEEEcC-CEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC-CHHHHHHHHHHhcCCce--EEcHHH
Confidence 66799999887 5 899999999999999999999986653 23566777 99999999999999998 333444
Q ss_pred ccCccCccccCCC
Q psy6756 493 LDGFWNPNIWLPP 505 (1055)
Q Consensus 493 l~~fl~~a~~Lp~ 505 (1055)
...++..+..++.
T Consensus 78 ~~~ll~~A~~l~~ 90 (534)
T PHA03098 78 VKDILSIANYLII 90 (534)
T ss_pred HHHHHHHHHHhCc
Confidence 5555555555554
No 49
>KOG4350|consensus
Probab=97.14 E-value=0.00023 Score=79.42 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=65.8
Q ss_pred ccccccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhccccc
Q psy6756 407 DEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAYM 486 (1055)
Q Consensus 407 ~~L~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~~m 486 (1055)
+.+..++-..++.|+++++| +..|+||+.+|+++|.||++++-..-..+ .+..+.+.+.+.+.|..+|.|||+|+..+
T Consensus 33 ~~~~~l~~~e~y~DVtfvve-~~rfpAHRvILAaRs~yFRAlLYgGm~Es-~q~~ipLq~t~~eAF~~lLrYiYtg~~~l 110 (620)
T KOG4350|consen 33 QSFDELFTSEDYSDVTFVVE-DTRFPAHRVILAARSSYFRALLYGGMQES-HQQLIPLQETNSEAFRALLRYIYTGKIDL 110 (620)
T ss_pred HHHHHHhhcCcccceEEEEe-ccccchhhhhHHHHHHHHHHHHhhhhhhh-hhcccccccccHHHHHHHHHHHhhcceec
Confidence 45666777889999999998 89999999999999999999987554332 24467778888999999999999999855
Q ss_pred c
Q psy6756 487 G 487 (1055)
Q Consensus 487 ~ 487 (1055)
.
T Consensus 111 ~ 111 (620)
T KOG4350|consen 111 A 111 (620)
T ss_pred c
Confidence 3
No 50
>KOG4682|consensus
Probab=96.85 E-value=0.00044 Score=77.58 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=72.5
Q ss_pred HHHHhhcCCccceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEec----CCCCHHHHHHHHHHhhcCCC
Q psy6756 319 VRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQF----PDIKVFHMKTILHFLYTGQA 394 (1055)
Q Consensus 319 L~~l~~~~~~~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l----~~v~~~~~~~lL~f~YTG~l 394 (1055)
.+.++.+|.-+||.+.+- |++.+.||.-|.. |+||.+||.+ .+.+.+...|.+ ++|+..+|...+--||.+++
T Consensus 60 yq~lf~q~enSDv~l~al-g~eWrlHk~yL~Q-S~yf~smf~G-tw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEAL-GFEWRLHKPYLFQ-SEYFKSMFSG-TWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHhcCCCcceehhhc-cceeeeeeeeeec-cHHHHHHhcc-ccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 356778999999999994 9999999999875 8999999976 566665544333 57999999999999999999
Q ss_pred cCCcccCCCCccccc
Q psy6756 395 SVPYKLHHPSLADEV 409 (1055)
Q Consensus 395 ~Ls~~nl~~~La~~L 409 (1055)
.|+.+++...||++.
T Consensus 137 eI~l~dv~gvlAaA~ 151 (488)
T KOG4682|consen 137 EIKLSDVVGVLAAAC 151 (488)
T ss_pred eccHHHHHHHHHHHH
Confidence 998888877776643
No 51
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.82 E-value=0.00066 Score=73.61 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=35.7
Q ss_pred CCCeecCc--CcccccChHHHHHHHHhhccccccc--------ccCCCCCcccccCCCCCCcCcc
Q psy6756 668 EKPFACRL--CVAMFKQKAHLLKHLCSVHRNVISS--------VNDDGNSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 668 ekpf~C~~--Cgk~F~~k~sL~~H~r~~H~~~~~~--------~~~HtgeKpy~C~~Cgk~F~t~ 722 (1055)
+|||+|++ |.|.|++...|+-|+.--|...+.| +..--..|||.|++|+|+++..
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNl 411 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNL 411 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccC
Confidence 36777766 7777777777777776444322222 1122346899999999988877
No 52
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=96.76 E-value=0.0028 Score=56.66 Aligned_cols=63 Identities=30% Similarity=0.507 Sum_probs=52.9
Q ss_pred cceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhccc
Q psy6756 420 DISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQA 484 (1055)
Q Consensus 420 Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~ 484 (1055)
|+.+.++ +..+.+|+.+|++.|++|+.++....... ....+.+.+.+.+.++.+++|+|+|+.
T Consensus 1 dv~i~v~-~~~~~~h~~iL~~~s~~f~~~~~~~~~~~-~~~~i~l~~~~~~~f~~~l~~ly~~~~ 63 (90)
T smart00225 1 DVTLVVG-GKKFKAHKAVLAACSPYFKALFSGDFKES-KKSEIYLDDVSPEDFRALLEFLYTGKL 63 (90)
T ss_pred CeEEEEC-CEEEehHHHHHhhcCHHHHHHHcCCCccC-CCCEEEecCCCHHHHHHHHHeecCcee
Confidence 4566774 89999999999999999999998765431 245777788999999999999999987
No 53
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.51 E-value=0.0033 Score=52.23 Aligned_cols=38 Identities=29% Similarity=0.548 Sum_probs=31.2
Q ss_pred CeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCC
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSM 717 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk 717 (1055)
.|.||+|++ ..+...|..|+...|. .+.+.+.||+|..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~---------~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHR---------SESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCc---------CCCCCccCCCchh
Confidence 489999999 5667899999998886 2345799999975
No 54
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.44 E-value=0.0021 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.732 Sum_probs=17.6
Q ss_pred eecCcCcccccChHHHHHHHHh
Q psy6756 671 FACRLCVAMFKQKAHLLKHLCS 692 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r~ 692 (1055)
|+|+.|++.|.++..|.+|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5788888888888888888874
No 55
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.33 E-value=0.003 Score=42.61 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=17.8
Q ss_pred eecCcCcccccChHHHHHHHHhhc
Q psy6756 671 FACRLCVAMFKQKAHLLKHLCSVH 694 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r~~H 694 (1055)
|.|++|++.|.++..|++|++.+|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 678888888888888888887655
No 56
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.22 E-value=0.0014 Score=71.05 Aligned_cols=53 Identities=28% Similarity=0.612 Sum_probs=46.0
Q ss_pred CCcccccCC--CCCccCChhhHhhhhh-hcc------------------CCCCeecCcCcccccChHHHHHHHH
Q psy6756 639 SAREYRCTY--CGKQFGMSWNLKTHLR-VHT------------------GEKPFACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 639 ~~k~y~C~~--C~k~F~~~ssL~~H~~-~H~------------------gekpf~C~~Cgk~F~~k~sL~~H~r 691 (1055)
++|+|+|++ |+|.|+++..|+-|+. -|. ..|||.|++|+|+|+....|+-|..
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 359999998 9999999999999976 341 2389999999999999999999975
No 57
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.05 E-value=0.0025 Score=42.94 Aligned_cols=23 Identities=52% Similarity=1.071 Sum_probs=21.5
Q ss_pred cccCCCCCccCChhhHhhhhhhc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
|+|+.|++.|.++..|.+|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 68999999999999999999875
No 58
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.88 E-value=0.0057 Score=56.80 Aligned_cols=50 Identities=26% Similarity=0.638 Sum_probs=21.4
Q ss_pred ccCCCCCccCChhhHhhhhhh-cc----------------------CCCCeecCcCcccccChHHHHHHHHhh
Q psy6756 644 RCTYCGKQFGMSWNLKTHLRV-HT----------------------GEKPFACRLCVAMFKQKAHLLKHLCSV 693 (1055)
Q Consensus 644 ~C~~C~k~F~~~ssL~~H~~~-H~----------------------gekpf~C~~Cgk~F~~k~sL~~H~r~~ 693 (1055)
+|..|+..|.+...|..|+.. |. -...+.|..|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 467777777777777777653 31 012589999999999999999999964
No 59
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=95.32 E-value=0.012 Score=41.27 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=19.5
Q ss_pred CeecCcCcccccChHHHHHHHHhhc
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLCSVH 694 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r~~H 694 (1055)
+|+|..|++.|.+...|..|++.++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 5778888888888888888887544
No 60
>KOG2838|consensus
Probab=95.19 E-value=0.023 Score=60.90 Aligned_cols=84 Identities=27% Similarity=0.376 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhhcCCccceEEE-eeCCe--------------EEehhhHHhhccChhHHHHhhh-----CCCC---CCCC
Q psy6756 313 PSLADEVRQWFDSENCTDISMI-CERGE--------------ILHAHRLVLASASPLIKRLLEE-----ARFP---LGSP 369 (1055)
Q Consensus 313 ~~l~~~L~~l~~~~~~~DVtl~-ve~g~--------------~f~AHk~VLaA~S~yFr~lF~~-----~~~~---~~~~ 369 (1055)
..+-.+++.+++..-.-|+.++ +.||+ +++||++|.||||++||.++.. .... -..+
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 3455677777776665565444 22343 6999999999999999999831 1111 1123
Q ss_pred eEEecC-CCCHHHHH-HHHHHhhcCCCcC
Q psy6756 370 VYIQFP-DIKVFHMK-TILHFLYTGQASV 396 (1055)
Q Consensus 370 ~~I~l~-~v~~~~~~-~lL~f~YTG~l~L 396 (1055)
..|.+. -|=|.+|. .+|++|||+.+.+
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDl 328 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDL 328 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccch
Confidence 455554 45566654 5789999998843
No 61
>KOG4561|consensus
Probab=95.12 E-value=0.0099 Score=65.35 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCcccceEEEEecchhhHHHHHHHHHhhhcccc--hhhhhHHHHHHHHHHHhhcccceE
Q psy6756 908 FWQMFLHHICTICLLSFSWICNLTRIGTLVLLVHDCADIFLEAAKMAKYAKFDK--TCEILFLAFTFLWLFTRNYIFPFW 985 (1055)
Q Consensus 908 ~~~m~~HH~~Tl~Li~~SY~~n~~rvG~lvl~lHD~sDi~l~~aK~~~y~~~~~--~~~~~F~~f~~~w~~~Rl~~~p~~ 985 (1055)
..+|++||++.++.++..-.-.+-..=...+++-.+|-+|+.+...+.-++.++ +-.+--++..++|++.|+.++|+
T Consensus 138 ~~~fviHh~~s~~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~- 216 (281)
T KOG4561|consen 138 GIEFVIHHIASLVFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPY- 216 (281)
T ss_pred CeeEEeeHHHHhhhheeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHH-
Confidence 468999999983322222222222223456778899999999999888887665 23344556788999999998884
Q ss_pred EEecc------ch-H--------------------H-HHHHHHHHHHHHHHh
Q psy6756 986 IIRRK------KS-I--------------------E-IWSYLNLELLHQKVG 1009 (1055)
Q Consensus 986 ii~~~------~~-~--------------------~-~W~~lI~~~~~~~~~ 1009 (1055)
+-+.. .. . . |||+.|+|.+.|.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~ 268 (281)
T KOG4561|consen 217 MGWHYYWRYQGLVLNQVPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKVLK 268 (281)
T ss_pred HHHHHHHHHhhhhhhhhchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 21111 00 0 0 999999999999996
No 62
>KOG0511|consensus
Probab=95.02 E-value=0.013 Score=65.37 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=91.1
Q ss_pred cceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcCCCcCCcccCCCCccc-
Q psy6756 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPYKLHHPSLAD- 407 (1055)
Q Consensus 329 ~DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG~l~Ls~~nl~~~La~- 407 (1055)
.|++|....|+.|-|||..|+|+|.+|..-+.. -+. +..+|+-..+-+.+|..++.|+|-.. +-.|..--..|..
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~-~~~--~~heI~~~~v~~~~f~~flk~lyl~~-na~~~~qynallsi 225 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVM-FYV--QGHEIEAHRVILSAFSPFLKQLYLNT-NAEWKDQYNALLSI 225 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhh-hcc--ccCchhhhhhhHhhhhHHHHHHHHhh-hhhhhhHHHHHHhh
Confidence 489999877999999999999999998765532 111 12255555677888999999999761 1111111100000
Q ss_pred -----------------------------------cccccc-------------------ccccccc--ceeeeccCeee
Q psy6756 408 -----------------------------------EVRQWF-------------------DSENCTD--ISMICERGEIL 431 (1055)
Q Consensus 408 -----------------------------------~L~~Ll-------------------~~~~l~D--v~l~~e~~~~~ 431 (1055)
.+.+.+ ....+.+ +.+..+ ...
T Consensus 226 ~~kF~~e~l~~~~~kdr~~~~sR~~k~~q~~~tq~~~~~~Li~~~~~~ykt~~dl~Ns~~~~fsl~~ayiql~~~--~Ry 303 (516)
T KOG0511|consen 226 EVKFSKEKLSLEISKDRMEDLSRICKVCQCESTQKIIEKELIHQRYAEYKTHRDLDNSPMKRFSLQGAYIQLPEE--DRY 303 (516)
T ss_pred hhhccHHHhHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccchhhccChhheeeecccccccccc--ccc
Confidence 000000 0011112 222222 347
Q ss_pred eehhhhhhccCHHHHHHhhhcCCC---CCCCceEECCCCCHHHHHHHHHHHhhccc
Q psy6756 432 HAHRLVLASASPLIKRLLEEARFP---LGSPVYIQFPDIKVFHMKTILHFLYTGQA 484 (1055)
Q Consensus 432 ~AHk~vLsA~S~yFr~ll~e~~~~---s~~~~~i~l~~is~~~~~~lLefmYtGe~ 484 (1055)
++|.+++.-| +||+.+|...-.. ...-|...+++......+.++.++|+.+.
T Consensus 304 P~hla~i~R~-eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~t 358 (516)
T KOG0511|consen 304 PAHLARILRV-EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQT 358 (516)
T ss_pred cHHHHHHHHH-HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccc
Confidence 8899887755 7999987644322 12345666777777888999999999987
No 63
>KOG2231|consensus
Probab=94.96 E-value=0.021 Score=69.47 Aligned_cols=45 Identities=38% Similarity=0.651 Sum_probs=30.2
Q ss_pred cccCCCCCccCChhhHhhhhh-hccCCCCeecCcCc---------ccccChHHHHHHHH
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLR-VHTGEKPFACRLCV---------AMFKQKAHLLKHLC 691 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~-~H~gekpf~C~~Cg---------k~F~~k~sL~~H~r 691 (1055)
-.|..| -.|.....|++|+. .| +.+.|.+|- ..--++..|.+|+.
T Consensus 116 ~~~~~c-~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~ 170 (669)
T KOG2231|consen 116 KECLHC-TEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRAELNLHLM 170 (669)
T ss_pred CCCccc-cchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHHHHHHHHh
Confidence 368888 88888999999995 56 345555542 23334566777775
No 64
>KOG4474|consensus
Probab=94.95 E-value=0.051 Score=58.65 Aligned_cols=142 Identities=14% Similarity=0.188 Sum_probs=91.4
Q ss_pred hhhhhccccccchhhhhhheeeeeeecCCccCC-chhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHhhhhcccchhhH
Q psy6756 832 LVKFCESSWRCIYYFFSFGFGLVCLWDKEWLWN-MDTCWVNYPHQSVPSDVWWYYMISLSFYYSLAVSQFFDVKRKDFWQ 910 (1055)
Q Consensus 832 ~~Kf~Es~w~~~~y~~~~~~g~~il~~~~w~~~-~~~~w~~yP~~~~~~~~~~yYl~q~afy~~~~~~l~~~~~RkD~~~ 910 (1055)
..+|..-.-.++.-+++..|..+.+.+.|-..+ +-..| +..-..--++.+||.++.++-+.++++-.+-||
T Consensus 43 ~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~--------s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~s~e 114 (253)
T KOG4474|consen 43 KKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYH--------SLSAYQLLLFSAGYFIYDLVDMLMNEQSELSWE 114 (253)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHH--------hhhhHHHHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 344555444455556666666655555542111 11111 111123345678999999999999888778999
Q ss_pred HHHHHHHHHHHHHHHh-hcCCcccceEEEEecchhhHHHHHHHHHhhhcccch---hhhhHHHHHHHHHHHhhccc
Q psy6756 911 MFLHHICTICLLSFSW-ICNLTRIGTLVLLVHDCADIFLEAAKMAKYAKFDKT---CEILFLAFTFLWLFTRNYIF 982 (1055)
Q Consensus 911 m~~HH~~Tl~Li~~SY-~~n~~rvG~lvl~lHD~sDi~l~~aK~~~y~~~~~~---~~~~F~~f~~~w~~~Rl~~~ 982 (1055)
.++||++++.-.+..- ...+.- +++..+++.+++||||+=++++-+|.++. -.+.-.+-.+.++++|++.-
T Consensus 115 ~LvHH~v~i~aF~~~lf~~~~~~-~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~ 189 (253)
T KOG4474|consen 115 YLVHHVVCIIAFVLGLFYSKFLG-YVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQ 189 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhccc
Confidence 9999999654433332 223333 46677889999999999999999876653 33444556778999998753
No 65
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.69 E-value=0.017 Score=38.83 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=20.1
Q ss_pred cccCCCCCccCChhhHhhhhhhcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHT 666 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~ 666 (1055)
|.|+.|++.|.+...|+.|++.|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999998763
No 66
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=94.42 E-value=0.02 Score=53.07 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=21.8
Q ss_pred ccccccccccccCCCCCCCCCCCCCCccCCCCCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhhc
Q psy6756 589 LAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 589 ~C~~C~k~f~~~~~L~~H~~~h~~e~~~~c~~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
.|..|+..|.+...+..|+...++-....... ..................+.|..|++.|.+...|..|++.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKY----LVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccccccc----cccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 48889999999999999986554432211111 11111121222222233699999999999999999999954
No 67
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.12 E-value=0.025 Score=39.68 Aligned_cols=26 Identities=35% Similarity=0.712 Sum_probs=23.7
Q ss_pred ccccCCCCCccCChhhHhhhhhhccC
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRVHTG 667 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~H~g 667 (1055)
+|+|..|++.|.+...|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 58999999999999999999998853
No 68
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.70 E-value=0.054 Score=43.62 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=19.8
Q ss_pred cCCCCeecCcCcccccChHHHHHHHHhhcc
Q psy6756 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 666 ~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
..+.|-.|++|+..+.+..+|++|+...|.
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence 345788888888888888888888876664
No 69
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.34 E-value=0.031 Score=65.56 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=94.4
Q ss_pred cccccCCCCCccCChhhHhhhhh--hccCC--CCeecC--cCcccccChHHHHHHHHhhcccccccccCCCCCcccccCC
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLR--VHTGE--KPFACR--LCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCF 714 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~--~H~ge--kpf~C~--~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~ 714 (1055)
..+.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.+...+.+|.. .|++.++++|..
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 356 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL-----------LHTSISPAKEKL 356 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcc-----------cccCCCcccccc
Confidence 47899999999999999999999 89999 999999 79999999999999987 345556666644
Q ss_pred --CCCCcCcccce---------------------ecccchhccCHHHHHHHHHcC-------cccccchhhccCccccee
Q psy6756 715 --CSMTIGTLVLL---------------------VHDCADIFLEAAKMAKYAKFD-------KTCEILFLAFTFLWLFTR 764 (1055)
Q Consensus 715 --Cgk~F~t~~lL---------------------cH~C~k~F~~~~~L~~H~r~h-------y~C~~Cg~~F~~~~~L~r 764 (1055)
|.+.+.....- -..|...+.+...+..|...| +.|..|.+.|.....+..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (467)
T COG5048 357 LNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIP 436 (467)
T ss_pred ccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccc
Confidence 33433333110 116888888888888888888 778899999999999999
Q ss_pred ccccc
Q psy6756 765 NYIFP 769 (1055)
Q Consensus 765 Hv~~p 769 (1055)
|...+
T Consensus 437 ~~~~~ 441 (467)
T COG5048 437 HKKIH 441 (467)
T ss_pred ccccc
Confidence 98744
No 70
>PRK04860 hypothetical protein; Provisional
Probab=93.31 E-value=0.049 Score=55.65 Aligned_cols=37 Identities=32% Similarity=0.712 Sum_probs=23.7
Q ss_pred ccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccC
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQ 682 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~ 682 (1055)
+|.|. |++ ...++++|.++|+++++|.|..|+..|..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~ 155 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF 155 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence 46666 665 45566666666666666666666666553
No 71
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.29 E-value=0.28 Score=41.89 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=44.6
Q ss_pred eEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhh
Q psy6756 331 ISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLY 390 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~Y 390 (1055)
|+|+..||+.|.+-+.+.. .|..++.|+++.+.. .. .|.+++|+...|+.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~--~~-~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDE--DE-PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCC--GT-EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccc--cc-ccccCccCHHHHHHHHHHHH
Confidence 6777778999999776655 799999999754432 22 78999999999999999986
No 72
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.03 E-value=0.07 Score=43.01 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=24.4
Q ss_pred CCCCcccccCCCCCccCChhhHhhhhhhccCCCC
Q psy6756 637 VGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKP 670 (1055)
Q Consensus 637 ~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekp 670 (1055)
...+.+-.|++|+..+.+..+|++|++++++.+|
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3456789999999999999999999998887665
No 73
>PRK04860 hypothetical protein; Provisional
Probab=92.79 E-value=0.062 Score=54.92 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=32.9
Q ss_pred CeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcc
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~ 722 (1055)
+|.|. |++ ...++++|.+ +|+++++|.|..|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~r-----------i~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNR-----------VVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHH-----------HhcCCccEECCCCCceeEEe
Confidence 69998 998 7888899987 67899999999999887654
No 74
>KOG2231|consensus
Probab=92.30 E-value=0.1 Score=63.86 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=74.9
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~ 722 (1055)
+.|..|++.+.... ..-.|..| -.|.....|++|+...|.....+. .-+..-.|..|.|.|...
T Consensus 100 ~~C~~C~~~~~~~~------------~~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~l---C~~~~kif~~e~k~Yt~~ 163 (669)
T KOG2231|consen 100 HSCHICDRRFRALY------------NKKECLHC-TEFKSVENLKNHMRDQHKLHLCSL---CLQNLKIFINERKLYTRA 163 (669)
T ss_pred hhcCccccchhhhc------------ccCCCccc-cchhHHHHHHHHHHHhhhhhcccc---ccccceeeeeeeehehHH
Confidence 67999998874322 23468899 889999999999988886332110 001111122223333222
Q ss_pred ------------------cceecccchhccCHHHHHHHHHcC-cccccch------hhccCcccceeccccceeeec
Q psy6756 723 ------------------VLLVHDCADIFLEAAKMAKYAKFD-KTCEILF------LAFTFLWLFTRNYIFPFWIIR 774 (1055)
Q Consensus 723 ------------------~lLcH~C~k~F~~~~~L~~H~r~h-y~C~~Cg------~~F~~~~~L~rHv~~p~~i~~ 774 (1055)
+-+|-.|...|.+...|.+|++.+ |.|.+|. ..|.....|..|..-.+++..
T Consensus 164 el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE 240 (669)
T KOG2231|consen 164 ELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCE 240 (669)
T ss_pred HHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCcccc
Confidence 333557888899999999998877 7777773 567777788888875554444
No 75
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=92.08 E-value=0.13 Score=35.09 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=16.2
Q ss_pred eecCcCcccccChHHHHHHHHhhc
Q psy6756 671 FACRLCVAMFKQKAHLLKHLCSVH 694 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r~~H 694 (1055)
|+|+.|+.... +..|.+|++.+|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 67888887777 778888887666
No 76
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.77 E-value=0.11 Score=35.15 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=14.0
Q ss_pred eecCcCcccccChHHHHHHHH
Q psy6756 671 FACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r 691 (1055)
|.|+.|++.|.....|..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 356666666666666666665
No 77
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.70 E-value=0.13 Score=34.88 Aligned_cols=23 Identities=52% Similarity=0.996 Sum_probs=20.5
Q ss_pred cccCCCCCccCChhhHhhhhhhc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
|+|+.|++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 57999999999999999998754
No 78
>KOG1146|consensus
Probab=91.62 E-value=0.045 Score=70.20 Aligned_cols=51 Identities=27% Similarity=0.614 Sum_probs=32.4
Q ss_pred cccccCCCCCccCChhhHhhhhhh-cc------------------------CCCCeecCcCcccccChHHHHHHHH
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLRV-HT------------------------GEKPFACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~~-H~------------------------gekpf~C~~Cgk~F~~k~sL~~H~r 691 (1055)
+.++|+.|+..|+....|..|||. |. +.++|.|..|...++.+.+|.+|++
T Consensus 464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence 666777777777777777777664 21 1245666666666666666666665
No 79
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=90.53 E-value=0.2 Score=34.32 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=17.3
Q ss_pred eecCcCcccccChHHHHHHHH
Q psy6756 671 FACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r 691 (1055)
|.|.+|++.|.+...++.|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 568888888888888888886
No 80
>KOG2075|consensus
Probab=89.78 E-value=0.44 Score=55.56 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=60.7
Q ss_pred ccccccccccceeeec----cCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhccccc
Q psy6756 411 QWFDSENCTDISMICE----RGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAYM 486 (1055)
Q Consensus 411 ~Ll~~~~l~Dv~l~~e----~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtGe~~m 486 (1055)
.+.......|+.++++ +.+.+++|+.+++..|..|.+++....... ..+.+.++++.++.|.++|.|||.+++..
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~-~s~ei~lpdvepaaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED-ASLEIRLPDVEPAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc-cCceeecCCcChhHhHHHHHHHhcchhhh
Confidence 3455666777777765 235689999999999999999998776542 36788999999999999999999998844
No 81
>KOG4591|consensus
Probab=89.71 E-value=0.079 Score=54.60 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=57.1
Q ss_pred ccccccccccccccccceeeecc--CeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhhc
Q psy6756 405 LADEVRQWFDSENCTDISMICER--GEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTG 482 (1055)
Q Consensus 405 La~~L~~Ll~~~~l~Dv~l~~e~--~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYtG 482 (1055)
|.+....++....+.|+++...| ++.++||+.||+|+|++.+- -...... .....+.++.++.+...++|+||+
T Consensus 53 LLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf-aN~~dek---se~~~~dDad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 53 LLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF-ANGGDEK---SEELDLDDADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh-ccCCCcc---hhhhcccccCHHHHHHhheeeecc
Confidence 33344456778889999987742 46699999999999987652 2222211 236778999999999999999999
Q ss_pred cccc
Q psy6756 483 QAYM 486 (1055)
Q Consensus 483 e~~m 486 (1055)
+...
T Consensus 129 Eidf 132 (280)
T KOG4591|consen 129 EIDF 132 (280)
T ss_pred cccc
Confidence 9843
No 82
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=89.16 E-value=0.75 Score=43.52 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred ceEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcC
Q psy6756 330 DISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTG 392 (1055)
Q Consensus 330 DVtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG 392 (1055)
.|+|+..||..|.+.+.+. ..|..++.|+.+.+........|.+++|+..+|+.+++|++--
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 3778877899999988876 5899999999764443222258999999999999999999864
No 83
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=88.62 E-value=0.21 Score=34.21 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=21.1
Q ss_pred cccCCCCCccCChhhHhhhhhhc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVH 665 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H 665 (1055)
|.|..|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 67999999999999999999864
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.47 E-value=0.26 Score=54.57 Aligned_cols=34 Identities=24% Similarity=0.643 Sum_probs=23.7
Q ss_pred ccccCC--CCCccCChhhHhhhhhhccCCCCeecCcCc
Q psy6756 642 EYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCV 677 (1055)
Q Consensus 642 ~y~C~~--C~k~F~~~ssL~~H~~~H~gekpf~C~~Cg 677 (1055)
.|.||. |..+......|+.|.+..+ ..+-|.+|-
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H--~~~~C~~C~ 186 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQH--GFVLCSECI 186 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhc--CcEEhHhhh
Confidence 477886 7777777888888887544 245677663
No 85
>KOG1146|consensus
Probab=88.46 E-value=0.28 Score=63.28 Aligned_cols=85 Identities=20% Similarity=0.204 Sum_probs=60.1
Q ss_pred cccCCCCCccCChhhHhhhhh-hccCCCCeecCcCcccccChHHHHHHHHhhcccccc--------c------ccCCCCC
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLR-VHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVIS--------S------VNDDGNS 707 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~-~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~--------~------~~~Htge 707 (1055)
-.|..|+..+.+...+..|+. .|.-.+-++|+.|+..|+....|-.|||.+|..... | ..--.+.
T Consensus 437 ~e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~ 516 (1406)
T KOG1146|consen 437 VELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPG 516 (1406)
T ss_pred ccccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCC
Confidence 346667777777777777776 566678888999999999999999998876642211 0 1123356
Q ss_pred cccccCCCCCCcCcc-cceec
Q psy6756 708 SHFNCCFCSMTIGTL-VLLVH 727 (1055)
Q Consensus 708 Kpy~C~~Cgk~F~t~-~lLcH 727 (1055)
++|.|..|...+.++ .+..|
T Consensus 517 ~p~~C~~C~~stttng~Lsih 537 (1406)
T KOG1146|consen 517 KPYPCRACNYSTTTNGNLSIH 537 (1406)
T ss_pred CcccceeeeeeeecchHHHHH
Confidence 788999998888886 44444
No 86
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=86.31 E-value=0.36 Score=32.84 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=18.7
Q ss_pred cccCCCCCccCChhhHhhhhhhcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHT 666 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~ 666 (1055)
|+|+.|+.... +..|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 68999999998 999999999765
No 87
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=85.88 E-value=0.45 Score=33.45 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=14.1
Q ss_pred cccCCCCCccCChhhHhhhhhh
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRV 664 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~ 664 (1055)
|.|..|++.|.+...+..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 4566666666666666666653
No 88
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=85.35 E-value=0.58 Score=43.27 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=46.9
Q ss_pred eEEEeeCCeEEehhhHHhh-ccChhHHHHhhhC--CCCCCCCeEEecCCCCHHHHHHHHHHhhc-CCCc
Q psy6756 331 ISMICERGEILHAHRLVLA-SASPLIKRLLEEA--RFPLGSPVYIQFPDIKVFHMKTILHFLYT-GQAS 395 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLa-A~S~yFr~lF~~~--~~~~~~~~~I~l~~v~~~~~~~lL~f~YT-G~l~ 395 (1055)
|+|.| +|+.|.+=+..|. ....+|..|+... .........+.+ |-++..|+.||+|+-+ |.+.
T Consensus 1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~ 67 (94)
T PF02214_consen 1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLP 67 (94)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-
T ss_pred CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccC
Confidence 68899 7999999999998 7778999999743 111123345555 6799999999999999 5553
No 89
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=83.72 E-value=0.38 Score=33.79 Aligned_cols=21 Identities=29% Similarity=0.660 Sum_probs=19.8
Q ss_pred eecCcCcccccChHHHHHHHH
Q psy6756 671 FACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r 691 (1055)
|.|..|++.|.+...+..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 789999999999999999987
No 90
>KOG2893|consensus
Probab=82.36 E-value=0.72 Score=48.75 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=39.3
Q ss_pred ecccchhccCHHHHHHHHHcC-cccccchhhccCcccceeccccc
Q psy6756 726 VHDCADIFLEAAKMAKYAKFD-KTCEILFLAFTFLWLFTRNYIFP 769 (1055)
Q Consensus 726 cH~C~k~F~~~~~L~~H~r~h-y~C~~Cg~~F~~~~~L~rHv~~p 769 (1055)
|-.|++.|-+...|.+|++-. |+|.+|.++..+--.|.-|.+--
T Consensus 13 cwycnrefddekiliqhqkakhfkchichkkl~sgpglsihcmqv 57 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQV 57 (341)
T ss_pred eeecccccchhhhhhhhhhhccceeeeehhhhccCCCceeehhhh
Confidence 667889999999999999866 99999999999999999998743
No 91
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=81.67 E-value=1.1 Score=31.05 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=14.5
Q ss_pred eecCcCcccccChHHHHHHHH
Q psy6756 671 FACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r 691 (1055)
.+|+.||+.| ....|.+|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 3577777777 6777777775
No 92
>KOG2482|consensus
Probab=80.18 E-value=1.7 Score=48.60 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=33.2
Q ss_pred hccCHHHHHHHHHcC---cccccchhhccCcccceeccc--cceeee-cccccchhhh
Q psy6756 732 IFLEAAKMAKYAKFD---KTCEILFLAFTFLWLFTRNYI--FPFWII-RSTALDAPKI 783 (1055)
Q Consensus 732 ~F~~~~~L~~H~r~h---y~C~~Cg~~F~~~~~L~rHv~--~p~~i~-~s~~~~~~~~ 783 (1055)
-|..+-.+..+.|.. -.|-.|...|-....|..|+. -|+-+. ...+-+.+++
T Consensus 317 n~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k~l~i~pd~~iwD~~e~ 374 (423)
T KOG2482|consen 317 NFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDKHLSILPDEVIWDPREF 374 (423)
T ss_pred chhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccccccccCcccccCchhh
Confidence 344455555555544 678889999999999999997 444333 4444444443
No 93
>PRK05978 hypothetical protein; Provisional
Probab=77.31 E-value=2.5 Score=42.61 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=22.9
Q ss_pred ccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCccc
Q psy6756 711 NCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLWL 761 (1055)
Q Consensus 711 ~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~~~ 761 (1055)
+||.||+ |+-|. ...+.+-.|+.||..|.....
T Consensus 35 rCP~CG~------------G~LF~------g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 35 RCPACGE------------GKLFR------AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred cCCCCCC------------Ccccc------cccccCCCccccCCccccCCc
Confidence 6888886 44443 445566789999988876543
No 94
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=76.00 E-value=1.5 Score=51.23 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred cccccC--CCCCccCChhhHhhhhhhccCCCCeecCc--CcccccChHHHHHHHHhhcccccccccCCCCCcccccCC--
Q psy6756 641 REYRCT--YCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCF-- 714 (1055)
Q Consensus 641 k~y~C~--~C~k~F~~~ssL~~H~~~H~gekpf~C~~--Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~-- 714 (1055)
+++.|+ .|++.|.+...+..|...|.+.+++.|.. |.+.+.....-..+....+. ......+.+.|..
T Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 393 (467)
T COG5048 320 KPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQY------KDLKNDKKSETLSNS 393 (467)
T ss_pred CceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccchhhc------cCccCCccccccccc
Confidence 678888 79999999999999999998888777765 44444444332111111010 1112223333322
Q ss_pred CCCCcCcc-cce---------------ecccchhccCHHHHHHHHHcC
Q psy6756 715 CSMTIGTL-VLL---------------VHDCADIFLEAAKMAKYAKFD 746 (1055)
Q Consensus 715 Cgk~F~t~-~lL---------------cH~C~k~F~~~~~L~~H~r~h 746 (1055)
|-..+.+. ... +-.|.+.+.....+..|++.|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (467)
T COG5048 394 CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH 441 (467)
T ss_pred hhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccc
Confidence 33333333 111 116788888888888888888
No 95
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=74.70 E-value=2.1 Score=29.74 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=18.0
Q ss_pred cccCCCCCccCChhhHhhhhhh
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRV 664 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~ 664 (1055)
.+|+.||+.| ....|.+|+..
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 78889999753
No 96
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=74.09 E-value=2.5 Score=53.22 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=8.4
Q ss_pred CCcccccCCCCC
Q psy6756 706 NSSHFNCCFCSM 717 (1055)
Q Consensus 706 geKpy~C~~Cgk 717 (1055)
...|..|+.||.
T Consensus 472 ~~~p~~Cp~Cgs 483 (730)
T COG1198 472 EPIPQSCPECGS 483 (730)
T ss_pred CCCCCCCCCCCC
Confidence 456777888874
No 97
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=73.70 E-value=2.5 Score=31.26 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.6
Q ss_pred CeecCcCcccccChHHHHHHHH
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r 691 (1055)
+|.|.+|++.|.....+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 5789999999999999999987
No 98
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=73.21 E-value=1.8 Score=35.67 Aligned_cols=31 Identities=23% Similarity=0.621 Sum_probs=24.0
Q ss_pred ccCCCCeecCcCcccccChHHHHHHHHhhcc
Q psy6756 665 HTGEKPFACRLCVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 665 H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
..|+..+.|+-|++.|....+..+|+...|.
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 4566778888888888888888888876664
No 99
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=72.27 E-value=2.7 Score=46.91 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=59.6
Q ss_pred CeecCc--CcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCC---CCc-------Ccccce------------
Q psy6756 670 PFACRL--CVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCS---MTI-------GTLVLL------------ 725 (1055)
Q Consensus 670 pf~C~~--Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cg---k~F-------~t~~lL------------ 725 (1055)
.|.|+. |..+...-..|+.|.+..|. .+-|.+|- +.| ....|.
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-------------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GF 217 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-------------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGF 217 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC-------------cEEhHhhhcCcccCccceeeeecccccccccCCccccCc
Confidence 488986 88888889999999997775 23444443 223 222222
Q ss_pred -----ecccchhccCHHHHHHHHHcC-cccccchhh-------ccCcccceeccc
Q psy6756 726 -----VHDCADIFLEAAKMAKYAKFD-KTCEILFLA-------FTFLWLFTRNYI 767 (1055)
Q Consensus 726 -----cH~C~k~F~~~~~L~~H~r~h-y~C~~Cg~~-------F~~~~~L~rHv~ 767 (1055)
|--|...|.+-+.|.+|.|.. -.|-+|+++ |...-.|-+|..
T Consensus 218 KGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~ 272 (493)
T COG5236 218 KGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFR 272 (493)
T ss_pred CCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhh
Confidence 337889999999999999876 678888765 566666666665
No 100
>KOG0511|consensus
Probab=71.04 E-value=2.7 Score=47.69 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=46.9
Q ss_pred eEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCC-CC--eEEecCCCCHHHHHHHHHHhhcCCCcCCcc
Q psy6756 331 ISMICERGEILHAHRLVLASASPLIKRLLEEARFPLG-SP--VYIQFPDIKVFHMKTILHFLYTGQASVPYK 399 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~-~~--~~I~l~~v~~~~~~~lL~f~YTG~l~Ls~~ 399 (1055)
|.+.++ ...+||+++++ |..||+.||.++-.... ++ +...+++....+.+.++.|+|+.+..+.|+
T Consensus 295 iql~~~--~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~ 363 (516)
T KOG0511|consen 295 IQLPEE--DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFD 363 (516)
T ss_pred cccccc--ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHH
Confidence 444442 34899999986 56899999975322211 22 355566788889999999999999876663
No 101
>KOG2716|consensus
Probab=70.28 E-value=7.8 Score=42.03 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=50.3
Q ss_pred eEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCC-CCCC-eEEecCCCCHHHHHHHHHHhhcCCCcCCc
Q psy6756 331 ISMICERGEILHAHRLVLASASPLIKRLLEEARFP-LGSP-VYIQFPDIKVFHMKTILHFLYTGQASVPY 398 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~-~~~~-~~I~l~~v~~~~~~~lL~f~YTG~l~Ls~ 398 (1055)
|.|-| ||..|...|.-|---..+|++|++. +++ .... ..|. -|=++..|..||+||=.|.+.|+.
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~-~i~~~~d~s~~IF-IDRSpKHF~~ILNfmRdGdv~LPe 73 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLET-DIPVEKDESGCIF-IDRSPKHFDTILNFMRDGDVDLPE 73 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhc-CCccccCCcCcEE-ecCChhHHHHHHHhhhcccccCcc
Confidence 56888 7999999999999999999999975 332 1112 2233 367899999999999999986543
No 102
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.51 E-value=1.9 Score=46.55 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=16.4
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHH
Q psy6756 871 NYPHQSVPSDVWWYYMISLSFYYS 894 (1055)
Q Consensus 871 ~yP~~~~~~~~~~yYl~q~afy~~ 894 (1055)
++|...++.....|.+.+|.+-+.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg 179 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLG 179 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhC
Confidence 456666777777777878877543
No 103
>KOG2893|consensus
Probab=66.24 E-value=1.6 Score=46.26 Aligned_cols=49 Identities=29% Similarity=0.560 Sum_probs=39.1
Q ss_pred ccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhccc
Q psy6756 644 RCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRN 696 (1055)
Q Consensus 644 ~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~ 696 (1055)
-|=+|++.|....-|.+|++. |.|+|.+|.|..-+-..|..|---+|..
T Consensus 12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhke 60 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHKE 60 (341)
T ss_pred eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhhh
Confidence 488899999999999988763 5589999998888877787776656653
No 104
>KOG0320|consensus
Probab=64.99 E-value=5.3 Score=41.10 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCCCcccccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCc
Q psy6756 704 DGNSSHFNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFL 759 (1055)
Q Consensus 704 HtgeKpy~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~ 759 (1055)
|..+..|+|++|--.+..+.-..-.||..|-. .-++.-++.-.+|++|+++-+.+
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~-~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCGHVFCS-QCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccccCCCceecchhhccccccccchhHHH-HHHHHHHHhCCCCCCcccccchh
Confidence 44566699999998888776566678888853 34555666668999999865443
No 105
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=64.89 E-value=3.6 Score=28.93 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=12.9
Q ss_pred ccCCCCCCcCcccceecccchhc
Q psy6756 711 NCCFCSMTIGTLVLLVHDCADIF 733 (1055)
Q Consensus 711 ~C~~Cgk~F~t~~lLcH~C~k~F 733 (1055)
.|+.|++........|..||..|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 36666665555555555555554
No 106
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.50 E-value=4.2 Score=30.16 Aligned_cols=24 Identities=33% Similarity=0.859 Sum_probs=14.7
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVA 678 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk 678 (1055)
|+|..||..+.... .++.|+.|+.
T Consensus 2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE------------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc------------CCCcCcCCCC
Confidence 56777776654321 5667777764
No 107
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.15 E-value=1.9 Score=46.42 Aligned_cols=14 Identities=14% Similarity=-0.363 Sum_probs=9.4
Q ss_pred cccccchhhccCcc
Q psy6756 747 KTCEILFLAFTFLW 760 (1055)
Q Consensus 747 y~C~~Cg~~F~~~~ 760 (1055)
.+|+.||..|....
T Consensus 49 ~vCP~CgyA~~~~~ 62 (214)
T PF09986_consen 49 WVCPHCGYAAFEED 62 (214)
T ss_pred EECCCCCCcccccc
Confidence 56777777776553
No 108
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=62.85 E-value=3.1 Score=42.38 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=8.9
Q ss_pred cccCCCCCCcCcc
Q psy6756 710 FNCCFCSMTIGTL 722 (1055)
Q Consensus 710 y~C~~Cgk~F~t~ 722 (1055)
++|+.||++|.+.
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 5677777777666
No 109
>KOG2785|consensus
Probab=61.61 E-value=7.3 Score=44.61 Aligned_cols=59 Identities=10% Similarity=-0.079 Sum_probs=44.1
Q ss_pred ecccchhccCHHHHHHHHHcC----------------------------cccccch---hhccCcccceeccc--cceee
Q psy6756 726 VHDCADIFLEAAKMAKYAKFD----------------------------KTCEILF---LAFTFLWLFTRNYI--FPFWI 772 (1055)
Q Consensus 726 cH~C~k~F~~~~~L~~H~r~h----------------------------y~C~~Cg---~~F~~~~~L~rHv~--~p~~i 772 (1055)
|=-|++.+++-....+||..+ +.|-.|. +.|.+.-....|+. .++.|
T Consensus 169 CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~HCkl 248 (390)
T KOG2785|consen 169 CLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKGHCKL 248 (390)
T ss_pred eeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhccCccc
Confidence 336777777777777777766 7788888 99999999999998 77777
Q ss_pred ecccccchhhhhc
Q psy6756 773 IRSTALDAPKIAN 785 (1055)
Q Consensus 773 ~~s~~~~~~~~~~ 785 (1055)
.| +=-+..++++
T Consensus 249 ~y-d~ee~~El~e 260 (390)
T KOG2785|consen 249 PY-DGEERLELAE 260 (390)
T ss_pred CC-ChHHHhhhhh
Confidence 77 5455555554
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=60.80 E-value=5.6 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=12.6
Q ss_pred ccceEEEEecchhhHHHHHHHHHhh
Q psy6756 932 RIGTLVLLVHDCADIFLEAAKMAKY 956 (1055)
Q Consensus 932 rvG~lvl~lHD~sDi~l~~aK~~~y 956 (1055)
.-|-+|+-.+.-.++.+...+--.|
T Consensus 592 ~~G~VvIQT~~P~hp~i~~~~~~dy 616 (730)
T COG1198 592 KPGEVVIQTYNPDHPAIQALKRGDY 616 (730)
T ss_pred CCCeEEEEeCCCCcHHHHHHHhcCH
Confidence 4455555555555555555444444
No 111
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=60.71 E-value=7.6 Score=42.09 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=10.5
Q ss_pred CCcccccCCCCCCc
Q psy6756 706 NSSHFNCCFCSMTI 719 (1055)
Q Consensus 706 geKpy~C~~Cgk~F 719 (1055)
..++++||.||.-.
T Consensus 206 k~k~~PCPKCg~et 219 (314)
T PF06524_consen 206 KGKPIPCPKCGYET 219 (314)
T ss_pred cCCCCCCCCCCCcc
Confidence 34889999998544
No 112
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=60.64 E-value=5.6 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.7
Q ss_pred ccccCCCCCccCChhhHhhhhhh
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRV 664 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~ 664 (1055)
.|.|..|++.|.+...+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999999999999873
No 113
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=59.97 E-value=5 Score=38.38 Aligned_cols=9 Identities=44% Similarity=1.320 Sum_probs=4.2
Q ss_pred ccCCCCCcc
Q psy6756 644 RCTYCGKQF 652 (1055)
Q Consensus 644 ~C~~C~k~F 652 (1055)
.|+.||+.|
T Consensus 11 ~Cp~CG~kF 19 (108)
T PF09538_consen 11 TCPSCGAKF 19 (108)
T ss_pred cCCCCcchh
Confidence 444444444
No 114
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.92 E-value=17 Score=34.93 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=46.1
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcccccc-cccC--CCCCcccccCCCCCCc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVIS-SVND--DGNSSHFNCCFCSMTI 719 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~-~~~~--HtgeKpy~C~~Cgk~F 719 (1055)
|.|+.|+-..-. -|-.|+.|+-+-....+|.|.. ||--... ...+ -...+.-.|--|++.|
T Consensus 2 Y~CPrC~skvC~--------------LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f 65 (112)
T TIGR00622 2 YFCPQCRAKVCE--------------LPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPF 65 (112)
T ss_pred ccCCCCCCCccC--------------CCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCC
Confidence 667777755432 5677888888888888777764 3421111 1111 0111122477777776
Q ss_pred Ccc------------cceecccchhccCHHHHHHHHHcC
Q psy6756 720 GTL------------VLLVHDCADIFLEAAKMAKYAKFD 746 (1055)
Q Consensus 720 ~t~------------~lLcH~C~k~F~~~~~L~~H~r~h 746 (1055)
... ...|..|...|--.-..-.|...|
T Consensus 66 ~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 66 PKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred CCcccccccccccccceeCCCCCCccccccchhhhhhcc
Confidence 543 122445555554444455555444
No 115
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=58.89 E-value=7.8 Score=30.54 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=15.8
Q ss_pred CCCeecCcCcccccCh----HHHHHHHHhhc
Q psy6756 668 EKPFACRLCVAMFKQK----AHLLKHLCSVH 694 (1055)
Q Consensus 668 ekpf~C~~Cgk~F~~k----~sL~~H~r~~H 694 (1055)
....+|.+|++.++.. ++|.+|++..|
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 4556777887777663 78888886544
No 116
>KOG1987|consensus
Probab=57.91 E-value=2.6 Score=47.50 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=44.7
Q ss_pred CeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcCCC
Q psy6756 338 GEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQA 394 (1055)
Q Consensus 338 g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG~l 394 (1055)
|..+.+|+++++|+|+.|+.|++..... .....+.+.+.++..++++..|+|+..-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~-~~~~~~~~~d~~~~~~~~~~~F~~~~s~ 164 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFK-ESSKLITLLEEKPEVLEALNGFQVLPSQ 164 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccch-hccccccccccchhhHhhhceEEEeccc
Confidence 5569999999999999999999653332 2333457789999999999999999644
No 117
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.62 E-value=7.6 Score=47.44 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=8.5
Q ss_pred ccCCCCeecCcCcc
Q psy6756 665 HTGEKPFACRLCVA 678 (1055)
Q Consensus 665 H~gekpf~C~~Cgk 678 (1055)
|.......|+.||.
T Consensus 235 h~~~~~l~Ch~Cg~ 248 (505)
T TIGR00595 235 HKKEGKLRCHYCGY 248 (505)
T ss_pred ecCCCeEEcCCCcC
Confidence 44445667777773
No 118
>PRK14873 primosome assembly protein PriA; Provisional
Probab=56.22 E-value=7.3 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=14.6
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCV 677 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cg 677 (1055)
.+|+.|+-... .|.......|..||
T Consensus 393 ~~C~~C~~~L~----------~h~~~~~l~Ch~CG 417 (665)
T PRK14873 393 ARCRHCTGPLG----------LPSAGGTPRCRWCG 417 (665)
T ss_pred eECCCCCCcee----------EecCCCeeECCCCc
Confidence 56777764432 23344567777777
No 119
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=54.81 E-value=8.6 Score=32.36 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=7.1
Q ss_pred cccccCCCCC
Q psy6756 708 SHFNCCFCSM 717 (1055)
Q Consensus 708 Kpy~C~~Cgk 717 (1055)
.+|+|+.||.
T Consensus 49 ~~Y~Cp~CGF 58 (61)
T COG2888 49 NPYRCPKCGF 58 (61)
T ss_pred CceECCCcCc
Confidence 5777777773
No 120
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=54.47 E-value=6.7 Score=37.53 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=6.2
Q ss_pred eecCcCcccccC
Q psy6756 671 FACRLCVAMFKQ 682 (1055)
Q Consensus 671 f~C~~Cgk~F~~ 682 (1055)
..|+.||++|..
T Consensus 10 R~Cp~CG~kFYD 21 (108)
T PF09538_consen 10 RTCPSCGAKFYD 21 (108)
T ss_pred ccCCCCcchhcc
Confidence 445555555543
No 121
>KOG4173|consensus
Probab=53.38 E-value=4.4 Score=42.32 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=26.3
Q ss_pred cccccCC--CCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHH
Q psy6756 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 641 k~y~C~~--C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r 691 (1055)
..+.|+. |.+.|.+.-....|..+-++ -.|.+|.+.|.+..-|..|+.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~ 127 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHIL 127 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHH
Confidence 3455665 55666555555555443222 246666666666666666665
No 122
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=52.28 E-value=12 Score=28.49 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=8.2
Q ss_pred eecCcCcccccChH
Q psy6756 671 FACRLCVAMFKQKA 684 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~ 684 (1055)
+.|+.|+..|.-..
T Consensus 3 ~~CP~C~~~~~v~~ 16 (38)
T TIGR02098 3 IQCPNCKTSFRVVD 16 (38)
T ss_pred EECCCCCCEEEeCH
Confidence 45666666665444
No 123
>PRK04023 DNA polymerase II large subunit; Validated
Probab=52.10 E-value=14 Score=47.56 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHhhccc
Q psy6756 464 FPDIKVFHMKTILHFLYTGQA 484 (1055)
Q Consensus 464 l~~is~~~~~~lLefmYtGe~ 484 (1055)
-.+++.+++..+.+++..|..
T Consensus 473 W~dis~ee~~~L~~~~~~~~~ 493 (1121)
T PRK04023 473 WHDISKEELEALRNALAGGGI 493 (1121)
T ss_pred eecCCHHHHHHHHHHHHhcCc
Confidence 468999999999999998855
No 124
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=51.81 E-value=4.7 Score=36.56 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=8.5
Q ss_pred cccccCCCCCC
Q psy6756 708 SHFNCCFCSMT 718 (1055)
Q Consensus 708 Kpy~C~~Cgk~ 718 (1055)
..|.|+.|++.
T Consensus 34 ~~~~Cp~C~~~ 44 (89)
T COG1997 34 AKHVCPFCGRT 44 (89)
T ss_pred cCCcCCCCCCc
Confidence 46889999864
No 125
>KOG2714|consensus
Probab=51.21 E-value=29 Score=40.65 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=46.3
Q ss_pred eEEEeeCCeEEehhhHHhhccC--hhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhcCCCcC
Q psy6756 331 ISMICERGEILHAHRLVLASAS--PLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASV 396 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLaA~S--~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YTG~l~L 396 (1055)
|.|-| +|+.|..-+.-|+-.. .+|.+|+.+.-.......-...-|=+|+.|..||+|+=||++.+
T Consensus 13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~ 79 (465)
T KOG2714|consen 13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA 79 (465)
T ss_pred EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCC
Confidence 78889 7999998888885544 78888885311111112222233678999999999999999977
No 126
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=51.13 E-value=14 Score=31.01 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=33.7
Q ss_pred cccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCc
Q psy6756 710 FNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFL 759 (1055)
Q Consensus 710 y~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~ 759 (1055)
+.|++|+..+...... .||..| .+..+.++.+.+..|++|++.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~--~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKDPVIL--PSGQTY-ERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCCCEEC--CCCCEE-eHHHHHHHHHHCCCCCCCcCCCChh
Confidence 5688888887766333 577666 4556666777788999999988543
No 127
>KOG2807|consensus
Probab=51.10 E-value=34 Score=38.53 Aligned_cols=90 Identities=16% Similarity=0.307 Sum_probs=57.3
Q ss_pred cccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcc-cccccccCCCCCccc--ccCCCC-
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHR-NVISSVNDDGNSSHF--NCCFCS- 716 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~-~~~~~~~~HtgeKpy--~C~~Cg- 716 (1055)
..|.|+.|+...-+ -|-.|+.|+-+.....+|.+-.. |- .......+..++++- -|-.|+
T Consensus 275 ~Gy~CP~CkakvCs--------------LP~eCpiC~ltLVss~hLARSyh--hL~PL~~F~Eip~~~~~~~~~Cf~C~~ 338 (378)
T KOG2807|consen 275 GGYFCPQCKAKVCS--------------LPIECPICSLTLVSSPHLARSYH--HLFPLKPFVEIPETEYNGSRFCFACQG 338 (378)
T ss_pred CceeCCcccCeeec--------------CCccCCccceeEecchHHHHHHH--hhcCCcchhhccccccCCCcceeeecc
Confidence 56999999866533 68899999999999999988663 32 122223333333221 277773
Q ss_pred CCcCcccceecccchhccCHHHHHHHHHcC
Q psy6756 717 MTIGTLVLLVHDCADIFLEAAKMAKYAKFD 746 (1055)
Q Consensus 717 k~F~t~~lLcH~C~k~F~~~~~L~~H~r~h 746 (1055)
..-+.....|-.|...|-.-...-.|...|
T Consensus 339 ~~~~~~~y~C~~Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 339 ELLSSGRYRCESCKNVFCLDCDVFIHESLH 368 (378)
T ss_pred ccCCCCcEEchhccceeeccchHHHHhhhh
Confidence 323333666777777776666666777666
No 128
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=51.04 E-value=9.8 Score=39.19 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=9.6
Q ss_pred CCCCcccccCCCCC
Q psy6756 704 DGNSSHFNCCFCSM 717 (1055)
Q Consensus 704 HtgeKpy~C~~Cgk 717 (1055)
|-|+-|-+||+||.
T Consensus 144 ~~ge~P~~CPiCga 157 (166)
T COG1592 144 HEGEAPEVCPICGA 157 (166)
T ss_pred ccCCCCCcCCCCCC
Confidence 34577778888873
No 129
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=49.89 E-value=14 Score=37.88 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=14.6
Q ss_pred ccCCCCeecCcCcccccChHHH
Q psy6756 665 HTGEKPFACRLCVAMFKQKAHL 686 (1055)
Q Consensus 665 H~gekpf~C~~Cgk~F~~k~sL 686 (1055)
.....-|.|+.|+.+|+....+
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAM 125 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHH
Confidence 3444567777777777776666
No 130
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=49.64 E-value=18 Score=36.67 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=25.5
Q ss_pred CCeecCcCcccc------cChHHHHHHHH-hhcccccccccCCCCCcccccCCCCCC
Q psy6756 669 KPFACRLCVAMF------KQKAHLLKHLC-SVHRNVISSVNDDGNSSHFNCCFCSMT 718 (1055)
Q Consensus 669 kpf~C~~Cgk~F------~~k~sL~~H~r-~~H~~~~~~~~~HtgeKpy~C~~Cgk~ 718 (1055)
--.+|..|+|=| +..+++..|+. ..|.....|....-|+...+|-.||-+
T Consensus 13 ~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~~ 69 (152)
T PF09416_consen 13 CVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGSR 69 (152)
T ss_dssp CEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT---
T ss_pred cEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCCC
Confidence 445666666555 35678888864 566666667677778889999999853
No 131
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=49.60 E-value=17 Score=36.66 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=11.1
Q ss_pred CCCeecCcCcccccChH
Q psy6756 668 EKPFACRLCVAMFKQKA 684 (1055)
Q Consensus 668 ekpf~C~~Cgk~F~~k~ 684 (1055)
...|.|+.|++.|....
T Consensus 97 ~~~Y~Cp~C~~~y~~~e 113 (147)
T smart00531 97 NAYYKCPNCQSKYTFLE 113 (147)
T ss_pred CcEEECcCCCCEeeHHH
Confidence 34577777777777544
No 132
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=49.41 E-value=17 Score=27.65 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=18.6
Q ss_pred eecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCc
Q psy6756 671 FACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTI 719 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F 719 (1055)
..|+.|+..|.-.... +..+....+|+.||..|
T Consensus 3 i~Cp~C~~~y~i~d~~----------------ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK----------------IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH----------------CCCCCcEEECCCCCCEe
Confidence 3566666666655432 22334456777777655
No 133
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=49.24 E-value=14 Score=28.13 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=8.3
Q ss_pred CCcccccCCCCCCc
Q psy6756 706 NSSHFNCCFCSMTI 719 (1055)
Q Consensus 706 geKpy~C~~Cgk~F 719 (1055)
+.+..+|+.|+..|
T Consensus 22 ~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 22 GGRKVRCPKCGHVF 35 (37)
T ss_pred CCcEEECCCCCcEe
Confidence 34456677776555
No 134
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=48.92 E-value=11 Score=40.54 Aligned_cols=28 Identities=32% Similarity=0.659 Sum_probs=22.9
Q ss_pred CCCeecCcCcccccChHHHHHHHHhhcc
Q psy6756 668 EKPFACRLCVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 668 ekpf~C~~Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
+..|.|++|+|.|+-..-.++|+...|.
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 4569999999999999999999999997
No 135
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.82 E-value=10 Score=36.93 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=8.4
Q ss_pred CCCeecCcCcccccCh
Q psy6756 668 EKPFACRLCVAMFKQK 683 (1055)
Q Consensus 668 ekpf~C~~Cgk~F~~k 683 (1055)
..|-.|+.||..|.-.
T Consensus 24 k~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 24 RRPAVSPYTGEQFPPE 39 (129)
T ss_pred CCCccCCCcCCccCcc
Confidence 4455555555555433
No 136
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=47.37 E-value=24 Score=39.23 Aligned_cols=90 Identities=16% Similarity=0.343 Sum_probs=54.8
Q ss_pred cccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcc-cccccccCCCCC--cccccCCCCC
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHR-NVISSVNDDGNS--SHFNCCFCSM 717 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~-~~~~~~~~Htge--Kpy~C~~Cgk 717 (1055)
..|.|+.|....-+ -|-.|+.|.-......+|.+-.. |- .......+.+++ |.-.|-.|.-
T Consensus 307 gGy~CP~CktkVCs--------------LPi~CP~Csl~LilsthLarSyh--hL~PLk~f~E~p~~~~~ks~~Cf~CQ~ 370 (421)
T COG5151 307 GGYECPVCKTKVCS--------------LPISCPICSLQLILSTHLARSYH--HLYPLKPFVEKPEGTNPKSTHCFVCQG 370 (421)
T ss_pred CceeCCcccceeec--------------CCccCcchhHHHHHHHHHHHHHH--hhccCcccccccCCCCCCCccceeccC
Confidence 45889998754432 57889999988877777776542 21 111222233333 3345888887
Q ss_pred CcCcc------------cceecccchhccCHHHHHHHHHcC
Q psy6756 718 TIGTL------------VLLVHDCADIFLEAAKMAKYAKFD 746 (1055)
Q Consensus 718 ~F~t~------------~lLcH~C~k~F~~~~~L~~H~r~h 746 (1055)
.|... ...|..|...|-.-...-.|...|
T Consensus 371 ~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 371 PFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred CCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHh
Confidence 77332 334666666666666666676666
No 137
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=46.76 E-value=43 Score=28.97 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6756 790 AYYIFNGLLILLFILHLFWTRLIMKIAVQYFNA 822 (1055)
Q Consensus 790 ~~~i~~~ll~~l~Il~~~l~~lIl~~a~r~f~~ 822 (1055)
..+.+++.++++.++|.++.+.+++...+.++.
T Consensus 28 D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi 60 (65)
T PF08390_consen 28 DLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGI 60 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345666666777777877777777666666654
No 138
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.34 E-value=12 Score=28.14 Aligned_cols=25 Identities=32% Similarity=0.681 Sum_probs=14.7
Q ss_pred ccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcc
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVA 678 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk 678 (1055)
.|.|..||..+... +.|-.|+.|+.
T Consensus 2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~ 26 (34)
T cd00729 2 VWVCPVCGYIHEGE------------EAPEKCPICGA 26 (34)
T ss_pred eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence 36777777665321 14557777764
No 139
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=45.47 E-value=17 Score=38.04 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=11.5
Q ss_pred CCCeecCcCcccccChHHH
Q psy6756 668 EKPFACRLCVAMFKQKAHL 686 (1055)
Q Consensus 668 ekpf~C~~Cgk~F~~k~sL 686 (1055)
..-|.|+.|++.|+....+
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAM 133 (178)
T ss_pred CCEEECCCCCcEEeHHHHh
Confidence 3456666666666665543
No 140
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=44.91 E-value=37 Score=29.41 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy6756 792 YIFNGLLILLFILHLFWTRLIMKIAVQYFNAGEAQGKP 829 (1055)
Q Consensus 792 ~i~~~ll~~l~Il~~~l~~lIl~~a~r~f~~k~~~~~~ 829 (1055)
+..+.+++++.++..+++.++|+.+.+++.++.+..+.
T Consensus 26 ~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k~ 63 (65)
T PF08390_consen 26 WDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISKK 63 (65)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 58899999999999999999999999999876665443
No 141
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.68 E-value=17 Score=46.70 Aligned_cols=40 Identities=5% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccc----chhhHHHHHHHHHHHHHH
Q psy6756 884 YYMISLSFYYSLAVSQFFDVKR----KDFWQMFLHHICTICLLS 923 (1055)
Q Consensus 884 yYl~q~afy~~~~~~l~~~~~R----kD~~~m~~HH~~Tl~Li~ 923 (1055)
=|++..|=|+=.+++-|....| ++--.++-|-|++++--.
T Consensus 798 ~yll~va~fiDdLL~k~Ygl~~fYn~~~~eDLiGhLViGlAPHT 841 (1121)
T PRK04023 798 EYLLRVAKFIDDLLEKYYGLEPFYNVEKREDLIGHLVIGLAPHT 841 (1121)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCCCChhhcccceeeccCCcc
Confidence 4666666666655555543332 122234555554554443
No 142
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=44.64 E-value=8.6 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=25.6
Q ss_pred cCCCCcccccCCCCCccCChhhHhhhhhh
Q psy6756 636 NVGSAREYRCTYCGKQFGMSWNLKTHLRV 664 (1055)
Q Consensus 636 ~~~~~k~y~C~~C~k~F~~~ssL~~H~~~ 664 (1055)
...++..+.||-|+..|..+.++.+|...
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 45678889999999999999999999874
No 143
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=44.38 E-value=11 Score=34.27 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCc
Q psy6756 669 KPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGT 721 (1055)
Q Consensus 669 kpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t 721 (1055)
.+|.|+.|++. .. .+ .+...++|..||..|.-
T Consensus 34 ~~~~Cp~C~~~-~V-------kR-------------~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRT-TV-------KR-------------IATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCc-ce-------ee-------------eccCeEEcCCCCCeecc
Confidence 56888888865 11 11 24567888888888753
No 144
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=43.90 E-value=10 Score=33.49 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=4.6
Q ss_pred ccCCCCCcc
Q psy6756 644 RCTYCGKQF 652 (1055)
Q Consensus 644 ~C~~C~k~F 652 (1055)
.|+.||...
T Consensus 3 ~CP~Cg~~a 11 (72)
T PRK09678 3 HCPLCQHAA 11 (72)
T ss_pred cCCCCCCcc
Confidence 455555444
No 145
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=43.56 E-value=18 Score=45.34 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=10.6
Q ss_pred cCCCCCCcCcccceecccchhc
Q psy6756 712 CCFCSMTIGTLVLLVHDCADIF 733 (1055)
Q Consensus 712 C~~Cgk~F~t~~lLcH~C~k~F 733 (1055)
|+.||.........|+.||...
T Consensus 30 Cp~CG~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 30 CPQCGTEVPVDEAHCPNCGAET 51 (645)
T ss_pred CCCCCCCCCcccccccccCCcc
Confidence 5555544444444455555443
No 146
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.29 E-value=13 Score=45.50 Aligned_cols=9 Identities=33% Similarity=0.224 Sum_probs=6.1
Q ss_pred cccccchhh
Q psy6756 747 KTCEILFLA 755 (1055)
Q Consensus 747 y~C~~Cg~~ 755 (1055)
..|+.||-.
T Consensus 254 ~~Cp~C~s~ 262 (505)
T TIGR00595 254 KTCPQCGSE 262 (505)
T ss_pred CCCCCCCCC
Confidence 568888653
No 147
>PF14353 CpXC: CpXC protein
Probab=42.67 E-value=19 Score=35.40 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=31.6
Q ss_pred ccCCCCCCcCcc-cceecccchhccCHHHHHHHHHcC----cccccchhhccCcccceeccc
Q psy6756 711 NCCFCSMTIGTL-VLLVHDCADIFLEAAKMAKYAKFD----KTCEILFLAFTFLWLFTRNYI 767 (1055)
Q Consensus 711 ~C~~Cgk~F~t~-~lLcH~C~k~F~~~~~L~~H~r~h----y~C~~Cg~~F~~~~~L~rHv~ 767 (1055)
.||.||..|... ..... -.....|+.=...- +.|+.||..|.....+.-|=.
T Consensus 3 tCP~C~~~~~~~v~~~I~-----~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~ 59 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSIN-----ADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDP 59 (128)
T ss_pred CCCCCCCeeEEEEEeEEc-----CcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcC
Confidence 588888888666 21111 01222333333322 999999999988777766654
No 148
>KOG0978|consensus
Probab=41.52 E-value=14 Score=46.11 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=37.0
Q ss_pred ccccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCcccceec
Q psy6756 709 HFNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLWLFTRN 765 (1055)
Q Consensus 709 py~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~~~L~rH 765 (1055)
...|+.|..+++...+. -|+..|-...-=.+...++-+|+.|+..|...-.+.-|
T Consensus 643 ~LkCs~Cn~R~Kd~vI~--kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVIT--KCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred ceeCCCccCchhhHHHH--hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 35799998766655322 45556655555556666668999999999876655443
No 149
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=41.50 E-value=15 Score=37.82 Aligned_cols=24 Identities=38% Similarity=0.890 Sum_probs=19.6
Q ss_pred ccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcc
Q psy6756 642 EYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVA 678 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk 678 (1055)
.|.|++||..+ .++.|-+||+||.
T Consensus 134 ~~vC~vCGy~~-------------~ge~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTH-------------EGEAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence 69999998765 4568899999993
No 150
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=41.41 E-value=7.5 Score=34.38 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=26.8
Q ss_pred eecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccC--CCCCCcCcccceec
Q psy6756 671 FACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCC--FCSMTIGTLVLLVH 727 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~--~Cgk~F~t~~lLcH 727 (1055)
+.|+.||..-....+-..+. ...+.-++|. .||.+|.+..-..|
T Consensus 2 m~CP~Cg~~a~irtSr~~s~-------------~~~~~Y~qC~N~eCg~tF~t~es~s~ 47 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITD-------------TTKERYHQCQNVNCSATFITYESVQR 47 (72)
T ss_pred ccCCCCCCccEEEEChhcCh-------------hhheeeeecCCCCCCCEEEEEEEEEE
Confidence 57999987654333222221 1345667888 89988887744433
No 151
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.20 E-value=15 Score=35.87 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=6.4
Q ss_pred ccccCCCCCccCC
Q psy6756 642 EYRCTYCGKQFGM 654 (1055)
Q Consensus 642 ~y~C~~C~k~F~~ 654 (1055)
|-.|+.||..|.-
T Consensus 26 p~vcP~cg~~~~~ 38 (129)
T TIGR02300 26 PAVSPYTGEQFPP 38 (129)
T ss_pred CccCCCcCCccCc
Confidence 3445555555443
No 152
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=40.89 E-value=16 Score=30.81 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=19.1
Q ss_pred cceecccchhccCHHHHHHHHHcCcccccchh
Q psy6756 723 VLLVHDCADIFLEAAKMAKYAKFDKTCEILFL 754 (1055)
Q Consensus 723 ~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~ 754 (1055)
.+.|..||..-..+....+-+..-|+|+.||-
T Consensus 27 ~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 27 KFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGF 58 (61)
T ss_pred EeeCCCCCceeeehhhhHHHcCCceECCCcCc
Confidence 33344555555555555555555599999984
No 153
>KOG4173|consensus
Probab=40.86 E-value=8 Score=40.48 Aligned_cols=52 Identities=25% Similarity=0.665 Sum_probs=44.6
Q ss_pred ccCCCCCccCChhhHhhhhh-hc---------cCCCCeecCc--CcccccChHHHHHHHHhhcc
Q psy6756 644 RCTYCGKQFGMSWNLKTHLR-VH---------TGEKPFACRL--CVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 644 ~C~~C~k~F~~~ssL~~H~~-~H---------~gekpf~C~~--Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
.|.+|.+.|.+..-|..|+. .| .|...|+|-+ |+..|++....+.|+...|.
T Consensus 108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence 69999999999999999976 44 2455699965 99999999999999998886
No 154
>PHA00626 hypothetical protein
Probab=40.81 E-value=14 Score=30.77 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=10.1
Q ss_pred CCeecCcCcccccCh
Q psy6756 669 KPFACRLCVAMFKQK 683 (1055)
Q Consensus 669 kpf~C~~Cgk~F~~k 683 (1055)
..|.|+.||..|+..
T Consensus 22 nrYkCkdCGY~ft~~ 36 (59)
T PHA00626 22 DDYVCCDCGYNDSKD 36 (59)
T ss_pred cceEcCCCCCeechh
Confidence 457777777777644
No 155
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=40.50 E-value=19 Score=29.24 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=15.2
Q ss_pred eecCcCcccccCh-----HHHHHHHHhhc
Q psy6756 671 FACRLCVAMFKQK-----AHLLKHLCSVH 694 (1055)
Q Consensus 671 f~C~~Cgk~F~~k-----~sL~~H~r~~H 694 (1055)
-.|..|++.+... ++|.+|++..|
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 4566666666544 68888887444
No 156
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=40.47 E-value=19 Score=35.43 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=43.4
Q ss_pred CCCCCcccccCCCCCCcCcccceec-------ccchhccCHHHHHHHHHcCcccccchhhccCccc
Q psy6756 703 DDGNSSHFNCCFCSMTIGTLVLLVH-------DCADIFLEAAKMAKYAKFDKTCEILFLAFTFLWL 761 (1055)
Q Consensus 703 ~HtgeKpy~C~~Cgk~F~t~~lLcH-------~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~~~ 761 (1055)
.-...+-|+|.+|..+..-...|.. .|+.. -.+|.+|-..|-+|+.|.-+|.+++.
T Consensus 74 vF~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~C---ya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 74 VFLDPKLYECNICKETSAEERFLKPNECCGYSICNAC---YANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred eecCCCceeccCcccccchhhcCCcccccchHHHHHH---HHHHHHHcccCCCCCccccccccccc
Confidence 3445688999999988777766643 44443 46899999999999999999988764
No 157
>KOG3473|consensus
Probab=40.43 E-value=55 Score=30.53 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=46.6
Q ss_pred eEEEeeCCeEEehhhHHhhccChhHHHHhhhCC-CCCCCCeEEecCCCCHHHHHHHHHHh-----hcCC
Q psy6756 331 ISMICERGEILHAHRLVLASASPLIKRLLEEAR-FPLGSPVYIQFPDIKVFHMKTILHFL-----YTGQ 393 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~-~~~~~~~~I~l~~v~~~~~~~lL~f~-----YTG~ 393 (1055)
|+|+-.||..|-. +-=+|.-|.-.|+||.+.+ ..+.+..+|.+++++...|+.+.+|+ ||+.
T Consensus 19 VkLvS~Ddhefii-kre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~ 86 (112)
T KOG3473|consen 19 VKLVSSDDHEFII-KREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNS 86 (112)
T ss_pred eEeecCCCcEEEE-eehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccc
Confidence 6777667777766 3355777999999997433 23345578999999999999999997 5655
No 158
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.24 E-value=15 Score=46.68 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=22.1
Q ss_pred cccCCCCCCcC----cccceecccchhccCHHHHHHHHHcCcccccchhh
Q psy6756 710 FNCCFCSMTIG----TLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLA 755 (1055)
Q Consensus 710 y~C~~Cgk~F~----t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~ 755 (1055)
.+|+.|+-... ...+.||.||....- -..|+.||..
T Consensus 391 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~----------~~~Cp~Cg~~ 430 (679)
T PRK05580 391 AECPHCDASLTLHRFQRRLRCHHCGYQEPI----------PKACPECGST 430 (679)
T ss_pred cCCCCCCCceeEECCCCeEECCCCcCCCCC----------CCCCCCCcCC
Confidence 46777775432 226678888865321 1568888765
No 159
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=40.19 E-value=22 Score=47.02 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHhhccc
Q psy6756 464 FPDIKVFHMKTILHFLYTGQA 484 (1055)
Q Consensus 464 l~~is~~~~~~lLefmYtGe~ 484 (1055)
-.+++.+++..+.+++-.|+.
T Consensus 498 W~dis~e~~~~L~~~~~~~~~ 518 (1337)
T PRK14714 498 WHDISVEQVRALADAVADAET 518 (1337)
T ss_pred eccCCHHHHHHHHHHHHhccc
Confidence 468999999999998888844
No 160
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.73 E-value=20 Score=36.19 Aligned_cols=38 Identities=16% Similarity=0.475 Sum_probs=25.3
Q ss_pred CcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCccccc
Q psy6756 640 AREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFK 681 (1055)
Q Consensus 640 ~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~ 681 (1055)
...|.|+.|+..|.....+.. .+. ...|.|+.||....
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEELE 134 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEEE
Confidence 456999999999986544332 011 34499999997653
No 161
>KOG2186|consensus
Probab=39.59 E-value=17 Score=39.44 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=34.2
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHh
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCS 692 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~ 692 (1055)
|.|..||....- ..+.+|+...++ .-|.|-.|++.|.+ .+.+.|...
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence 678888877654 456668776666 66888888888887 667777763
No 162
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=38.97 E-value=18 Score=28.00 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=18.4
Q ss_pred ccccCCCCCCcCcc--cceecccchhc
Q psy6756 709 HFNCCFCSMTIGTL--VLLVHDCADIF 733 (1055)
Q Consensus 709 py~C~~Cgk~F~t~--~lLcH~C~k~F 733 (1055)
||+|..|++.|-.. ...-|.|.+.|
T Consensus 12 ~f~C~~C~~~FC~~HR~~e~H~C~~~~ 38 (39)
T smart00154 12 GFKCRHCGNLFCGEHRLPEDHDCPGDY 38 (39)
T ss_pred CeECCccCCccccccCCccccCCcccc
Confidence 78888888888777 33367787655
No 163
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=38.85 E-value=17 Score=28.97 Aligned_cols=10 Identities=20% Similarity=0.800 Sum_probs=5.4
Q ss_pred ccccCCCCCC
Q psy6756 709 HFNCCFCSMT 718 (1055)
Q Consensus 709 py~C~~Cgk~ 718 (1055)
...|+.||..
T Consensus 21 ~~~Cp~CG~~ 30 (46)
T PRK00398 21 GVRCPYCGYR 30 (46)
T ss_pred ceECCCCCCe
Confidence 4556666543
No 164
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.77 E-value=22 Score=45.14 Aligned_cols=26 Identities=19% Similarity=0.568 Sum_probs=14.1
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVA 678 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk 678 (1055)
.+|+.|+-.. ..|.......|+.||+
T Consensus 391 ~~C~~C~~~l----------~~h~~~~~l~Ch~Cg~ 416 (679)
T PRK05580 391 AECPHCDASL----------TLHRFQRRLRCHHCGY 416 (679)
T ss_pred cCCCCCCCce----------eEECCCCeEECCCCcC
Confidence 4566666433 1233345567777773
No 165
>KOG1044|consensus
Probab=38.34 E-value=16 Score=43.92 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=34.7
Q ss_pred ccccCCCCCCcCcccce------------------ecccchhccCHHHHHHHHHcC---cccccchhhccCcccc
Q psy6756 709 HFNCCFCSMTIGTLVLL------------------VHDCADIFLEAAKMAKYAKFD---KTCEILFLAFTFLWLF 762 (1055)
Q Consensus 709 py~C~~Cgk~F~t~~lL------------------cH~C~k~F~~~~~L~~H~r~h---y~C~~Cg~~F~~~~~L 762 (1055)
-|+|..|++......+- |-+|.+.+..+.-..--...| -.|.-||..|.---.+
T Consensus 160 cfkc~~c~~vL~gey~skdg~pyce~dy~~~fgvkc~~c~~fisgkvLqag~kh~HPtCARCsRCgqmF~eGEEM 234 (670)
T KOG1044|consen 160 CFKCKSCSAVLNGEYMSKDGVPYCEKDYQAKFGVKCEECEKFISGKVLQAGDKHFHPTCARCSRCGQMFGEGEEM 234 (670)
T ss_pred eeehhhhcccccceeeccCCCcchhhhhhhhcCeehHHhhhhhhhhhhhccCcccCcchhhhhhhccccccchhe
Confidence 47788887765444222 447777777665555544444 6788899999866554
No 166
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=35.26 E-value=16 Score=36.42 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=14.0
Q ss_pred ccCCCCCCcCcc-cceecccch
Q psy6756 711 NCCFCSMTIGTL-VLLVHDCAD 731 (1055)
Q Consensus 711 ~C~~Cgk~F~t~-~lLcH~C~k 731 (1055)
.|+.||+.|... .-+|..|.+
T Consensus 5 nC~~CgklF~~~~~~iCp~C~~ 26 (137)
T TIGR03826 5 NCPKCGRLFVKTGRDVCPSCYE 26 (137)
T ss_pred cccccchhhhhcCCccCHHHhH
Confidence 577777777764 555776663
No 167
>KOG1280|consensus
Probab=35.19 E-value=25 Score=39.83 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCC
Q psy6756 668 EKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCS 716 (1055)
Q Consensus 668 ekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cg 716 (1055)
...|.|++|++.=.+...+..|+...|... ...-.|+.|+
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda---------~~~~icp~c~ 116 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEA---------STSVICPLCA 116 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCccc---------Ccceeeeccc
Confidence 457999999999999999999999877621 1234677776
No 168
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=34.95 E-value=24 Score=29.89 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=7.6
Q ss_pred cCcccccchh
Q psy6756 745 FDKTCEILFL 754 (1055)
Q Consensus 745 ~hy~C~~Cg~ 754 (1055)
..|+|+.||.
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 3489999984
No 169
>KOG0825|consensus
Probab=34.61 E-value=14 Score=45.88 Aligned_cols=30 Identities=17% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCCcccccCCCCCCcCcc-cceecccchhcc
Q psy6756 705 GNSSHFNCCFCSMTIGTL-VLLVHDCADIFL 734 (1055)
Q Consensus 705 tgeKpy~C~~Cgk~F~t~-~lLcH~C~k~F~ 734 (1055)
.++..-.|.+|+..=.-. -||||.|.+.+.
T Consensus 211 ~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~Y 241 (1134)
T KOG0825|consen 211 LSQEEVKCDICTVHDPEDVLLLCDSCNKVYY 241 (1134)
T ss_pred cccccccceeeccCChHHhheeeccccccee
Confidence 356667899998654444 666888888744
No 170
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=34.25 E-value=22 Score=36.51 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCccccc
Q psy6756 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFK 681 (1055)
Q Consensus 639 ~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~ 681 (1055)
...-|.|+.|+..|+.-..+. --|.|+.||....
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 345699999999998877764 2599999997543
No 171
>KOG4682|consensus
Probab=34.15 E-value=15 Score=42.56 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhcCCCcCCcccCCCCccccccccccccccccceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCC
Q psy6756 379 VFHMKTILHFLYTGQASVPYKLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGS 458 (1055)
Q Consensus 379 ~~~~~~lL~f~YTG~l~Ls~~nl~~~La~~L~~Ll~~~~l~Dv~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~ 458 (1055)
-..+...=.|+|-. +...+.-.|+.+.|= |..++-|+.-|. -|+||++++...+.++ +
T Consensus 49 r~~ll~t~kyiyq~-------------------lf~q~enSDv~l~al-g~eWrlHk~yL~-QS~yf~smf~Gtw~es-~ 106 (488)
T KOG4682|consen 49 RKKLLQTQKYIYQN-------------------LFLQGENSDVILEAL-GFEWRLHKPYLF-QSEYFKSMFSGTWKES-S 106 (488)
T ss_pred HHHHHHHHHHHHHH-------------------HHhcCCCcceehhhc-cceeeeeeeeee-ccHHHHHHhccccChh-h
Confidence 33466667788863 233556678888775 899999998765 5789999999877663 2
Q ss_pred CceEEC----CCCCHHHHHHHHHHHhhcccccceeeeeccCccCccccCCC
Q psy6756 459 PVYIQF----PDIKVFHMKTILHFLYTGQAYMGIVRTVLDGFWNPNIWLPP 505 (1055)
Q Consensus 459 ~~~i~l----~~is~~~~~~lLefmYtGe~~m~i~q~~l~~fl~~a~~Lp~ 505 (1055)
..++.+ ++|+.+.+...+..+|.+|+ ++..+.+.+.+.+|-.++-
T Consensus 107 ~~iIqleI~Dp~Id~~al~~a~gsLY~dEv--eI~l~dv~gvlAaA~~lql 155 (488)
T KOG4682|consen 107 MNIIQLEIPDPNIDVVALQVAFGSLYRDEV--EIKLSDVVGVLAAACLLQL 155 (488)
T ss_pred CceEEEEcCCCcccHHHHHHHHhhhhhhhe--eccHHHHHHHHHHHHHHHH
Confidence 334443 36788899999999999999 4444444455555555544
No 172
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.10 E-value=16 Score=28.63 Aligned_cols=10 Identities=60% Similarity=1.617 Sum_probs=5.4
Q ss_pred cccCCCCCcc
Q psy6756 643 YRCTYCGKQF 652 (1055)
Q Consensus 643 y~C~~C~k~F 652 (1055)
|+|..||..|
T Consensus 6 y~C~~Cg~~f 15 (42)
T PF09723_consen 6 YRCEECGHEF 15 (42)
T ss_pred EEeCCCCCEE
Confidence 4555555555
No 173
>KOG2186|consensus
Probab=33.73 E-value=20 Score=38.98 Aligned_cols=45 Identities=24% Similarity=0.523 Sum_probs=35.9
Q ss_pred CeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcccceec
Q psy6756 670 PFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTLVLLVH 727 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~~lLcH 727 (1055)
.|.|..||-..+- ..+.+|+.++|. .-|.|-.||+.|..-...-|
T Consensus 3 ~FtCnvCgEsvKK-p~vekH~srCrn------------~~fSCIDC~k~F~~~sYknH 47 (276)
T KOG2186|consen 3 FFTCNVCGESVKK-PQVEKHMSRCRN------------AYFSCIDCGKTFERVSYKNH 47 (276)
T ss_pred EEehhhhhhhccc-cchHHHHHhccC------------CeeEEeecccccccchhhhh
Confidence 4899999988764 557779986553 67999999999988766666
No 174
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=33.44 E-value=20 Score=37.36 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCcccccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhh
Q psy6756 706 NSSHFNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLA 755 (1055)
Q Consensus 706 geKpy~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~ 755 (1055)
..-||.|.+|.+.|..... -.||..|-.....++.++. -.|-+||+.
T Consensus 193 e~IPF~C~iCKkdy~spvv--t~CGH~FC~~Cai~~y~kg-~~C~~Cgk~ 239 (259)
T COG5152 193 EKIPFLCGICKKDYESPVV--TECGHSFCSLCAIRKYQKG-DECGVCGKA 239 (259)
T ss_pred CCCceeehhchhhccchhh--hhcchhHHHHHHHHHhccC-Ccceecchh
Confidence 3457888888888776622 2455555555444444333 588888874
No 175
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=33.20 E-value=16 Score=29.76 Aligned_cols=12 Identities=58% Similarity=1.450 Sum_probs=7.6
Q ss_pred cccCCCCCccCC
Q psy6756 643 YRCTYCGKQFGM 654 (1055)
Q Consensus 643 y~C~~C~k~F~~ 654 (1055)
|+|..|+..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (52)
T TIGR02605 6 YRCTACGHRFEV 17 (52)
T ss_pred EEeCCCCCEeEE
Confidence 667777766653
No 176
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=32.98 E-value=20 Score=37.89 Aligned_cols=97 Identities=29% Similarity=0.495 Sum_probs=70.8
Q ss_pred ceecccchhccCHHHHHHHHHcC--cccccchhhccCcccceeccccceeeecccccchhhhhc-cCcchHHHHHHHHHH
Q psy6756 724 LLVHDCADIFLEAAKMAKYAKFD--KTCEILFLAFTFLWLFTRNYIFPFWIIRSTALDAPKIAN-TMFPAYYIFNGLLIL 800 (1055)
Q Consensus 724 lLcH~C~k~F~~~~~L~~H~r~h--y~C~~Cg~~F~~~~~L~rHv~~p~~i~~s~~~~~~~~~~-~~~p~~~i~~~ll~~ 800 (1055)
++.||-...|.+-..+.+-.+.. ..+...+..|...+.+.|++..|..+............+ ...+.++++..++++
T Consensus 105 ~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (205)
T smart00724 105 LLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESGLFPPLLYLLFLLLLLC 184 (205)
T ss_pred HHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHH
Confidence 34455555554444443333332 456789999999999999999999888777766654443 345667888888999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy6756 801 LFILHLFWTRLIMKIAVQYF 820 (1055)
Q Consensus 801 l~Il~~~l~~lIl~~a~r~f 820 (1055)
+.++..+|...+.+.+.+.+
T Consensus 185 l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 185 LQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 177
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=31.82 E-value=41 Score=28.54 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=5.8
Q ss_pred ccccCCCCCc
Q psy6756 642 EYRCTYCGKQ 651 (1055)
Q Consensus 642 ~y~C~~C~k~ 651 (1055)
.|.|+.||+.
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 3666666654
No 178
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.21 E-value=18 Score=27.66 Aligned_cols=29 Identities=28% Similarity=0.699 Sum_probs=15.2
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVA 678 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk 678 (1055)
|+|+.||..|...... .. ...-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKI------SD-DPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEec------CC-CCCCCCCCCCC
Confidence 6677777766432211 11 23455777765
No 179
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.18 E-value=29 Score=43.89 Aligned_cols=9 Identities=11% Similarity=-0.152 Sum_probs=4.9
Q ss_pred cccccchhh
Q psy6756 747 KTCEILFLA 755 (1055)
Q Consensus 747 y~C~~Cg~~ 755 (1055)
..|+.||-.
T Consensus 423 ~~Cp~Cgs~ 431 (665)
T PRK14873 423 WRCPRCGSD 431 (665)
T ss_pred ccCCCCcCC
Confidence 456666543
No 180
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=30.84 E-value=26 Score=36.66 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=24.9
Q ss_pred CcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCccccc
Q psy6756 640 AREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFK 681 (1055)
Q Consensus 640 ~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~ 681 (1055)
...|.|+.|+..|+.-..+. --|.|+.||....
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE 147 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence 35689999999988776653 3599999997544
No 181
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.51 E-value=13 Score=45.99 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q psy6756 910 QMFLHHICTICLLSFSWICNL 930 (1055)
Q Consensus 910 ~m~~HH~~Tl~Li~~SY~~n~ 930 (1055)
..+-||-+.++-..+..-...
T Consensus 476 ~~VqHH~AH~~a~mae~~~~~ 496 (750)
T COG0068 476 LQVQHHHAHALAVMAEHGLPL 496 (750)
T ss_pred eeehhhHHHHHHHHhccCCCC
Confidence 456788887666666655444
No 182
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.46 E-value=34 Score=27.25 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=6.5
Q ss_pred cccCCCCCccC
Q psy6756 643 YRCTYCGKQFG 653 (1055)
Q Consensus 643 y~C~~C~k~F~ 653 (1055)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 55666666554
No 183
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=30.41 E-value=14 Score=42.50 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=6.5
Q ss_pred cccccCCCCCccCChh
Q psy6756 641 REYRCTYCGKQFGMSW 656 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~s 656 (1055)
+.+.|..|.+++-...
T Consensus 251 kav~C~~C~yt~~~~~ 266 (344)
T PF09332_consen 251 KAVTCKQCKYTAFKPS 266 (344)
T ss_dssp EEEEETTT--EESS--
T ss_pred EEEEcCCCCCcccCcc
Confidence 3456666665544443
No 184
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.71 E-value=26 Score=29.22 Aligned_cols=24 Identities=13% Similarity=0.516 Sum_probs=15.3
Q ss_pred cccCCCCCCcCcc--cceecccchhc
Q psy6756 710 FNCCFCSMTIGTL--VLLVHDCADIF 733 (1055)
Q Consensus 710 y~C~~Cgk~F~t~--~lLcH~C~k~F 733 (1055)
-+|+.||+.|... ...|.+|+..+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcc
Confidence 4577777777433 66677777653
No 185
>KOG2593|consensus
Probab=29.58 E-value=35 Score=39.98 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=25.5
Q ss_pred cCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCC
Q psy6756 666 TGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSM 717 (1055)
Q Consensus 666 ~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk 717 (1055)
+....|.|+.|.+.|+.-..++-= -.....|.|..|+-
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L~--------------~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQLL--------------DNETGEFHCENCGG 161 (436)
T ss_pred cccccccCCccccchhhhHHHHhh--------------cccCceEEEecCCC
Confidence 445678888888888877766421 12345788888873
No 186
>KOG2482|consensus
Probab=28.85 E-value=26 Score=39.59 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=25.5
Q ss_pred hHhhhhhhccC-CCCeecCcCccccc-ChHHHHHHHHhhcc
Q psy6756 657 NLKTHLRVHTG-EKPFACRLCVAMFK-QKAHLLKHLCSVHR 695 (1055)
Q Consensus 657 sL~~H~~~H~g-ekpf~C~~Cgk~F~-~k~sL~~H~r~~H~ 695 (1055)
.|.+|++--.+ ....+|-+|..-+. .++....|+-..|.
T Consensus 130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~ 170 (423)
T KOG2482|consen 130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHG 170 (423)
T ss_pred HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhh
Confidence 44555543322 34567999987665 67788888887774
No 187
>KOG4694|consensus
Probab=28.67 E-value=2.3e+02 Score=28.61 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=11.1
Q ss_pred HHHHHHHHHH---HHHHHhh
Q psy6756 911 MFLHHICTIC---LLSFSWI 927 (1055)
Q Consensus 911 m~~HH~~Tl~---Li~~SY~ 927 (1055)
|.+||...+. .|.++|+
T Consensus 41 ~rLH~l~sl~~Y~~i~v~~i 60 (174)
T KOG4694|consen 41 IRLHHLWSLEGYLSILVAYI 60 (174)
T ss_pred HHHHHHHhhhhhHHHHHHHH
Confidence 6778877544 4666664
No 188
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.22 E-value=35 Score=45.23 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=23.7
Q ss_pred ccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCc
Q psy6756 711 NCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFL 759 (1055)
Q Consensus 711 ~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~ 759 (1055)
.|+.||..... ...|..||.......+ ....|+.||......
T Consensus 681 fCP~CGs~te~-vy~CPsCGaev~~des------~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 681 RCPDCGTHTEP-VYVCPDCGAEVPPDES------GRVECPRCDVELTPY 722 (1337)
T ss_pred cCcccCCcCCC-ceeCccCCCccCCCcc------ccccCCCCCCccccc
Confidence 67888776432 3467777775432110 024688888655443
No 189
>PF12773 DZR: Double zinc ribbon
Probab=27.56 E-value=63 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=13.5
Q ss_pred cccccCCCCCCcCcccceecccc
Q psy6756 708 SHFNCCFCSMTIGTLVLLVHDCA 730 (1055)
Q Consensus 708 Kpy~C~~Cgk~F~t~~lLcH~C~ 730 (1055)
....|+.||.........|..||
T Consensus 28 ~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 28 SKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCcCCcCCCcCCcCccCccc
Confidence 45667777776444455555554
No 190
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=27.43 E-value=29 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=8.5
Q ss_pred CeecCcCcccccChH
Q psy6756 670 PFACRLCVAMFKQKA 684 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~ 684 (1055)
|++|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 455666666665443
No 191
>KOG2071|consensus
Probab=27.41 E-value=39 Score=41.22 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=22.9
Q ss_pred CcccccCCCCCccCChhhHhhhhhhcc
Q psy6756 640 AREYRCTYCGKQFGMSWNLKTHLRVHT 666 (1055)
Q Consensus 640 ~k~y~C~~C~k~F~~~ssL~~H~~~H~ 666 (1055)
..+.+|..||.+|.+......||..|.
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 356789999999999999988888774
No 192
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.34 E-value=39 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=12.9
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCccc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAM 679 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~ 679 (1055)
|.|..|+..+.... ..+.+|+.||..
T Consensus 1 Y~C~~Cg~~~~~~~-----------~~~irC~~CG~R 26 (32)
T PF03604_consen 1 YICGECGAEVELKP-----------GDPIRCPECGHR 26 (32)
T ss_dssp EBESSSSSSE-BST-----------SSTSSBSSSS-S
T ss_pred CCCCcCCCeeEcCC-----------CCcEECCcCCCe
Confidence 45666666654211 234567777654
No 193
>KOG2785|consensus
Probab=27.24 E-value=49 Score=38.20 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=44.4
Q ss_pred cccccCCCCCccCChhhHhhhhhhccCC-----------------------CCeecCcCc---ccccChHHHHHHHHh
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLRVHTGE-----------------------KPFACRLCV---AMFKQKAHLLKHLCS 692 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~~H~ge-----------------------kpf~C~~Cg---k~F~~k~sL~~H~r~ 692 (1055)
.|-.|-+|++.+.+-..-..||..|+|- .-+.|-.|. +.|.+-...+.||+.
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 4578999999999999999999987652 347788888 999999999999983
No 194
>KOG3733|consensus
Probab=27.23 E-value=9.4e+02 Score=28.66 Aligned_cols=85 Identities=20% Similarity=0.402 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccceEEEEe-cchhhHHHHHHHHHhhhcccchhhhhHHHHH-------HHHHHHhhcc
Q psy6756 910 QMFLHHICTICLLSFSWICNLTRIGTLVLLV-HDCADIFLEAAKMAKYAKFDKTCEILFLAFT-------FLWLFTRNYI 981 (1055)
Q Consensus 910 ~m~~HH~~Tl~Li~~SY~~n~~rvG~lvl~l-HD~sDi~l~~aK~~~y~~~~~~~~~~F~~f~-------~~w~~~Rl~~ 981 (1055)
.-++--.+..++|.+.|+ =-|.+||-- ||=-.-+--++.++--+ ...|-+|+.|| ++|.+.|+|+
T Consensus 412 PkVlRFc~ca~mIYlGy~----FCGWIVLGPYHdKFrsLntvsECLFSL---INGDDMFaTFA~mqqkS~lvWlFsqiYL 484 (566)
T KOG3733|consen 412 PKVLRFCCCAAMIYLGYC----FCGWIVLGPYHDKFRSLNTVSECLFSL---INGDDMFATFATMQQKSTLVWLFSQIYL 484 (566)
T ss_pred HHHHHHHHHHHHHHHHHh----heeeEEecchHHhhhhHHHHHHHHHHh---hCchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 334445556666766555 468888864 77555554455444332 12456788885 5899999999
Q ss_pred cceEEEeccchHHHHHHHHHHHHHHHHh
Q psy6756 982 FPFWIIRRKKSIEIWSYLNLELLHQKVG 1009 (1055)
Q Consensus 982 ~p~~ii~~~~~~~~W~~lI~~~~~~~~~ 1009 (1055)
|.|.- -..|||+-..+..+.
T Consensus 485 YSFIS--------LfIYmvLSLFIAlIt 504 (566)
T KOG3733|consen 485 YSFIS--------LFIYMVLSLFIALIT 504 (566)
T ss_pred HHHHH--------HHHHHHHHHHHHHHh
Confidence 99622 345566666655554
No 195
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=26.97 E-value=21 Score=45.19 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhccc
Q psy6756 465 PDIKVFHMKTILHFLYTGQA 484 (1055)
Q Consensus 465 ~~is~~~~~~lLefmYtGe~ 484 (1055)
.+++.+++..|.+++..++.
T Consensus 494 ~dis~ee~~~L~~~v~~~~~ 513 (900)
T PF03833_consen 494 HDISPEELNKLAEAVSEAEI 513 (900)
T ss_dssp --------------------
T ss_pred ccCCHHHHHHHHHHHHhccc
Confidence 46777777777777776433
No 196
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=26.82 E-value=26 Score=35.34 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=7.8
Q ss_pred cccCCCCCCcCcc
Q psy6756 710 FNCCFCSMTIGTL 722 (1055)
Q Consensus 710 y~C~~Cgk~F~t~ 722 (1055)
-+|+.||++|+|.
T Consensus 29 ReC~~C~~RFTTf 41 (156)
T COG1327 29 RECLECGERFTTF 41 (156)
T ss_pred hcccccccccchh
Confidence 3566666666665
No 197
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=26.64 E-value=2.3e+02 Score=24.03 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=40.7
Q ss_pred ceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCCCCCCceEECCCCCHHHHHHHHHHHhh
Q psy6756 421 ISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYT 481 (1055)
Q Consensus 421 v~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~s~~~~~i~l~~is~~~~~~lLefmYt 481 (1055)
+++....|..|...+.+ +..|..++.++.+..... ..+.+.+++.+.++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~---~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDED---EPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCG---TEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhcccc---cccccCccCHHHHHHHHHHHHh
Confidence 34555557777777776 458899999987554431 1677899999999999998753
No 198
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=26.30 E-value=1.1e+02 Score=34.58 Aligned_cols=100 Identities=25% Similarity=0.461 Sum_probs=71.7
Q ss_pred cceecccchhccCHHHHHHHHHcCcccccchhhccCcccceeccccceeeecccccchhhhhc-----------cCcchH
Q psy6756 723 VLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLWLFTRNYIFPFWIIRSTALDAPKIAN-----------TMFPAY 791 (1055)
Q Consensus 723 ~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~~~L~rHv~~p~~i~~s~~~~~~~~~~-----------~~~p~~ 791 (1055)
...-|+-.+.|..-+++..+... -.|..-...|.-.|-..||++.= .|+++..- .++..+ -.-|.+
T Consensus 262 I~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln~-kIlw~vlt-~~r~~g~~~L~va~~qykcwisl 338 (395)
T COG5058 262 IYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLNL-KILWSVLT-AFRTIGNFVLDVATQQYKCWISL 338 (395)
T ss_pred EEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-chhhcCceeeEeechhhccchHH
Confidence 34456778888888888888877 66777778889999999998621 12222221 111111 113677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy6756 792 YIFNGLLILLFILHLFWTRLIMKIAVQYFNAGEA 825 (1055)
Q Consensus 792 ~i~~~ll~~l~Il~~~l~~lIl~~a~r~f~~k~~ 825 (1055)
.+++.++..+++++++|..+|++++.|.+..+..
T Consensus 339 ~i~~iLl~aLQlvniyWl~lIvRvayRv~~~~e~ 372 (395)
T COG5058 339 PIVFILLQALQLVNIYWLFLIVRVAYRVIWEGEL 372 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7999999999999999999999999999875443
No 199
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=26.13 E-value=37 Score=42.65 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=24.7
Q ss_pred cccCCCCCCcCcccceecccchhccCHHHHHHHHHcCcccccchhhccCcc
Q psy6756 710 FNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLW 760 (1055)
Q Consensus 710 y~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~~ 760 (1055)
--|+.||..... ..|..||..-.... .-|+.||......|
T Consensus 16 kFC~~CG~~l~~--~~Cp~CG~~~~~~~---------~fC~~CG~~~~~~~ 55 (645)
T PRK14559 16 RFCQKCGTSLTH--KPCPQCGTEVPVDE---------AHCPNCGAETGTIW 55 (645)
T ss_pred ccccccCCCCCC--CcCCCCCCCCCccc---------ccccccCCcccchh
Confidence 357788776643 25777776522111 45888888776664
No 200
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.11 E-value=49 Score=41.99 Aligned_cols=33 Identities=18% Similarity=0.599 Sum_probs=27.1
Q ss_pred ccceeeecccccchhhhhccCcchHHHHHHHHH
Q psy6756 767 IFPFWIIRSTALDAPKIANTMFPAYYIFNGLLI 799 (1055)
Q Consensus 767 ~~p~~i~~s~~~~~~~~~~~~~p~~~i~~~ll~ 799 (1055)
+.|+|+.-...|++..+-.+.|-++||.+.++.
T Consensus 54 ~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (697)
T PF09726_consen 54 LWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTS 86 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 589999999999999988888777777666653
No 201
>KOG1724|consensus
Probab=24.86 E-value=1.5e+02 Score=30.65 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=44.9
Q ss_pred eEEEeeCCeEEehhhHHhhccChhHHHHhhhCCCCCCCCeEEecCCCCHHHHHHHHHHhhc
Q psy6756 331 ISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYT 391 (1055)
Q Consensus 331 Vtl~ve~g~~f~AHk~VLaA~S~yFr~lF~~~~~~~~~~~~I~l~~v~~~~~~~lL~f~YT 391 (1055)
+.|.-.||+.|.+-.. .|-.|..+.+++.+.+..... ..|.|++|....|+.+|+|.+-
T Consensus 7 ikL~SsDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~ 65 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEE-VARQSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKK 65 (162)
T ss_pred EEEEccCCceeehhHH-HHHHhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHH
Confidence 3444447888888554 456688888888766655333 4788999999999999999998
No 202
>KOG4124|consensus
Probab=24.80 E-value=15 Score=41.48 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=11.5
Q ss_pred CCcccccCCCCCCcCcc
Q psy6756 706 NSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 706 geKpy~C~~Cgk~F~t~ 722 (1055)
..|+|.|++|.++++..
T Consensus 395 ~nk~~r~~i~~~~~k~~ 411 (442)
T KOG4124|consen 395 ENKPYRCEVCSKRYKNL 411 (442)
T ss_pred ccCcccChhhhhhhccC
Confidence 46677777777776655
No 203
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.34 E-value=21 Score=40.30 Aligned_cols=28 Identities=21% Similarity=0.609 Sum_probs=13.4
Q ss_pred CCcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccc
Q psy6756 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMF 680 (1055)
Q Consensus 639 ~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F 680 (1055)
|.+...|..|+..+.. ...+|+.||..-
T Consensus 194 G~R~L~Cs~C~t~W~~--------------~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 194 GKRYLHCSLCGTEWRF--------------VRIKCPYCGNTD 221 (290)
T ss_dssp -EEEEEETTT--EEE----------------TTS-TTT---S
T ss_pred ccEEEEcCCCCCeeee--------------cCCCCcCCCCCC
Confidence 4567788888866632 446788888653
No 204
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=24.26 E-value=31 Score=34.75 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=6.0
Q ss_pred ccCCCCCCcCcc
Q psy6756 711 NCCFCSMTIGTL 722 (1055)
Q Consensus 711 ~C~~Cgk~F~t~ 722 (1055)
+|..||++|+|.
T Consensus 30 eC~~C~~RFTTy 41 (147)
T TIGR00244 30 ECLECHERFTTF 41 (147)
T ss_pred cCCccCCcccee
Confidence 455555555444
No 205
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=24.14 E-value=54 Score=31.18 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=19.7
Q ss_pred eec----CcCcccccChHHHHHHHHhhc
Q psy6756 671 FAC----RLCVAMFKQKAHLLKHLCSVH 694 (1055)
Q Consensus 671 f~C----~~Cgk~F~~k~sL~~H~r~~H 694 (1055)
|.| ..|+....+...+++|++.+|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 778 888888888888888888666
No 206
>KOG4124|consensus
Probab=23.30 E-value=25 Score=39.73 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred cccccchhhccCcccceeccc
Q psy6756 747 KTCEILFLAFTFLWLFTRNYI 767 (1055)
Q Consensus 747 y~C~~Cg~~F~~~~~L~rHv~ 767 (1055)
|+|++|.+.....-.|+-|+.
T Consensus 399 ~r~~i~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 399 YRCEVCSKRYKNLNGLKYHRT 419 (442)
T ss_pred ccChhhhhhhccCCCCCceee
Confidence 788888888888888888876
No 207
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=23.30 E-value=45 Score=27.29 Aligned_cols=11 Identities=45% Similarity=1.422 Sum_probs=6.3
Q ss_pred ccccCCCCCcc
Q psy6756 642 EYRCTYCGKQF 652 (1055)
Q Consensus 642 ~y~C~~C~k~F 652 (1055)
.|.|..||+.+
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 35566666555
No 208
>PF04641 Rtf2: Rtf2 RING-finger
Probab=23.16 E-value=57 Score=36.28 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCcccccCCCCCCcCcc-ccee-cccchhccCHHHHHHHHHcCcccccchhhccCc
Q psy6756 706 NSSHFNCCFCSMTIGTL-VLLV-HDCADIFLEAAKMAKYAKFDKTCEILFLAFTFL 759 (1055)
Q Consensus 706 geKpy~C~~Cgk~F~t~-~lLc-H~C~k~F~~~~~L~~H~r~hy~C~~Cg~~F~~~ 759 (1055)
...+|.||++++.|... ...+ --||-+|..+.--.- +..-.|.+||..|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~--k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL--KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh--cccccccccCCccccC
Confidence 57789999999999665 3333 378888876543332 2346799999999954
No 209
>KOG2716|consensus
Probab=22.98 E-value=64 Score=35.15 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=52.7
Q ss_pred ceeeeccCeeeeehhhhhhccCHHHHHHhhhcCCC-CCCCceEECCCCCHHHHHHHHHHHhhcccccceeeeeccCccCc
Q psy6756 421 ISMICERGEILHAHRLVLASASPLIKRLLEEARFP-LGSPVYIQFPDIKVFHMKTILHFLYTGQAYMGIVRTVLDGFWNP 499 (1055)
Q Consensus 421 v~l~~e~~~~~~AHk~vLsA~S~yFr~ll~e~~~~-s~~~~~i~l~~is~~~~~~lLefmYtGe~~m~i~q~~l~~fl~~ 499 (1055)
+.+.+ ||..|...+..|..-..+|++++...-.. .....++ +-|=++.+|+.+|+||-.|.+.+=-....+.+++.+
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~I-FIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCI-FIDRSPKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcE-EecCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 34556 58899999999999999999998755321 1111122 246689999999999999999422222223344555
Q ss_pred ccc
Q psy6756 500 NIW 502 (1055)
Q Consensus 500 a~~ 502 (1055)
|+.
T Consensus 85 A~f 87 (230)
T KOG2716|consen 85 AEF 87 (230)
T ss_pred HHH
Confidence 544
No 210
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.84 E-value=48 Score=33.88 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=12.3
Q ss_pred CeecCcCcccccChHHHH
Q psy6756 670 PFACRLCVAMFKQKAHLL 687 (1055)
Q Consensus 670 pf~C~~Cgk~F~~k~sL~ 687 (1055)
.++|+.||++|..-..+.
T Consensus 28 ~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 28 RRECLACGKRFTTFERVE 45 (154)
T ss_pred eeeccccCCcceEeEecc
Confidence 477888888887655443
No 211
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.80 E-value=45 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=8.4
Q ss_pred cCCCCCCcCcccceecccc
Q psy6756 712 CCFCSMTIGTLVLLVHDCA 730 (1055)
Q Consensus 712 C~~Cgk~F~t~~lLcH~C~ 730 (1055)
|+.||+........|..||
T Consensus 2 Cp~CG~~~~~~~~fC~~CG 20 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCG 20 (23)
T ss_pred CcccCCCCCCcCcchhhhC
Confidence 4555544433333344444
No 212
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=41 Score=31.86 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=20.3
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCccccc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFK 681 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~ 681 (1055)
-.|+.|++.|-. |+ ..|..|++||++|.
T Consensus 10 ridPetg~KFYD---LN--------rdPiVsPytG~s~P 37 (129)
T COG4530 10 RIDPETGKKFYD---LN--------RDPIVSPYTGKSYP 37 (129)
T ss_pred ccCccccchhhc---cC--------CCccccCcccccch
Confidence 358888888843 22 36888999998884
No 213
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=22.50 E-value=56 Score=35.73 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=55.2
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCcccccChHHHHHHHHhhcccccccccCCCCCcccccCCCCCCcCcc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCSMTIGTL 722 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~~k~sL~~H~r~~H~~~~~~~~~HtgeKpy~C~~Cgk~F~t~ 722 (1055)
-.|-.|.+.. ..+|.+-|+|.+|....- ...-..|+..... -....|+|.-|++.=...
T Consensus 126 a~C~EC~R~v-----------w~hGGrif~CsfC~~flC-EDDQFEHQAsCQv---------Le~E~~KC~SCNrlGq~s 184 (314)
T PF06524_consen 126 AVCIECERGV-----------WDHGGRIFKCSFCDNFLC-EDDQFEHQASCQV---------LESETFKCQSCNRLGQYS 184 (314)
T ss_pred cEeeeeeccc-----------ccCCCeEEEeecCCCeee-ccchhhhhhhhhh---------hhcccccccccccccchh
Confidence 3566666554 345678899999985433 3334456554332 234679999998633222
Q ss_pred cceecccchhccCHHHHHHH---HH-cCcccccchhhccCccccee
Q psy6756 723 VLLVHDCADIFLEAAKMAKY---AK-FDKTCEILFLAFTFLWLFTR 764 (1055)
Q Consensus 723 ~lLcH~C~k~F~~~~~L~~H---~r-~hy~C~~Cg~~F~~~~~L~r 764 (1055)
-|.|. -.|-.-...++- .+ ..+.|+.||........|.-
T Consensus 185 CLRCK---~cfCddHvrrKg~ky~k~k~~PCPKCg~et~eTkdLSm 227 (314)
T PF06524_consen 185 CLRCK---ICFCDDHVRRKGFKYEKGKPIPCPKCGYETQETKDLSM 227 (314)
T ss_pred hhhee---eeehhhhhhhcccccccCCCCCCCCCCCccccccccee
Confidence 44444 223222111111 11 11899999998877777643
No 214
>KOG1842|consensus
Probab=22.48 E-value=86 Score=36.96 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=34.4
Q ss_pred CCcccceEEEEecchhhH---HHHHHHHHhhhcccch-------------hhhhHHHHHHHHHHHhhcccc
Q psy6756 929 NLTRIGTLVLLVHDCADI---FLEAAKMAKYAKFDKT-------------CEILFLAFTFLWLFTRNYIFP 983 (1055)
Q Consensus 929 n~~rvG~lvl~lHD~sDi---~l~~aK~~~y~~~~~~-------------~~~~F~~f~~~w~~~Rl~~~p 983 (1055)
|-..-|--++-+-+..|. ++++++.+.|...+.+ ....-.+-++-++--++.-.+
T Consensus 300 ~SL~~get~~tlk~~~dLR~k~~el~~s~D~~sKkI~~l~~~p~~~~E~qLkk~Irl~a~~~lqEkiL~L~ 370 (505)
T KOG1842|consen 300 NSLKEGETTYTLKHAKDLRKKFLELCESIDGTSKKIANLPSSPPSDAEEQLKKNIRLEAKQYLQEKILRLQ 370 (505)
T ss_pred HHHhcccccccHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334478889999999996 7778877777643221 112334556666666655544
No 215
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=22.47 E-value=40 Score=38.23 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=0.0
Q ss_pred cccccCCCCCccCChhhHhhhhh--hccCCCCeecC-------------cCcccccChHHHHHHHHhhccccccc-----
Q psy6756 641 REYRCTYCGKQFGMSWNLKTHLR--VHTGEKPFACR-------------LCVAMFKQKAHLLKHLCSVHRNVISS----- 700 (1055)
Q Consensus 641 k~y~C~~C~k~F~~~ssL~~H~~--~H~gekpf~C~-------------~Cgk~F~~k~sL~~H~r~~H~~~~~~----- 700 (1055)
+.+-|+.|++-|...+-+..|.. .|..+..-.=. +|+-.++...++...-...-..+..+
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~aei~~l 316 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKAEISLL 316 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred -------------------------------------------------ccCCCCCcccccCCCCCCcCcccceecccch
Q psy6756 701 -------------------------------------------------VNDDGNSSHFNCCFCSMTIGTLVLLVHDCAD 731 (1055)
Q Consensus 701 -------------------------------------------------~~~HtgeKpy~C~~Cgk~F~t~~lLcH~C~k 731 (1055)
-+.|+-.+.|.|++|| ++
T Consensus 317 ~r~~~~~at~S~e~EGaeq~d~eQ~DE~~~~k~fdmPLG~DG~PmP~WL~klhgLd~ef~CEICg-------------Ny 383 (470)
T COG5188 317 SRRKKQPATKSSEKEGAEQVDGEQRDEHVSGKSFDMPLGPDGLPMPRWLCKLHGLDIEFECEICG-------------NY 383 (470)
T ss_pred HHHhhccCCCchhhcccccccccccchhhccCcccCCCCCCCCCCchHHHHhcCCCcceeeeecc-------------cc
Q ss_pred hccCHHHHHHH
Q psy6756 732 IFLEAAKMAKY 742 (1055)
Q Consensus 732 ~F~~~~~L~~H 742 (1055)
++.-+....+|
T Consensus 384 vy~GR~~FdrH 394 (470)
T COG5188 384 VYYGRDRFDRH 394 (470)
T ss_pred cccchHHHHhh
No 216
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=22.28 E-value=49 Score=32.69 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=10.9
Q ss_pred ccccCCCCCccCChh
Q psy6756 642 EYRCTYCGKQFGMSW 656 (1055)
Q Consensus 642 ~y~C~~C~k~F~~~s 656 (1055)
|++|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 467888888887654
No 217
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=21.88 E-value=37 Score=31.37 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=9.1
Q ss_pred CcccccCCCCCCcC
Q psy6756 707 SSHFNCCFCSMTIG 720 (1055)
Q Consensus 707 eKpy~C~~Cgk~F~ 720 (1055)
...++|..|++.|.
T Consensus 52 ~GIW~C~~C~~~~A 65 (90)
T PTZ00255 52 VGIWRCKGCKKTVA 65 (90)
T ss_pred eEEEEcCCCCCEEe
Confidence 35667777777664
No 218
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.81 E-value=60 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=22.9
Q ss_pred cccccCCCCCCcCcccceecccchhccCHHHHHHHHHcC--cccccchhhccCc
Q psy6756 708 SHFNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFD--KTCEILFLAFTFL 759 (1055)
Q Consensus 708 Kpy~C~~Cgk~F~t~~lLcH~C~k~F~~~~~L~~H~r~h--y~C~~Cg~~F~~~ 759 (1055)
-.|+|..||.. ..+.+|+.-. ..|+.|+..+...
T Consensus 11 Y~Y~c~~cg~~------------------~dvvq~~~ddplt~ce~c~a~~kk~ 46 (82)
T COG2331 11 YSYECTECGNR------------------FDVVQAMTDDPLTTCEECGARLKKL 46 (82)
T ss_pred eEEeecccchH------------------HHHHHhcccCccccChhhChHHHHh
Confidence 35788888753 3466666666 7888888865443
No 219
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=21.71 E-value=1e+02 Score=33.89 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=8.0
Q ss_pred cccccCCCCCCcC
Q psy6756 708 SHFNCCFCSMTIG 720 (1055)
Q Consensus 708 Kpy~C~~Cgk~F~ 720 (1055)
-.+.|..|...|-
T Consensus 156 ~rv~CghC~~~Fl 168 (256)
T PF09788_consen 156 CRVICGHCSNTFL 168 (256)
T ss_pred eeEECCCCCCcEe
Confidence 4466777766653
No 220
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=21.67 E-value=60 Score=30.56 Aligned_cols=39 Identities=21% Similarity=0.547 Sum_probs=19.8
Q ss_pred cccCCCCCccCChhhHhhhhhhccCCCCeecCcCccccc
Q psy6756 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFK 681 (1055)
Q Consensus 643 y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~F~ 681 (1055)
.+|+.||..-..-..++....--....-|.|..|+..++
T Consensus 63 ~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~~~w~ 101 (104)
T TIGR01384 63 VECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCGYVWR 101 (104)
T ss_pred CCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCCCeeE
Confidence 678888865433222221110111124588888887654
No 221
>KOG2593|consensus
Probab=21.46 E-value=59 Score=38.22 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=25.6
Q ss_pred CCcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCcc
Q psy6756 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVA 678 (1055)
Q Consensus 639 ~~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk 678 (1055)
....|.|+.|.+.|.....++ ..-.....|.|..|+-
T Consensus 125 ~~~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCGG 161 (436)
T ss_pred ccccccCCccccchhhhHHHH---hhcccCceEEEecCCC
Confidence 345699999999997654443 2333345799999983
No 222
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.38 E-value=1.4e+02 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCCCcccccCcccccccCcCCCCcccccCCCCCccCChhhHhhhhhhcc
Q psy6756 618 TNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHT 666 (1055)
Q Consensus 618 c~~c~~~~~~~s~l~~h~~~~~~k~y~C~~C~k~F~~~ssL~~H~~~H~ 666 (1055)
|..|...|......... .......|+|+.|...|-..-..-.|...|.
T Consensus 58 C~~C~~~f~~~~~~~~~-~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 58 CFGCQGPFPKPPVSPFD-ELKDSHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred ccCcCCCCCCccccccc-ccccccceeCCCCCCccccccchhhhhhccC
Confidence 55565555443211100 1222335666666666665555555555443
No 223
>PF15269 zf-C2H2_7: Zinc-finger
Probab=21.33 E-value=64 Score=25.66 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=18.5
Q ss_pred eecCcCcccccChHHHHHHHH
Q psy6756 671 FACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 671 f~C~~Cgk~F~~k~sL~~H~r 691 (1055)
|+|-.|..+..-+++|-.||+
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 778888888889999999987
No 224
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=72 Score=39.94 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=7.6
Q ss_pred ccccccccccccCCCC
Q psy6756 589 LAKQLDWTERNLNSLS 604 (1055)
Q Consensus 589 ~C~~C~k~f~~~~~L~ 604 (1055)
.|..||-.|+-...+-
T Consensus 125 ~CT~CGPRfTIi~alP 140 (750)
T COG0068 125 NCTNCGPRFTIIEALP 140 (750)
T ss_pred ccCCCCcceeeeccCC
Confidence 3555555554444443
No 225
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.88 E-value=74 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=13.7
Q ss_pred ecCcCcccccChHHHHHHHH
Q psy6756 672 ACRLCVAMFKQKAHLLKHLC 691 (1055)
Q Consensus 672 ~C~~Cgk~F~~k~sL~~H~r 691 (1055)
.||+|++.+ ....+.+|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 578888877 5567777775
No 226
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=20.66 E-value=57 Score=32.45 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCeecCcCcccccChHHHHHHHHhhcc
Q psy6756 669 KPFACRLCVAMFKQKAHLLKHLCSVHR 695 (1055)
Q Consensus 669 kpf~C~~Cgk~F~~k~sL~~H~r~~H~ 695 (1055)
....|-+|||.|+.- ++|++.||.
T Consensus 71 d~i~clecGk~~k~L---krHL~~~~g 94 (132)
T PF05443_consen 71 DYIICLECGKKFKTL---KRHLRTHHG 94 (132)
T ss_dssp S-EE-TBT--EESBH---HHHHHHTT-
T ss_pred CeeEEccCCcccchH---HHHHHHccC
Confidence 446788888888864 899998775
No 227
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.39 E-value=72 Score=35.02 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=20.4
Q ss_pred CcccccCCCCCccCChhhHhhhhhhccCCCCeecCcCccc
Q psy6756 640 AREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAM 679 (1055)
Q Consensus 640 ~k~y~C~~C~k~F~~~ssL~~H~~~H~gekpf~C~~Cgk~ 679 (1055)
...-.|.+|+....-.....+| -.+|..|...
T Consensus 63 ~p~v~CrVCq~~I~i~gk~~Qh--------VVkC~~CnEA 94 (256)
T PF09788_consen 63 APVVTCRVCQSLIDIEGKMHQH--------VVKCSVCNEA 94 (256)
T ss_pred CceEEeecCCceecccCcccee--------eEECCCCCcc
Confidence 3456788888766554444333 3688888755
No 228
>COG4640 Predicted membrane protein [Function unknown]
Probab=20.09 E-value=1.4e+02 Score=34.73 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCcccceEEEEe
Q psy6756 918 TICLLSFSWICNLTRIGTLVLLV 940 (1055)
Q Consensus 918 Tl~Li~~SY~~n~~rvG~lvl~l 940 (1055)
.+.+.+..|+++.-+-|-=.||.
T Consensus 146 s~~~~S~k~i~r~ek~gkkylfF 168 (465)
T COG4640 146 SIQTRSGKYILRVEKNGKKYLFF 168 (465)
T ss_pred chhhccccceeEeccCCceEEEe
Confidence 56777889999999988776654
Done!