RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6756
(1055 letters)
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 73.3 bits (181), Expect = 4e-16
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
++C C + F S +L TH+R HTGEKPFAC +C F + +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 62.5 bits (153), Expect = 3e-12
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ C CG++F S K H + P + + HL
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENE 77
Score = 45.6 bits (109), Expect = 2e-06
Identities = 4/30 (13%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 643 YRCTYCGKQFGMSWNLKTH---LRVHTGEK 669
+ +++L+ L+ GE+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 27.1 bits (61), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 669 KPFACRLCVAMFKQKAHLLKH 689
KPF CR+C+ F + HL H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH 22
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 73.3 bits (181), Expect = 6e-16
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
++C C + F S +L TH+R HTGEKPFAC +C F + +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 69.0 bits (170), Expect = 2e-14
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C C ++F S +L H+R+HTG+KPF CR+C+ F + HL H
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 51.3 bits (124), Expect = 3e-08
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ C CG++F S K H ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 72.2 bits (178), Expect = 9e-16
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGE--KPFACRLCVAMFKQKAHLLKHLCSVH 694
Y C C +F S +K H+ E F C C + +K+ L HL H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 54.8 bits (133), Expect = 1e-09
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 657 NLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ + R H+GEKP+ C +C A F Q + H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 53.7 bits (130), Expect = 3e-09
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHLR-VHTGEKPFA 672
+ C +C +L HLR H+ P +
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 71.3 bits (175), Expect = 2e-15
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHT---GEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+C CG +L H R H F C C F++ + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 44.7 bits (106), Expect = 4e-06
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACR 674
+ C +CGK+F ++ H A +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 41.2 bits (97), Expect = 8e-05
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKH 689
+G C +C +QKA L H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH 26
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 69.9 bits (172), Expect = 5e-15
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRV--HTGEKPFACRLCVAMFKQKAHLLKHL 690
YRC C + + N H K + C C F +K ++ H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 44.1 bits (105), Expect = 5e-06
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTG 667
Y C +C K+F N+ H+++
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 43.7 bits (104), Expect = 6e-06
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
GE + C++C ++ ++ +H + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 69.9 bits (172), Expect = 2e-14
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C + C ++F S LK H R HTG KPF C+ C F + HL H
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 69.1 bits (170), Expect = 3e-14
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
++C C ++F S +LKTH R HTGEKPF+CR C F + L++H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 63.7 bits (156), Expect = 3e-12
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ C Y C K++ +L+ H R HTGEKP+ C C F + L +H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Score = 36.0 bits (84), Expect = 0.013
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVH 665
+ C + C K+F S L H +H
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.5 bits (75), Expect = 0.18
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 666 TGEKPFAC--RLCVAMFKQKAHLLKH 689
+ ++PF C C + + +HL H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH 27
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 67.1 bits (165), Expect = 4e-14
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+C+ C L+ H R+H ++PF C C KQ ++L KH+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 49.4 bits (119), Expect = 6e-08
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C YC NL H++ G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 42.1 bits (100), Expect = 3e-05
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ P C C KA L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 67.9 bits (167), Expect = 4e-14
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
C CGK F ++L H H+GEKP++C +C FK+K + H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 63.3 bits (155), Expect = 2e-12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGE--KPFACRLCVAMFKQKAHLLKHLCSVH 694
Y C CG +F + H+R H G KP+ C+ C F + HL H+ VH
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 43.2 bits (103), Expect = 2e-05
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHL-RVHTGEK 669
Y C CGK F +L H+ +VH+G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 40.2 bits (95), Expect = 2e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKH 689
+G AC +C +F+ HL +H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH 26
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 66.7 bits (164), Expect = 4e-14
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+ C C + F +LK H R HT EKP+ C LC F ++ L++H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 38.2 bits (90), Expect = 5e-04
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHL-RVHTGEK 669
Y C C + F L H ++H+G
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 28.6 bits (65), Expect = 1.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 669 KPFACRLCVAMFKQKAHLLKH 689
+ F C +C F ++ HL +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 67.8 bits (167), Expect = 5e-14
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C C S +L HLR+H+ E+PF C++C + + L H
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 65.9 bits (162), Expect = 2e-13
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
++C CGK F LKTH+R HTG KP+ C+ C + L KH
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 55.1 bits (134), Expect = 1e-09
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C C S L HLR HTG+ +
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 38.9 bits (92), Expect = 7e-04
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKH 689
P C +C F +K L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH 27
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 68.3 bits (168), Expect = 6e-14
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ C CGK F S LK H VHTGEKPF C C F +L H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Score = 66.8 bits (164), Expect = 3e-13
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
++CT+ CGK+F + +NL+TH+R+HTG++P+ C C F Q +L H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 57.5 bits (140), Expect = 4e-10
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
C + C K F + ++ HL H G + C C F + + L +H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH 53
Score = 51.4 bits (124), Expect = 5e-08
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPF 671
Y C + C K+F S NLK+H+ H K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 66.7 bits (164), Expect = 7e-14
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C C F NL +H VHTGEKP+ C +C A F + A+L H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 51.3 bits (124), Expect = 2e-08
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPF 671
YRC CG QF NLKTH R+H+GEKP+
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 51.3 bits (124), Expect = 2e-08
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 654 MSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
M + H + +KP+ C C A F+ K +L H
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH 36
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 66.7 bits (164), Expect = 7e-14
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C YCGK+F ++K H +HTGEKP C++C F Q ++L+ H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 66.3 bits (163), Expect = 1e-13
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ C CGK F S L THL +H+ +P+ C+ C F QK+ + KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 38.9 bits (92), Expect = 5e-04
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTG 667
++C CGK F S NL TH R HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 67.3 bits (165), Expect = 7e-14
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRN 696
Y+CT+ C +F S L H R HTG KPF C +C F + HL H+ H+N
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRHQN 100
Score = 61.9 bits (151), Expect = 7e-12
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 629 SSCTTSNNVGSAREYRCT--YCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKA 684
SS ++ ++ R + C C K + S +LK HLR HTGEKP+ C C F +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 685 HLLKHL 690
L +H
Sbjct: 62 ELTRHY 67
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 67.9 bits (167), Expect = 1e-13
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
C C K+F + LK H R HTGEKPF C C + +K +LL+H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 67.1 bits (165), Expect = 2e-13
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+ C+ C + F L+ H+ HTGE P+ C C F QK L H+ +H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 61.4 bits (150), Expect = 2e-11
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 643 YRCTYCGKQFGMSWNLKTHLR---VHTGEKPFACRLCVAMFKQKAHLLKH 689
+ C CGK + NL H ++ E+ F C +C F+++ L H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 43.6 bits (104), Expect = 3e-05
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTH-LRVHTGEK 669
Y+C+ C +QF +L++H +++H+G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 39.8 bits (94), Expect = 7e-04
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKH 689
+G C C F K +L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH 26
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 65.8 bits (161), Expect = 1e-13
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 627 SKSSCTTSNNVGSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKA 684
+ + V R Y C C ++F S L H+R+HTG+KPF CR+C+ F +
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 685 HLLKHL 690
HL H+
Sbjct: 64 HLTTHI 69
Score = 39.6 bits (93), Expect = 3e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHT 666
++C C + F S +L TH+R HT
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTHT 73
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 65.2 bits (160), Expect = 2e-13
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK F S L H RVHTGEKP+ C C F Q + L+ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 49.4 bits (119), Expect = 7e-08
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
Y+C CGK F + L H R+HT
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 46.7 bits (112), Expect = 7e-07
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 658 LKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+H+GEKP+ C C F + + L++H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 67.6 bits (166), Expect = 2e-13
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKHLCSVH 694
++CT+ C K + NLKTHLR HTGEKP+ C C F + KH H
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 64.5 bits (158), Expect = 3e-12
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 643 YRCTYCGKQFGMSWNLKTHL---RVHTGEKPFACRLCVAM-----FKQKAHLLKH 689
R C ++F L H+ +H K F C FK + L+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 61.1 bits (149), Expect = 5e-11
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 641 REYRCTYCG-----KQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+E+ C + G + F + L H+R HTGEKP C C + + +L H
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 58.4 bits (142), Expect = 5e-10
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 643 YRCTY--CGKQFGMSWNLKTH-LRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
Y C + C K F + + H R H+ EKP+ C+L C + + L KH
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 41.0 bits (97), Expect = 4e-04
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTG 667
Y C C K++ +L+ H++ G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 29.5 bits (67), Expect = 3.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 668 EKPFACRLCVAMFKQKAHLLKHLCSVH 694
E C F + L+ H+ S H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 65.9 bits (162), Expect = 3e-13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ C +CG+ F S+NL H R HT E+P+ C +C F+++ HL H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 63.6 bits (156), Expect = 2e-12
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C C K F +L+ H +H+ EKPF C+ C F Q L H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 51.3 bits (124), Expect = 3e-08
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK F S L H +H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 48.2 bits (116), Expect = 4e-07
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 655 SWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
S +K F C+ C F + +LL H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 64.4 bits (158), Expect = 5e-13
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F S +L H R HTGEKP+ C C F Q++HL+ H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 47.8 bits (115), Expect = 3e-07
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 653 GMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
G S + + + C C F + L KH
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 47.4 bits (114), Expect = 4e-07
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPF 671
Y+C CGK F +L H RVHTG P
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 66.5 bits (163), Expect = 7e-13
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ C + CGK F S NLK H R HTGEKPF C C F + KH
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 61.9 bits (151), Expect = 2e-11
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKHL 690
C GK F + L H+RVHTGEKPF C C +F + +L H
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 61.1 bits (149), Expect = 5e-11
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA---------CRLCVAMFKQKAHLLKH 689
C + F L TH+ + P C FK K L+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 55.8 bits (135), Expect = 4e-09
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C + C ++F S + K H+ VHT +K
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 45.4 bits (108), Expect = 1e-05
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 648 CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
G + + + + C F L+ H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTH 44
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 64.1 bits (157), Expect = 8e-13
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C + CG +F S L H R HTG +PF C+ C F + HL H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 60.6 bits (148), Expect = 1e-11
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 689
+ C Y CGK + S +LK HLR HTGEKP+ C C F + L +H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 35.2 bits (82), Expect = 0.013
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVH 665
++C C + F S +L H++ H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 29.4 bits (67), Expect = 1.3
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKHL 690
T C + + +HL HL
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHL 27
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 63.4 bits (155), Expect = 1e-12
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
Y C + C K+F + LK H +VH G C + K LKH+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 59.9 bits (146), Expect = 2e-11
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKH 689
Y C + CGK F LK H HT + P+ C C F + L +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 66.3 bits (163), Expect = 2e-12
Identities = 25/47 (53%), Positives = 28/47 (59%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F NL+ H R HTGEKP+AC C F Q AHL H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 64.8 bits (159), Expect = 6e-12
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F NL TH R HTGEKP+ C C F ++ L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 64.4 bits (158), Expect = 8e-12
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y+C CGK F +L H R HTGEKP+ C C F Q+A+L H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 64.0 bits (157), Expect = 1e-11
Identities = 22/47 (46%), Positives = 25/47 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK F S +L H R HTGEKP+ C C F K L +H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Score = 63.6 bits (156), Expect = 1e-11
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK F +L+ H R HTGEKP+ C C F ++ +L H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 49.4 bits (119), Expect = 9e-07
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 652 FGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
S + + GEKP+AC C F + HL +H
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 47.4 bits (114), Expect = 4e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
Y+C CGK F L H R HTG+K
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 62.0 bits (150), Expect = 2e-12
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
Y C CG + LK H+R HT +P+ C C FK K +L KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 41.6 bits (97), Expect = 3e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
R Y CTYC F NL H++ K
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 64.5 bits (158), Expect = 6e-12
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKH 689
Y C++ CG + +W L+ HL HTGEKPF C C F HL +H
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Score = 62.6 bits (153), Expect = 3e-11
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKH 689
+ C C K F +L H HTGEK F C C F KA++ KH
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 93
Score = 59.1 bits (144), Expect = 5e-10
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKH 689
Y C + CGK F LK H HT + P+ C C F + L +H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 58.0 bits (141), Expect = 1e-09
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 643 YRCT--YCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHR 695
Y C C K+F + LK H +VH G C + K LKH+ H+
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 55.3 bits (134), Expect = 1e-08
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 643 YRCT--YCGKQFGMSWNLKTHLRVHTGEK--PFACRL--CVAMFKQKAHLLKH 689
+ C C +F N+K H K + C C FK+ L H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Score = 44.1 bits (105), Expect = 6e-05
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 661 HLRVHTGEKPFACRL--CVAMFKQKAHLLKHLC 691
+ K + C C A + + L HLC
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 61.0 bits (149), Expect = 7e-12
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRV-HTGEKPFAC--RLCVAMFKQKAHLLKH 689
C + CG+ F L H + H +K F+C C F K HL +H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 58.7 bits (143), Expect = 4e-11
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 643 YRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
+ C CGK F +LK H+++H+ + + C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 37.1 bits (87), Expect = 0.002
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 665 HTGEKPFACRL--CVAMFKQKAHLLKHLCSVH 694
+G C C +F + +L H H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 61.7 bits (151), Expect = 9e-12
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK F H+ +H G +P+ C +C FK K HL+ H
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 61.7 bits (151), Expect = 1e-11
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
Y C CGK+F M +L H+++HTG KP+ C +C F + +H
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 54.0 bits (131), Expect = 4e-09
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHL 686
Y C C K+F + H V + K + + +
Sbjct: 66 YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 38.6 bits (91), Expect = 0.001
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
+G+K + C+ C F K+ +H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRH 28
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 59.4 bits (145), Expect = 1e-11
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
Y C CG +F LK+HLR+HTG P +
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 42.9 bits (102), Expect = 7e-06
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
GEKP+ C +C F+ L HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 60.1 bits (146), Expect = 1e-11
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 627 SKSSCTTSNNVGSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQ 682
S S + R + C++ CGK + S +LK H R HTGEKPF+C C F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 683 KAHLLKHL 690
L +H
Sbjct: 62 SDELSRHR 69
Score = 30.4 bits (69), Expect = 0.39
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVH 665
+ + C++ C ++F S L H R H
Sbjct: 46 KPFSCSWKGCERRFARSDELSRHRRTH 72
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 59.5 bits (145), Expect = 3e-11
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGE----KPFACRLCVAMFKQKAHLLKH 689
Y C++C K F L H + + F C C F ++ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 56.4 bits (137), Expect = 4e-10
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
+ C+ CGK F + H G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 50.6 bits (122), Expect = 4e-08
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 657 NLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ + R HTGEKP+AC C F+QK L H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 58.0 bits (141), Expect = 4e-11
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 643 YRCTYCGKQFGMSWNLKTHL-RVHTGEKPFACRLCVAMF 680
Y C CGK F +L H+ +VHT E+P C++ V+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 44.1 bits (105), Expect = 4e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+ + KP+ C+ C F + HL H+ VH
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 56.9 bits (137), Expect = 1e-10
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
++ C CGK F ++L H H+GEKP++
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.44
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
K AC +C +F+ HL +H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.7 bits (135), Expect = 3e-10
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CG F S +L HLR H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 42.2 bits (100), Expect = 1e-05
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+ TGEKPF C+ C F L KHL
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.6 bits (135), Expect = 3e-10
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
Y+C CG +F +L+ H+ +HTG P +
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
GEKP+ C C A F Q AHL H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 5e-10
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+RC+ CGK F + N H R+HTGEKP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 2e-06
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ GE+ C C F Q ++ ++H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 7e-10
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK FG +L HL+ H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.0 bits (105), Expect = 3e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+GE+P+ C C F + +HL++H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 9e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK + +NL H +VHTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C + K +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 1e-09
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK+F S +L+TH RVHTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ GEK + C +C F Q +HL H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-09
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACR 674
Y C YCGK FG+S L H R+HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 6e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKP+ C C F A L++H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 55.7 bits (133), Expect = 2e-09
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVIS 699
+ C C F S +LK H+R E C +C F L H+C H +S
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNICVS 129
Score = 32.2 bits (72), Expect = 0.31
Identities = 14/84 (16%), Positives = 23/84 (27%)
Query: 612 NHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPF 671
NH+ + T E++ T + Q + L F
Sbjct: 16 NHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQF 75
Query: 672 ACRLCVAMFKQKAHLLKHLCSVHR 695
C LC+ F L +H+
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEH 99
Score = 28.0 bits (61), Expect = 9.6
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLR 663
C C K+F + + H+
Sbjct: 99 HTKVCPVCKKEFTSTDSALDHVC 121
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.9 bits (128), Expect = 2e-09
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ CT+CGK F NL TH R+HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG+KPF C C F+ K +L+ H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK + NL H RVH GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ + EKP+ C C + ++ +L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK F L H VHT EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKPF C +C F ++ L +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK + +L H RVHTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKP+ C C +K++ L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-09
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F +S +L HLRVHT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
TGEKP++C +C F AHL +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 3e-09
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F NL TH +HTGEKP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F+ ++L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 52.9 bits (128), Expect = 3e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK F L H ++HTGEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKPF C C F +++ L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C C F + +L+ H VH GEKP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.8 bits (99), Expect = 2e-05
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ GEK + CR C F Q + L H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C CGK F +S L TH R+HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKPF C C F + L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F +L TH VHTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F + L H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK+F + L +H RVHTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKPF C C F Q + L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C+ CGK F L H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F +K+ L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C+ C K F L H R+HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.5 bits (101), Expect = 1e-05
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ G P+ C C F K LL H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C C K F +L H R+HTGEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C +C F+ + L H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 52.7 bits (127), Expect = 3e-09
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ + CT+ CG +F S L H R H+G KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 38.8 bits (91), Expect = 2e-04
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 660 THLRVHTGEKPFAC--RLCVAMFKQKAHLLKHL 690
+ TGEKPFAC C F + L +H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-09
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
YRC CGK F NL H R+HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F QKA+L +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 4e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK FG +L HLR+H+ EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GE+PF C C F +++HL H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 52.2 bits (126), Expect = 4e-09
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F + L H RVH+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 4e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C+ C F+ + LLKH
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.2 bits (126), Expect = 4e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CG+ F + +L H R+HTGEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 3e-06
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ + K C C F K+HL +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.2 bits (126), Expect = 4e-09
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F +L H R HTGEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG++P+ C C FK K+ L+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 4e-09
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
YRC CGK F NL TH ++HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F +++L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 4e-09
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y CT CGK F NL H ++HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE+P+ C +C F +++L+KH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 4e-09
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F L+ H R+HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F + L +H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.1 bits (126), Expect = 5e-09
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C C K F NL H R HTGE +
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F K++L+ H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 5e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C+ CGK F S+ L H HT EKP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 43.3 bits (103), Expect = 6e-06
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ GEKP+ C C F L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 5e-09
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK+F + +L +H RVHTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKPF C C F Q +HL H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 51.8 bits (125), Expect = 5e-09
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ C K F + L H R HTG KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG KP+ C C F K+ L+ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 5e-09
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK F + +H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKPF C C F + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 5e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C+ CGK F NL H ++HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE PF C C +F K +L+ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 5e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C+ CGK F +L H R+HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKP+ C C F + HL +H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 5e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F +L H R+H+G+KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
TGEKP+ C +C F + L H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 6e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C+ C K F NL H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKPF C C F K++L+ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 6e-09
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + L H R+HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C +F+ ++L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 6e-09
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C+ CGK F L+ H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F K+ L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 6e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C C K F +L H RVH+GEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C +C F A L +H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.7 bits (125), Expect = 6e-09
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F L H R HTGE +
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG KP+ C C F+ K++L+ H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 6e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F + NL H ++HT +KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F +++L+KH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 6e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F L H ++HTGEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C +C F +K+ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+CT CGK F L H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.5 bits (101), Expect = 1e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP C C F K+ L+ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 6e-09
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H R+HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKP+ C C +F Q +HL H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 6e-09
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F + +L TH +HTG+KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 44.1 bits (105), Expect = 3e-06
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F ++ L H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 51.4 bits (124), Expect = 6e-09
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C+ C K F L H + H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
+GEKPF C C F K++LL H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 7e-09
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F + +L TH +HTGEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 5e-06
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG KP+ C C F + L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 7e-09
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK + +L H RVHTGEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKPF C C + Q+ HL +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 7e-09
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F +L H R+HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F QK+HL +H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 51.4 bits (124), Expect = 7e-09
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + L H ++HTGEKP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEK + C C +F + + L +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 7e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F +L H H+GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 44.5 bits (106), Expect = 2e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F+ ++ L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 51.4 bits (124), Expect = 7e-09
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
YRC CGK F +L H+RVHTG P +
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 46.0 bits (110), Expect = 5e-07
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
GEKP+ C C F QK L+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 7e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C CGK F + L H R+HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP CR C F + L+ H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 8e-09
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C C K F +L H RVHTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 44.1 bits (105), Expect = 3e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +G+KP+ C+ C F Q HL +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 8e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C CGK F L H R+HTGEKP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKPF C C F L +H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 8e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ CT CGK F L H ++HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG K F C C F +K+ L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 9e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK FG + + H R+HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 45.3 bits (108), Expect = 1e-06
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F + +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 9e-09
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F +S +L H VH+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
TGEKP+ C++C F+ +HL++H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 9e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F + L +H R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE P+ C C F +K L+ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 9e-09
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK F + +L +HLR+HTGEKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKPF C+ C F+Q HL H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C C K F S +L H R+HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ G+K F C C F Q + L H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F L H R+HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F +K+ L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + L H R+HTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C F Q + L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H R+HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C +F Q +HL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F + L H R+H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEK + C+ C F + LLKH
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F L H R HTGEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKP+ C C F QK+ L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F L H R+H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE+ + C C F QK+ L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C C K F +L H + HTGEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C++C F QKAHL +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
++C CGK F S +L H R+HTGEKP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE+P C C F Q AHL++H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 51.0 bits (123), Expect = 1e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F L +H R H GE +
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 41.0 bits (97), Expect = 4e-05
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
+GE P+ C C F +K L+ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F L H R+HTGEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE+ + C C F +K+ L+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + L H RVHTGEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG KP+ C C F Q + L +H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACR 674
Y C CGK F + +L H RVHTGEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C+ C F Q HL++H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H +HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TG+KP+ C C +F Q +HL +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C+ CGK F L H+R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ GEKP+ C C F K++L+ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 51.3 bits (123), Expect = 2e-08
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 549 APIGASVGIKNIKKKAAPYNEVLSTAYSKSSKW-KHKDITALAKQLDWTER 598
G+S GIK+ N+ L + +K+ K + L+KQLDW+ R
Sbjct: 1 GSSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVR 51
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H +HTGEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C +F++ +HL +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H +HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C +F Q +HL +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 53.8 bits (130), Expect = 2e-08
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 300 SPGHLTLKYKLHHPS-LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRL 358
S G T+ LADE+ +++ TD + G+ AH+ +LA+ SP+ +
Sbjct: 5 SGGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA-GQEFQAHKAILAARSPVFSAM 63
Query: 359 LE----EARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASV 396
E E++ + V I D++ K ++ F+YTG+A
Sbjct: 64 FEHEMEESK---KNRVEIN--DVEPEVFKEMMCFIYTGKAPN 100
Score = 53.8 bits (130), Expect = 2e-08
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 392 GQASVPYKLHHPS-LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLE 450
GQ ++ LADE+ +++ TD + G+ AH+ +LA+ SP+ + E
Sbjct: 7 GQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA-GQEFQAHKAILAARSPVFSAMFE 65
Query: 451 ----EARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQA 484
E++ + V I D++ K ++ F+YTG+A
Sbjct: 66 HEMEESK---KNRVEIN--DVEPEVFKEMMCFIYTGKA 98
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H RVHTG KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C +F Q +HL +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 3e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y+C CGK F + +L H +HTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGEKP+ C C +F Q +HL++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 49.6 bits (119), Expect = 3e-08
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
Y C CGK F +L H R + P +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 38.8 bits (91), Expect = 2e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
GE P+ C C F Q+ L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.5 bits (119), Expect = 3e-08
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
Y C CGK F +L H R+HTG P +
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 39.5 bits (93), Expect = 1e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
+G++ + C+ C F+QK L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.4 bits (119), Expect = 3e-08
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F L +H + H+G+ +
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.1 bits (100), Expect = 2e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ TGE P+ C C +F +K L+ H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 4e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
+ C CGK F L+ H RVH GEK
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 39.5 bits (93), Expect = 1e-04
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+GEK C C F + L H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.1 bits (118), Expect = 5e-08
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F L H R H G +
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ +GEKP+ C C F K+ L+ H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 5e-08
Identities = 88/630 (13%), Positives = 177/630 (28%), Gaps = 165/630 (26%)
Query: 22 LSNPEVHNESKSPENSHKPLRKSSSLVESSSE------EEVMRSTSAEKIATRLQQEIEN 75
LS E+ + S + LR +L+ E EEV+R + + + + ++ E
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQ 104
Query: 76 QALFYRKRKSRYMDYYNSNTI---DDV---EEQRKLQEKVQQQTAPENYVV---MPHRKR 126
++ R + YN N + +V + KL++ + + P V+ +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGV----- 158
Query: 127 RPGF-----HNSPAQNPPFIPFSPSYIDEISFRHYRSPH--LLSSSNPPYLMDNPSKTPP 179
G + I ++ ++ SP L Y +D +
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 180 HPGVLLPNSVEEIVVKYRPPSEEGSPIQRPASPRYGGIGNN-----DAPWGPWSL----- 229
+ + I E + + S Y N +
Sbjct: 218 DHSSNIKLRIHSI-------QAELRRLLK--SKPY----ENCLLVLLNVQNAKAWNAFNL 264
Query: 230 -CQ---TGGDSSTPDLSKGSCRRKCNSKQRPRITWLCLIGNADLAFTTPPPRIHPSYRSH 285
C+ T D ++ I+ + + + T
Sbjct: 265 SCKILLTTRFKQVTD--------FLSAATTTHIS----LDHHSMTLT------------P 300
Query: 286 PPTLMKFRLVCDKNSPGHLTLKYKLHHP--------SLADEVRQW--FDSENCTDISMIC 335
D P L + +P S+ D + W + NC ++ I
Sbjct: 301 DEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 336 ERGEILHAHRLVLASASP-LIKRLLEE-ARFPLGSPVYIQFPDIKVFHMKTIL--HFLYT 391
E L P +++ + + FP + + P + +++ + +
Sbjct: 360 ESS---------LNVLEPAEYRKMFDRLSVFPPSAHI----P-TILL---SLIWFDVIKS 402
Query: 392 GQASVPYKLHHPSLADEVRQWFDSENCT--DI--SMICERGEILHAHRLVLASASPLIKR 447
V KLH SL + + + I + + HR ++ + + K
Sbjct: 403 DVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-IPKT 458
Query: 448 LLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAYMGIVRTVLDGFWNPNIWLPPNI 507
+ P Y + I H+K I H + F ++L +
Sbjct: 459 FDSDDLIPPYLDQYF-YSHI-GHHLKNIEH----PERM--------TLF--RMVFL--DF 500
Query: 508 TWSDLEPNDKIQYADHRHLFYPLPMALGMLLLRFFLEKYWFAPIGASVGIKNIKKKAAPY 567
+ LE KI RH + +L L+ Y I Y
Sbjct: 501 RF--LE--QKI-----RHDSTAWNASGSILNTLQQLKFY----------KPYICDNDPKY 541
Query: 568 NEVLST-------AYSKSSKWKHKDITALA 590
+++ K+ D+ +A
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 51.8 bits (123), Expect = 1e-06
Identities = 97/698 (13%), Positives = 172/698 (24%), Gaps = 258/698 (36%)
Query: 230 CQTGGDSSTPDLSKGSCRRKCNSKQRP----RITWLCLIGNADLAFTTPPPRIHPSYRSH 285
C+ D LSK SK R+ W L ++ + +Y
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--- 91
Query: 286 PPTLM-KFRLVCDKNSPGHLTLKYKLHHPSLADEVRQWFDSENCTDISMICERGEILHAH 344
LM + P +T Y L ++ Q F N + R +
Sbjct: 92 -KFLMSPIKTEQ--RQPSMMTRMYIEQRDRLYNDN-QVFAKYNVS-------RLQPYLK- 139
Query: 345 RLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHM----KTILHFLYTGQASVPYKL 400
+++ L E R P ++ + + KT + + YK+
Sbjct: 140 ----------LRQALLELR-----PA----KNVLIDGVLGSGKTWV----ALDVCLSYKV 176
Query: 401 HHPSLADEVRQWFDSENCTDISMI---------------CERGEILHAHRLVLASASPLI 445
+ ++ W + +NC + R + +L + S +
Sbjct: 177 QC-KMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 446 KRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQAYMGIVRTVLDGFWNPNIW--- 502
+RLL+ + +L VL N W
Sbjct: 235 RRLLKSKPYE-----------------NCLL---------------VLLNVQNAKAWNAF 262
Query: 503 ------LPPNITWSDLEPNDKIQYADHRHL--------FYP------------------- 529
L +T + D + A H+ P
Sbjct: 263 NLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 530 ------LPMALGML--LLRFFLE--KYWFAPIGASVGIKNIKKKAAPYNEVLSTAYSKSS 579
P L ++ +R L W V + VL A +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 580 KW------KHKDITALAKQLDWTERNLNSLSGPGGGHTNHEHEDTNSTNEDMISKSSCTT 633
I + L W + D + S
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDV---------------IKSDVMVVVNKLHKYSLVEK 419
Query: 634 SNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSV 693
E + L+V + ++
Sbjct: 420 QPK-----ESTISIPSIYL--------ELKVKLENEY---------------------AL 445
Query: 694 HRNVISSVNDDGNSSHFNCCFCSMTIGTLVLLVHDCAD--IF------LEAAKMA-KYAK 744
HR+++ N F S + D + L+ + +
Sbjct: 446 HRSIVDHYN-------IPKTFDSDDLIP------PYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 745 FDKTCEILFLAFTFLWLFTRNYIFPFWIIRSTALDAP-KIANTM--FPAY--YI------ 793
F +FL F FL I STA +A I NT+ Y YI
Sbjct: 493 FRM----VFLDFRFL----EQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 794 FNGLL--ILLFIL----HLFWTRL--IMKIAVQYFNAG 823
+ L+ IL F+ +L ++ +++IA+ +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 46.0 bits (108), Expect = 8e-05
Identities = 77/538 (14%), Positives = 152/538 (28%), Gaps = 159/538 (29%)
Query: 541 FFLEKYWFAPIGASVGIKN-IKKKAAPYNEVLSTAYSKSSKWKHKDITALAKQLDWTERN 599
F + S+ + I+++ YN+ ++K + + + L + L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQAL----LE 146
Query: 600 LNS-----LSGPGG-GHTNHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFG 653
L + G G G K+ Y+ C F
Sbjct: 147 LRPAKNVLIDGVLGSG------------------KTWVALD----VCLSYK-VQCKMDFK 183
Query: 654 MSW-NLKTHLRVHTGEKPFAC--RLCVAMFKQKAHLLKHLCSVHRNVISSVNDD-----G 705
+ W NLK ++ E +L + H ++ I S+ +
Sbjct: 184 IFWLNLK---NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLLK 239
Query: 706 NSSHFNCCFCSMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFL-----AFTFL- 759
+ + NC LLV ++ + AK F+ +C+IL FL
Sbjct: 240 SKPYENC-----------LLVLL--NV--QNAKAWNA--FNLSCKILLTTRFKQVTDFLS 282
Query: 760 -------------WLFTRNY---IFPFWI-IRSTALDAPKIANTMFP------AYYIFNG 796
T + + ++ R L P+ T P A I +G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDG 340
Query: 797 LLILLFILHLFWTRL--IMKIAVQYFNAGEAQGKPSVLVKFCESSWRCIYYFFSFGFGLV 854
L H+ +L I++ ++ E + L F S+ I L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTIL-----LS 393
Query: 855 CLWDKEWLWNMDTCWVNYPHQSVPSDVWWYYMISLSFYYSLAVSQFFDVKRKDFWQMFLH 914
+W +++ S +++ YSL K+ + +
Sbjct: 394 LIW-----FDVIK--------SDVMV-----VVNKLHKYSLVE------KQPKESTISIP 429
Query: 915 HICTICLLSFSWICNLTRIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLW 974
I L L V + L + + Y +
Sbjct: 430 SI------------------YLELKVKLENEYALHRSIVDHYNIPKTFDS-----DDLIP 466
Query: 975 LFTRNYIFPF-----WIIRRKKSIEIWS--YLNLELLHQKVGDDLRSSSSGEEVGDDL 1025
+ Y + I + + ++ +L+ L QK+ D + ++ + + L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Score = 40.6 bits (94), Expect = 0.003
Identities = 59/406 (14%), Positives = 117/406 (28%), Gaps = 88/406 (21%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQ---KAHLLKHLCSVHRNVISS--VNDDGNSSHFNCCFC 715
H+ TGE + + +++F+ K + + ++++S ++ S
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD------ 59
Query: 716 SMTIGTLVLLVHDCADIFLEAAKMAKYAKFDKTCEILFLAFTFLW-----------LFTR 764
GTL L L + KF + E+L + + FL + TR
Sbjct: 60 -AVSGTLRLF-----WTLLSKQEEM-VQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 765 NYIFPFWIIRSTALDAPKIANTMFPAYYIFNGLLILLFILHLFWTRLIMKIAVQYFNAGE 824
YI D N +F Y + L L R + + G
Sbjct: 111 MYI--------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----GV 158
Query: 825 A-QGKPSVLVKFCESSWRCIYYFFSFG-----FGLVCLWDK--EWLWN----MDTCWVNY 872
GK + + S++ + F + E L +D W +
Sbjct: 159 LGSGK-TWVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 873 PHQS--VPSDVWW------YYMISLSFYYSLAVSQFFDVKRKDFWQMFLHHICTICLLS- 923
S + + + S + L V +V+ W F C I L +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLS-CKILLTTR 273
Query: 924 FSWICN-LTRIGTLVLLVHDCADIFLEAAKMAKYAKF---------DKTCEILFLAFTFL 973
F + + L+ T + + + + K+ + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 974 WLFTRNYIFPFWIIRRKKSIEIWSYLNLELLHQKVGDDLRSSSSGE 1019
R+ + + W ++N + L + L E
Sbjct: 334 AESIRD-----GLAT----WDNWKHVNCDKLTTIIESSLNVLEPAE 370
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 48.7 bits (117), Expect = 7e-08
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+ TG+KP+ C C F Q L++H H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 46.4 bits (111), Expect = 5e-07
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 643 YRCTYCGKQFGMSWNLKTHLR-VHTGEKPFAC 673
Y C CGK F + +L H R HTGEKP
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.6 bits (118), Expect = 1e-07
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
C GK F + L H+RVHTGEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 42.3 bits (99), Expect = 5e-05
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 643 YRCTYCGKQFGMSWNLKTHL-RVHTGEKPFA--------CRLCVAMFKQKAHLLKHL 690
C + F L TH+ H G C FK K L+ H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 34.9 bits (80), Expect = 0.019
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 664 VHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
+ + + C F L+ H+ H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 636 NVGSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEK 669
+ G +++ C CGK +G + +L+ HLR HTGE+
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 46.9 bits (112), Expect = 3e-07
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
R TG KPF C C F + HL H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 31.9 bits (73), Expect = 0.047
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVH 665
+ ++C C + F S +L H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 49.1 bits (118), Expect = 6e-07
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 313 PSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLL----EEARFPLGS 368
LADE+ +++ TD + G+ AH+ +LA+ SP+ + EE++ +
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVA-GQEFQAHKAILAARSPVFSAMFEHEMEESK---KN 65
Query: 369 PVYIQFPDIKVFHMKTILHFLYTGQASV 396
V I D++ K ++ F+YTG+A
Sbjct: 66 RVEIN--DVEPEVFKEMMCFIYTGKAPN 91
Score = 48.3 bits (116), Expect = 1e-06
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 403 PSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLL----EEARFPLGS 458
LADE+ +++ TD + G+ AH+ +LA+ SP+ + EE++ +
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVA-GQEFQAHKAILAARSPVFSAMFEHEMEESK---KN 65
Query: 459 PVYIQFPDIKVFHMKTILHFLYTGQA 484
V I D++ K ++ F+YTG+A
Sbjct: 66 RVEIN--DVEPEVFKEMMCFIYTGKA 89
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 46.3 bits (110), Expect = 7e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 556 GIKNIKKKAAPYNEVLSTAYSKSSKW-KHKDITALAKQLDWTER 598
G A P N +L ++ +K K + L+KQLDW R
Sbjct: 1 GSSGSSGTAQP-NAILEKVFTAITKHPDEKRLEGLSKQLDWDVR 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.3 bits (108), Expect = 1e-06
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 661 HLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
T K + C C F + HL +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 42.6 bits (101), Expect = 9e-06
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C CGK F ++L H ++HT + +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 45.3 bits (108), Expect = 5e-06
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 323 FDSENCTDISMIC---ERGEILHAHRLVLASASPLIKRL----LEEARFPLGSPVYIQFP 375
F++E D+ + + AH+ VLA S + + L E + S ++I
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK----SEIHIP-- 56
Query: 376 DIKVFHMKTILHFLYTGQASV 396
D++ +L ++Y+ + +
Sbjct: 57 DVEPAAFLILLKYMYSDEIDL 77
Score = 44.5 bits (106), Expect = 1e-05
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 413 FDSENCTDISMIC---ERGEILHAHRLVLASASPLIKRL----LEEARFPLGSPVYIQFP 465
F++E D+ + + AH+ VLA S + + L E + S ++I
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK----SEIHIP-- 56
Query: 466 DIKVFHMKTILHFLYTGQ 483
D++ +L ++Y+ +
Sbjct: 57 DVEPAAFLILLKYMYSDE 74
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 45.1 bits (106), Expect = 7e-06
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 655 SWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 690
+ K + + TG F C+ C A + L H+
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 39
Score = 39.7 bits (92), Expect = 6e-04
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 640 AREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVIS 699
A ++RC C + L H+ TG + + R+++
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHET-----DNNNPKRWSKPRKRSLLE 70
Query: 700 SVNDDGNSSHFNCCFCS 716
+ C +C
Sbjct: 71 MEGKEDAQKVLKCMYCG 87
Score = 32.0 bits (72), Expect = 0.25
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 610 HTNHEHEDTNSTNEDMISKSSCTTSNNVGSA-------REYRCTYCGKQFGMSWNLKTHL 662
T H +D + T+ + + S ++ + +C YCG F +L H+
Sbjct: 41 ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Query: 663 --RVHTGEKPF 671
H +
Sbjct: 101 IKTKHYQKVSG 111
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.9 bits (105), Expect = 8e-06
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
C YC +F + H K C C+ FK + +H VH
Sbjct: 41 NAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.3 bits (100), Expect = 1e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFAC 673
Y C C + F + L H ++HT + +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.2 bits (97), Expect = 3e-05
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 663 RVHTGEKPFACRLCVAMFKQKAHLLKH 689
+GEKP++C C F L++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 47.6 bits (113), Expect = 1e-05
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 391 TGQASVPYKLHHPS-LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLL 449
+GQ ++ LADE+ +++ TD + G+ AH+ +LA+ SP+ +
Sbjct: 146 SGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA-GQEFQAHKAILAARSPVFSAMF 204
Query: 450 E-EARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQA 484
E E + V I D++ K ++ F+YTG+A
Sbjct: 205 EHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKA 238
Score = 47.2 bits (112), Expect = 2e-05
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 295 VCDKNSPGHLTLKYKLHHPS-LADEVRQWFDSENCTDISMICERGEILHAHRLVLASASP 353
N G T+ LADE+ +++ TD + G+ AH+ +LA+ SP
Sbjct: 140 QDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA-GQEFQAHKAILAARSP 198
Query: 354 LIKRLLE-EARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASV 396
+ + E E + V I D++ K ++ F+YTG+A
Sbjct: 199 VFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAPN 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 1e-05
Identities = 89/521 (17%), Positives = 139/521 (26%), Gaps = 187/521 (35%)
Query: 22 LSNPEVHN-ESKSPENSHKPLRKSSSLVESSSEEEVMRS-TSAEKIATRLQQEIENQALF 79
L ++H +K + + L K+ L+ ++ +A +A R + N ALF
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELI---------KNYITARIMAKRPFDKKSNSALF 146
Query: 80 Y--RKRKSR-------------YMD-----Y--YNSNTIDDVEEQRK-LQEKVQQQTAPE 116
+ ++ Y + Y Y+ D ++ + L E ++ E
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 117 NYVVMPHRKRRPGFH-----NSPAQNPP-----FIPFS-PSYIDEISFRHYRSPHLLSSS 165
G + +P+ P IP S P I I HY L
Sbjct: 207 KV--FTQ-----GLNILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGF 258
Query: 166 NPPYLMDNPSKTPPHPGVLLP----------NSVEEIVVK---------YRPPSEEGSPI 206
P L H L+ S V K R E P
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPN 316
Query: 207 Q--RPASPRYGGIGNNDAPWGPWSLCQTGGDSSTPDLS-KGSCR-------RKCNSK--Q 254
P+ N P +P LS + K NS
Sbjct: 317 TSLPPSILEDSLENNEGVP--------------SPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 255 RPRITWLCLIGNADLAFT-TPPPRIHPSYRSHPPTLMKFRLVCDKNSPGHLTLKYKLHHP 313
++ + L+ N + PP+ +L L TL+ K P
Sbjct: 363 GKQVE-ISLV-NGAKNLVVSGPPQ----------SLYGLNL----------TLR-KAKAP 399
Query: 314 SLADEVRQWFDSENCTDISMICERGEILHA---------HRLVLASASPLIKRLLEEARF 364
S D+ R F ER H +L AS LI + L +
Sbjct: 400 SGLDQSRIPFS-----------ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 365 PLGSPVYIQFPDIKVFHMKTILHFLYTGQ------ASVPYKLHHPSLADEVRQ----WFD 414
+ IQ P V+ T + G S+ + D + + W
Sbjct: 449 SF-NAKDIQIP---VYD--T-----FDGSDLRVLSGSIS-----ERIVDCIIRLPVKW-- 490
Query: 415 SENCTDISMICERGEILHAHRLVL-----ASASPLIKRLLE 450
E T H L + L R +
Sbjct: 491 -ETTTQFK-------ATHI--LDFGPGGASGLGVLTHRNKD 521
Score = 48.1 bits (114), Expect = 2e-05
Identities = 109/633 (17%), Positives = 180/633 (28%), Gaps = 225/633 (35%)
Query: 14 SSTPVNLSLSNPEVHNESKSPENSHKP---LRKS--SSLVE-----------SSSEEEVM 57
S+ P L+LS+ + + P S L++ L E ++ E V
Sbjct: 5 STRP--LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 58 R-----STSAEKIATRLQQEIENQAL--FYRKRKSRYMDYYNSNTI---------DDVEE 101
+ S+ E ++ N L F Y N I ++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-------CYLEGNDIHALAAKLLQENDTT 115
Query: 102 QRKLQEKVQQQTAPENYVVMPHRKRRPG--------FHNSPAQNPPFIP-F-----SPSY 147
K +E ++ NY+ +RP F N + F + Y
Sbjct: 116 LVKTKELIK------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 148 IDEIS--FRHYR----------SPHL--LSSSN---PPYL---------MDNPSKTPPHP 181
+E+ ++ Y + L L + ++NPS TP
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 182 GVLL--PNSVEEIVV-------------KYRPPSEEGSPIQRPASPRYGGIGNNDAPWGP 226
LL P S I V + P E + A+ G+
Sbjct: 230 -YLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKGATGHSQGL--------V 278
Query: 227 WSLCQTGGDSSTPDLSKGSCRRKCNSKQRPRITWLCLIG-NADLAF--TTPPPRIHPSYR 283
++ DS RK IT L IG A+ T+ PP I
Sbjct: 279 TAVAIAETDSW-ESFFVSV--RKA-------ITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 284 SH---PPTLMKFRLVCDKNSPGHLTLKYKLHHPSLADEVRQWFDSENCTDISMICERGEI 340
+ P+ M L + + ++ + +IS++
Sbjct: 329 ENNEGVPSPM---LSISNLTQEQVQ--------DYVNKTNSHLPAGKQVEISLVN----- 372
Query: 341 LHAHR-LVLA-SASPL--IKRLLEEARFPLGSPVY-IQFPDIK-VFHMKTILHFLYTGQA 394
+ LV++ L + L +A+ P G I F + K F + FL
Sbjct: 373 --GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR----FL---PV 423
Query: 395 SVPYKLHHPSLADEVRQWFDSENCTDISMICERGEILHAHRLVLASASPLIKRLLEEARF 454
+ P+ H L L AS LI + L +
Sbjct: 424 ASPF---HSHL--------------------------------LVPASDLINKDLVKNNV 448
Query: 455 PLGSPVYIQFPDIKVFHMKTILHFLYTG---QAYMG-IVRTVLDGFWNPNIWLPPNITWS 510
+ IQ P V+ T + G + G I ++D I P + W
Sbjct: 449 SF-NAKDIQIP---VYD--T-----FDGSDLRVLSGSISERIVD-----CIIRLP-VKW- 490
Query: 511 DLEPNDKIQYADHRHL--FYPLPMA-LGMLLLR 540
+ H+ F P + LG+L R
Sbjct: 491 -----ETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 47.4 bits (112), Expect = 3e-05
Identities = 84/625 (13%), Positives = 149/625 (23%), Gaps = 256/625 (40%)
Query: 140 FIPFSPSYIDEISFRHYRS--PHLLSSSNPPYLMDNP-----SKTPPHPGVLLPNSVEEI 192
F+ + S ++ + L+ YL N +K L + E I
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 193 VVKYRPPSEEGSPIQRPASPR---------------YGGIGNNDAPWGPWSLCQTGGDSS 237
P + ++ +GG GN D +
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF------------- 170
Query: 238 TPDLSKGSCRRKCNSKQRPRITWLCLIGNADLAFTTPPPRIHPSYRSHPPTLMKF-RLVC 296
+L DL + T + + TL + R
Sbjct: 171 -EEL-------------------------RDL-YQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 297 DKNSPGHLTLKYKLHHPSLADEVRQWFDSENCT-DISMICERGEILHAHRLVLASA--S- 352
D + + +W ++ + T D L S S
Sbjct: 204 DAEK----------VFTQGLN-ILEWLENPSNTPDKD--------------YLLSIPISC 238
Query: 353 PLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPYKLHHPSLADEVRQW 412
PLI IQ H++ T + E+R +
Sbjct: 239 PLI--------------GVIQL-----------AHYVVTAKLL---GFTP----GELRSY 266
Query: 413 FDSENCTDISMICERGEILHAHRLVLA---SASPLIKRLLEEAR------FPLGSPVYIQ 463
+G H+ LV A + + + R F +G Y
Sbjct: 267 L-------------KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 464 FPDIKVFHMKTILHFLYTGQ---AYM----GI----VRTVLDGFWNPNIWLPPNITWSDL 512
+P+ + L + + M + V+ ++ N LP
Sbjct: 314 YPNT-SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---NSHLPAG------ 363
Query: 513 EPNDKIQYADHRHLFYPL------------PMALGMLLLRFFLEKYWFAPIGASVG-IKN 559
+ + L P +L L L L K AP G I
Sbjct: 364 -----------KQVEISLVNGAKNLVVSGPPQSLYGLNLT--LRKA-KAPSGLDQSRIPF 409
Query: 560 IKKK----------AAPYN---------EVLSTAYSKSSKWKHKD--------------- 585
++K A+P++ + + + KD
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 586 ------ITALAKQL-----DWTERNLNSLS-----GPGG--GHTNHEHEDTNSTNEDMIS 627
+ + W + GPGG G H + + T +I
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 628 KSSCTTSNNVGSAREYRCTYCG-KQ 651
+ ++ +Y G KQ
Sbjct: 530 AGTL----DINPDDDY-----GFKQ 545
Score = 30.4 bits (68), Expect = 4.3
Identities = 55/390 (14%), Positives = 99/390 (25%), Gaps = 152/390 (38%)
Query: 657 NLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCS 716
+L+ L V T A +L + K L + DD ++
Sbjct: 15 SLEHVLLVPTASFFIASQL-------QEQFNKILPEPTEGFAA---DDEPTT-------- 56
Query: 717 MTIGTLVLLVHDCADIFLE-AAKMAKYAKFDKTCEILFLAFTFLWLFTRNYIF---PFWI 772
L+ FL + + + +K + ++L L T F Y+
Sbjct: 57 ----PAELVGK-----FLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGND---- 100
Query: 773 IRSTALDAPKIANTMFPAYYIFNGLLILLFILHLFWTRLIMKIAVQYFNAGEAQGKP--- 829
I + A + +T T+ ++K Y A +P
Sbjct: 101 IHALAAKLLQENDTTLVK------------------TKELIKN---YITARIMAKRPFDK 139
Query: 830 ---SVLVKFCESSWRCIYYFFSFGFG--------LVCLWD------KEWLWNMDTC---- 868
S L + + F G G L L+ + +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 869 -------------------WVNYPHQSVPSDVWWYYMISLSFYYSL---AVSQFFDVKRK 906
W+ P + P Y++S+ S V Q
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENP-SNTPDK---DYLLSIPI--SCPLIGVIQ------- 245
Query: 907 DFWQMFLHHICTICLLS-------FSWICNLTRIGTLVLL-----VHDCADIFLEAAKMA 954
L H L S++ T ++ D + F + + A
Sbjct: 246 ------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 955 KYAKFDKTCEILFLAFTFLWLFTRNY-IFP 983
+LF ++ R Y +P
Sbjct: 300 --------ITVLF------FIGVRCYEAYP 315
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (97), Expect = 2e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 660 THLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+ GE PF C C +F Q+ +L++H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 38.3 bits (89), Expect = 4e-04
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
++C+ C + F L H R H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 40.8 bits (96), Expect = 3e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
R + C C + F +LK H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (61), Expect = 1.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 669 KPFACRLCVAMFKQKAHLLKHL 690
+ F C +C F ++ HL +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 43.4 bits (103), Expect = 4e-05
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D ++ G + AH VLA S + + + GS + P +L F
Sbjct: 25 CDATLDVG-GLVFKAHWSVLACCSHFFQ-----SLYGDGSGGSVVLPAGFAEIFGLLLDF 78
Query: 389 LYTGQASV 396
YTG ++
Sbjct: 79 FYTGHLAL 86
Score = 43.0 bits (102), Expect = 5e-05
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D ++ G + AH VLA S + + + GS + P +L F
Sbjct: 25 CDATLDVG-GLVFKAHWSVLACCSHFFQ-----SLYGDGSGGSVVLPAGFAEIFGLLLDF 78
Query: 479 LYTGQ 483
YTG
Sbjct: 79 FYTGH 83
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 40.3 bits (95), Expect = 5e-05
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 641 REYRCTY--CGKQFGMSWNLKTHLRVHTGEK 669
R + CT+ CGK+F S L+ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 43.0 bits (102), Expect = 5e-05
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D ++ G + AH VLA S + + G+ + P +L F
Sbjct: 26 CDATLDVG-GLVFKAHWSVLACCSHFFQ-----RIYGDGTGGSVVLPAGFAEIFGLLLDF 79
Query: 389 LYTGQASV 396
YTG ++
Sbjct: 80 FYTGHLAL 87
Score = 43.0 bits (102), Expect = 7e-05
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D ++ G + AH VLA S + + G+ + P +L F
Sbjct: 26 CDATLDVG-GLVFKAHWSVLACCSHFFQ-----RIYGDGTGGSVVLPAGFAEIFGLLLDF 79
Query: 479 LYTGQ 483
YTG
Sbjct: 80 FYTGH 84
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 41.2 bits (96), Expect = 7e-05
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 653 GMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
G S + ++H G++ C C +F +++ L +
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 41.2 bits (96), Expect = 7e-05
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKH 689
+C+ CG F + K C C Q+A L K
Sbjct: 19 QKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Score = 37.3 bits (86), Expect = 0.001
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 632 TTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFA 672
+ + + C C K L +G+K
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 42.7 bits (101), Expect = 1e-04
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 397 PYKLHHPSLADEVRQWFDS----ENCTDISMICERGEILHAHRLVLASASPLIKRLL-EE 451
+ P A + + S D ++ + EI + +LA+ASP I+ L
Sbjct: 22 SMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEI-PVQKNILAAASPYIRTKLNYN 80
Query: 452 ARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQ 483
GS I+ I V M+ IL ++++GQ
Sbjct: 81 PPKDDGSTYKIELEGISVMVMREILDYIFSGQ 112
Score = 42.7 bits (101), Expect = 1e-04
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLL-EEARFPLGSPVYIQFPDIKVFHMKTILH 387
D ++ + EI + +LA+ASP I+ L GS I+ I V M+ IL
Sbjct: 48 CDAHLVLDGEEI-PVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILD 106
Query: 388 FLYTGQASV 396
++++GQ +
Sbjct: 107 YIFSGQIRL 115
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 41.8 bits (99), Expect = 1e-04
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D+ ++ + + HAHR VLA S + + L + + + + IL +
Sbjct: 29 CDVVIMVD-SQEFHAHRTVLACTSKMFEILFH------RNSQHYTLDFLSPKTFQQILEY 81
Query: 389 LYTGQASV 396
YT
Sbjct: 82 AYTATLQA 89
Score = 41.0 bits (97), Expect = 2e-04
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D+ ++ + + HAHR VLA S + + L + + + + IL +
Sbjct: 29 CDVVIMVD-SQEFHAHRTVLACTSKMFEILFH------RNSQHYTLDFLSPKTFQQILEY 81
Query: 479 LYTGQ 483
YT
Sbjct: 82 AYTAT 86
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 39.0 bits (90), Expect = 2e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ Y C +C +QF L+ H+R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D + E AH LVLA S + R + F +L+F
Sbjct: 31 CDTLITVGSQEF-PAHSLVLAGVSQQL-----GRRG---QWALGEGISPSTF--AQLLNF 79
Query: 389 LYTGQASV 396
+Y +
Sbjct: 80 VYGESVEL 87
Score = 40.7 bits (96), Expect = 3e-04
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D + E AH LVLA S + R + F +L+F
Sbjct: 31 CDTLITVGSQEF-PAHSLVLAGVSQQL-----GRRG---QWALGEGISPSTF--AQLLNF 79
Query: 479 LYTGQ 483
+Y
Sbjct: 80 VYGES 84
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 41.1 bits (97), Expect = 2e-04
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 329 TDISMICERGEILHAHRLVLASASP----LIKRLLEEARFPLGSPVYIQFPDIKVFHMKT 384
D+++I ER E AHR VLA+ S + + V ++
Sbjct: 33 CDVTLIVERKEF-RAHRAVLAACSEYFWQALVGQTKN------DLVVSLPEEVTARGFGP 85
Query: 385 ILHFLYTGQASV 396
+L F YT + +
Sbjct: 86 LLQFAYTAKLLL 97
Score = 40.3 bits (95), Expect = 4e-04
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 419 TDISMICERGEILHAHRLVLASASP----LIKRLLEEARFPLGSPVYIQFPDIKVFHMKT 474
D+++I ER E AHR VLA+ S + + V ++
Sbjct: 33 CDVTLIVERKEF-RAHRAVLAACSEYFWQALVGQTKN------DLVVSLPEEVTARGFGP 85
Query: 475 ILHFLYTGQ 483
+L F YT +
Sbjct: 86 LLQFAYTAK 94
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 41.0 bits (97), Expect = 3e-04
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 394 ASVPYKLHHPSLADEVRQWFDS----ENCTDISMICERGEILHAHRLVLASASP----LI 445
S ++ A +V + + TD+ ++ E AH+ VL + S +
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVS-REQFRAHKTVLMACSGLFYSIF 59
Query: 446 KRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQ 483
L+ V P+I +L F+YT +
Sbjct: 60 TDQLKRNL-----SVINLDPEINPEGFNILLDFMYTSR 92
Score = 40.7 bits (96), Expect = 3e-04
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 329 TDISMICERGEILHAHRLVLASASP----LIKRLLEEARFPLGSPVYIQFPDIKVFHMKT 384
TD+ ++ E AH+ VL + S + L+ V P+I
Sbjct: 30 TDVVIVVS-REQFRAHKTVLMACSGLFYSIFTDQLKRNL-----SVINLDPEINPEGFNI 83
Query: 385 ILHFLYTGQASV 396
+L F+YT + ++
Sbjct: 84 LLDFMYTSRLNL 95
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 40.6 bits (96), Expect = 3e-04
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRL----LEEARFPLGSPVYIQFPDIKVFHMKT 384
D+ ++ E G HR VLA+ S K+L + + + +
Sbjct: 26 CDVVILVE-GREFPTHRSVLAACSQYFKKLFTSGAVVDQ-----QNVYEIDFVSAEALTA 79
Query: 385 ILHFLYTGQASV 396
++ F YT +V
Sbjct: 80 LMDFAYTATLTV 91
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRL----LEEARFPLGSPVYIQFPDIKVFHMKT 474
D+ ++ E G HR VLA+ S K+L + + + +
Sbjct: 26 CDVVILVE-GREFPTHRSVLAACSQYFKKLFTSGAVVDQ-----QNVYEIDFVSAEALTA 79
Query: 475 ILHFLYTGQ 483
++ F YT
Sbjct: 80 LMDFAYTAT 88
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 37.9 bits (88), Expect = 4e-04
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 638 GSAREYRCTY--CGKQFGMSWNLKTHLRVHTGEK 669
+ + C + C K F +N+++H++ H ++
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D + + + G AH+ VLA+ S K L + + +L F
Sbjct: 28 CDCTFVVD-GVHFKAHKAVLAACSEYFKMLFV------DQKDVVHLDISNAAGLGQVLEF 80
Query: 389 LYTGQASV 396
+YT + S+
Sbjct: 81 MYTAKLSL 88
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D + + + G AH+ VLA+ S K L + + +L F
Sbjct: 28 CDCTFVVD-GVHFKAHKAVLAACSEYFKMLFV------DQKDVVHLDISNAAGLGQVLEF 80
Query: 479 LYTGQ 483
+YT +
Sbjct: 81 MYTAK 85
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 40.3 bits (95), Expect = 5e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D+S++ + G AHR VLA++S + L +R S V ++ + IL F
Sbjct: 34 CDVSVVVK-GHAFKAHRAVLAASSSYFRDLFNNSR----SAVVELPAAVQPQSFQQILSF 88
Query: 389 LYTGQASV 396
YTG+ S+
Sbjct: 89 CYTGRLSM 96
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D+S++ + G AHR VLA++S + L +R S V ++ + IL F
Sbjct: 34 CDVSVVVK-GHAFKAHRAVLAASSSYFRDLFNNSR----SAVVELPAAVQPQSFQQILSF 88
Query: 479 LYTGQ 483
YTG+
Sbjct: 89 CYTGR 93
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 39.9 bits (94), Expect = 6e-04
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 307 KYKLHHPSLADEVRQWFDS----ENCTDISMICERGEILHAHRLVLASASPLIKRLL--- 359
+ + V + + D+++ E G+ AHR VLA+ S +
Sbjct: 4 VFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVE-GQRFRAHRSVLAACSSYFHSRIVGQ 62
Query: 360 EEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASV 396
+ + ++ V + ++ F YT + +
Sbjct: 63 ADGELNI-----TLPEEVTVKGFEPLIQFAYTAKLIL 94
Score = 39.1 bits (92), Expect = 0.001
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLL---EEARFPLGSPVYIQFPDIKVFHMKTI 475
D+++ E G+ AHR VLA+ S + + + ++ V + +
Sbjct: 30 CDVTIFVE-GQRFRAHRSVLAACSSYFHSRIVGQADGELNI-----TLPEEVTVKGFEPL 83
Query: 476 LHFLYTGQ 483
+ F YT +
Sbjct: 84 IQFAYTAK 91
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 39.6 bits (93), Expect = 6e-04
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D+++I E AH+ +L+++S F + V ++ I+ IL++
Sbjct: 32 CDVTVIVE-DRKFRAHKNILSASSTYFH-----QLFSVAGQV-VELSFIRAEIFAEILNY 84
Query: 389 LYTGQ 393
+Y+ +
Sbjct: 85 IYSSK 89
Score = 39.6 bits (93), Expect = 6e-04
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D+++I E AH+ +L+++S F + V ++ I+ IL++
Sbjct: 32 CDVTVIVE-DRKFRAHKNILSASSTYFH-----QLFSVAGQV-VELSFIRAEIFAEILNY 84
Query: 479 LYTGQ 483
+Y+ +
Sbjct: 85 IYSSK 89
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 37.1 bits (85), Expect = 6e-04
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTG 667
R Y C+ CGK+F + ++TH RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 39.5 bits (93), Expect = 7e-04
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARF--PLGSPVYIQFPDIKVFHMKTIL 386
D +++ + AHR VLAS S A + + V++ +K + +L
Sbjct: 23 CDCTIVIGEFQF-KAHRNVLASFSEYFG-----AIYRSTSENNVFLDQSQVKADGFQKLL 76
Query: 387 HFLYTGQASV 396
F+YTG ++
Sbjct: 77 EFIYTGTLNL 86
Score = 39.1 bits (92), Expect = 8e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARF--PLGSPVYIQFPDIKVFHMKTIL 476
D +++ + AHR VLAS S A + + V++ +K + +L
Sbjct: 23 CDCTIVIGEFQF-KAHRNVLASFSEYFG-----AIYRSTSENNVFLDQSQVKADGFQKLL 76
Query: 477 HFLYTGQ 483
F+YTG
Sbjct: 77 EFIYTGT 83
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 37.1 bits (85), Expect = 7e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
S + + C YC K F +L+ HLR+HT EK
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 40.7 bits (96), Expect = 0.001
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 329 TDISMICERGEILHAHRLVLASASP------LIKRLLEEARFPLGSPVYIQFPDIKVFHM 382
D ++ + EI + +LA+ASP ++ I+ I V M
Sbjct: 32 CDAHLVLDGEEI-PVQKNILAAASPYIRTKLNYNPPKDDGSTYK-----IELEGISVMVM 85
Query: 383 KTILHFLYTGQASV 396
+ IL ++++GQ +
Sbjct: 86 REILDYIFSGQIRL 99
Score = 40.7 bits (96), Expect = 0.001
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 392 GQASVPYKLHHPSLADEVRQWFDS----ENCTDISMICERGEILHAHRLVLASASP---- 443
G + + P A + + S D ++ + EI + +LA+ASP
Sbjct: 1 GSMAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEI-PVQKNILAAASPYIRT 59
Query: 444 --LIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQ 483
++ I+ I V M+ IL ++++GQ
Sbjct: 60 KLNYNPPKDDGSTYK-----IELEGISVMVMREILDYIFSGQ 96
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 329 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 388
D++++ E G+ AHR VLA+ S + + + +K F + ++ F
Sbjct: 37 CDVTVLVE-GQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGF--EPLIQF 93
Query: 389 LYTGQASV 396
YT + +
Sbjct: 94 AYTAKLIL 101
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 419 TDISMICERGEILHAHRLVLASASPLIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHF 478
D++++ E G+ AHR VLA+ S + + + +K F + ++ F
Sbjct: 37 CDVTVLVE-GQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGF--EPLIQF 93
Query: 479 LYTGQ 483
YT +
Sbjct: 94 AYTAK 98
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 36.0 bits (82), Expect = 0.002
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISS 700
+GEKP++C +C FK+K + H+ S +V S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 35.6 bits (81), Expect = 0.003
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
S + Y+C C + NL HLR HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.1 bits (80), Expect = 0.004
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 665 HTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVIS 699
+G++PF CR+C++ F KA+ +HL VH + +S
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL-KVHTDTLS 35
Score = 28.2 bits (62), Expect = 1.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHT 666
R + C C F N HL+VHT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 38.8 bits (91), Expect = 0.005
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 397 PYKLHHPSLADEVRQWFDS----ENCTDISMICER--GEILHAHRLVLASASPLIKRL-- 448
S E+ + DI++ G AHR VLA+A+ L
Sbjct: 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLS 66
Query: 449 --LEEARFPLGSPVYIQFPDIKVFH----MKTILHFLYTGQ 483
E+R V ++ + ++ ++ ++YTG+
Sbjct: 67 GQFSESR---SGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR 104
Score = 38.4 bits (90), Expect = 0.009
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 329 TDISMICER--GEILHAHRLVLASASPLIKRL----LEEARFPLGSPVYIQFPDIKVFH- 381
DI++ G AHR VLA+A+ L E+R V ++ +
Sbjct: 33 CDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESR---SGRVEMRKWSSEPGPE 89
Query: 382 ---MKTILHFLYTGQASV 396
++ ++ ++YTG+ V
Sbjct: 90 PDTVEAVIEYMYTGRIRV 107
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 32.4 bits (73), Expect = 0.036
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 645 CTYCGKQFGMSWNLKTHLRVHTGEK 669
C CGK F + +L H+R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 36.6 bits (84), Expect = 0.051
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 133 SPAQNPPFIPFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPSKTPPHPGVLLPNS--VE 190
SP +P + P SPSY SP S ++P Y +PS +P P P S
Sbjct: 1642 SP-TSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPS-YSPTSPSYS 1698
Query: 191 EIVVKYRPPSEEGSPIQRPASPRYGGIGNNDAPWGP-WSLCQTGGDSSTPDLSKGS 245
Y P SP P SP Y + +P P +S ++P S S
Sbjct: 1699 PTSPSYSP----TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
Score = 30.4 bits (68), Expect = 4.3
Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 30/103 (29%)
Query: 133 SPAQNPPFIPFSPSYIDEISFRHYRSPH------LLSSSNPPYLMDNPSKTPPHPGVLLP 186
SP +P + P SPSY SP S ++P Y +PS +P P
Sbjct: 1593 SPT-SPSYSPTSPSY-------SATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----- 1639
Query: 187 NSVEEIVVKYRPPSEE---GSPIQRPASPRYGGIGNNDAPWGP 226
Y P S SP P SP Y + +P P
Sbjct: 1640 --------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 30.0 bits (67), Expect = 5.7
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 20/83 (24%)
Query: 133 SPAQNPPFI-PFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPSKTPPHPGVLLPNSVEE 191
SP PF SP Y SP S++P Y+ +PS +P P
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSP--GYSTSPAYMPSSPSYSPTSPS--------- 1584
Query: 192 IVVKYRPPSEEGSPIQRPASPRY 214
Y P SP P SP Y
Sbjct: 1585 ----YSP----TSPSYSPTSPSY 1599
Score = 29.7 bits (66), Expect = 6.3
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 130 FHNSPAQNPPFIPFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPS---KTPPHPGVLLP 186
+ SP + F+ SP D +F SP + S + P+ GV P
Sbjct: 1486 YERSPMVDSGFVG-SP---DAAAF----SPLVQGGSEGREGFGDYGLLGAASPYKGVQSP 1537
Query: 187 NSVEEIVVKYRPPSEEGSPIQRPASPRYG 215
P SP P+SP Y
Sbjct: 1538 GYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.074
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 30/99 (30%)
Query: 23 SNPEVHNESKSPENSHKPLRK-----SSSLVESSSEEEVMRSTSAEKIATRLQQEIENQA 77
+ E PE +RK L E + +VM ++ + ++++E
Sbjct: 76 QADRLTQE---PE----SIRKWREEQRKRLQELDAASKVME----QEWREKAKKDLEE-- 122
Query: 78 LFYRKRKSRYMDYYNSNTIDDVEEQRKLQEK--VQQQTA 114
+ +++ ++ + ++ +K QQ A
Sbjct: 123 -WNQRQS---------EQVEKNKINNRIADKAFYQQPDA 151
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.8 bits (82), Expect = 0.094
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 19/131 (14%)
Query: 135 AQNPPFIPFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPSKTPPHPGVLLPNSVEEIVV 194
+P + P SPSY S + + S ++P Y +PS +P P P S
Sbjct: 1614 PTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSP----- 1666
Query: 195 KYRPPSEEGSPIQRPASPRYGGIGNNDAPWGP--------WSLCQTGGDSSTPDLSKGSC 246
Y P S P P SP Y + +P P +S G +P S
Sbjct: 1667 SYSPTS----PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQD 1722
Query: 247 RRKCNSKQRPR 257
+K N + R
Sbjct: 1723 EQKHNENENSR 1733
Score = 31.2 bits (70), Expect = 2.4
Identities = 18/99 (18%), Positives = 22/99 (22%), Gaps = 9/99 (9%)
Query: 128 PGFHNSPAQNPPFIPFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPSKTPPHPGVLLPN 187
P + S N SP + S SN + G
Sbjct: 1472 PYSNESGLVNADLDVKDELM---------FSPLVDSGSNDAMAGGFTAYGGADYGEATSP 1522
Query: 188 SVEEIVVKYRPPSEEGSPIQRPASPRYGGIGNNDAPWGP 226
P SP P SP Y +P P
Sbjct: 1523 FGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSP 1561
Score = 31.2 bits (70), Expect = 2.5
Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 19/105 (18%)
Query: 128 PGFHNSPAQNPPFIPFSPSYIDEI------SFRHYRSPHLLSSSNPPYLMDNPSKTPPHP 181
G N+ + FSP F Y + P+ + T P
Sbjct: 1477 SGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADY-GEATSPFGAYGEAPTSPGF 1535
Query: 182 GVLLPNSVEEIVVKYRPPSEEGSPIQRPASPRYGGIGNNDAPWGP 226
GV P + P SP P SP Y + +P P
Sbjct: 1536 GVSSPG--------FSP----TSPTYSPTSPAYSPTSPSYSPTSP 1568
Score = 30.1 bits (67), Expect = 5.5
Identities = 22/109 (20%), Positives = 31/109 (28%), Gaps = 31/109 (28%)
Query: 121 MPHRKRRPGFHNSPAQNPPFIPFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPSKTPPH 180
+ G SP P SP + S+P + +P+ +P
Sbjct: 1509 TAYGGADYGEATSPFGAYGEAPTSPGF---------------GVSSPGFSPTSPTYSPTS 1553
Query: 181 PGVLLPNSVEEIVVKYRPPSEEGSPIQ---RPASPRYGGIGNNDAPWGP 226
P Y P S SP P SP Y + +P P
Sbjct: 1554 PA-------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.13
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHT 666
+ ++C C K F S L H R+HT
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.8 bits (79), Expect = 0.18
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 602 SLSGPGGGHTNHEHEDTNSTNEDMISKSSCTTSNN--VGSAREYRCTYCGKQFGMSWNLK 659
++ GG + ++SK S Y+C C +L
Sbjct: 138 NVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLD 197
Query: 660 THLRVH 665
H+ H
Sbjct: 198 AHVASH 203
Score = 29.4 bits (65), Expect = 7.2
Identities = 15/149 (10%), Positives = 35/149 (23%), Gaps = 7/149 (4%)
Query: 552 GASVGIKNIKKKAAPYNEVLSTAYSKSSKWKHKDITALAKQLDWTERNLNSLSGPGGGHT 611
A + +KN + + ++ +
Sbjct: 68 SAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGI 127
Query: 612 NHEHEDTNSTNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPF 671
N+ +E + S N D S+ + + + +
Sbjct: 128 NNANELSRSGNVDNEGGSNQKPMSTRIAEA------TSAIVSKHPARVGLPPTASSGHGY 181
Query: 672 ACRLCVAMFKQKAHLLKHLCSVHRNVISS 700
C +C A+ L H+ + H +
Sbjct: 182 QCHVCSAVLFSPLDLDAHV-ASHGLHGNM 209
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 30.3 bits (67), Expect = 0.26
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 633 TSNNVGSARE-YRCTYCGKQFGMSWNLKTHLRVHTGE 668
+S + G+A+ C CGK F S L H +H GE
Sbjct: 2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta
motif, structural genomics, PSI, protein structure
initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Length = 207
Score = 32.9 bits (76), Expect = 0.31
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 345 RLVLASASPLIKRLLEEARFPLGSPVYIQFPDI 377
+++ ++S +L E + PDI
Sbjct: 11 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDI 43
Score = 32.9 bits (76), Expect = 0.31
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 435 RLVLASASPLIKRLLEEARFPLGSPVYIQFPDI 467
+++ ++S +L E + PDI
Sbjct: 11 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDI 43
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.7 bits (67), Expect = 0.35
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
R Y C++C ++F + L H+ VH ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.4 bits (70), Expect = 0.35
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 642 EYRCTYCGKQFGMSWN-LKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVH 694
C C + LK H+ ++ F C C + A + H+ + H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 29.8 bits (66), Expect = 1.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKPF 671
+ C +CGKQ +K H+ + P
Sbjct: 63 FTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 33.0 bits (76), Expect = 0.43
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 634 SNNV----GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACR 674
+ V G+ E C C K ++ + + P C
Sbjct: 142 NTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP 186
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 67
Score = 30.0 bits (67), Expect = 0.54
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 22/52 (42%)
Query: 644 RCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHR 695
RC C + + ++ +CR C +F C +HR
Sbjct: 17 RCFQCQTKLEL-----------VQQELGSCR-CGYVF----------CMLHR 46
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.65
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 639 SAREYRCTYCGKQFGMSWNLKTHLRVHTGE 668
S + + C CGK+F LK+H +HT +
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.5 bits (68), Expect = 0.66
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 636 NVGSAREYRCTYCGKQFGMSWNLKTH-LRVHTGEKPFACRL 675
NV Y C C L H L+ H GE+ F +
Sbjct: 44 NVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
Score = 30.5 bits (68), Expect = 0.69
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 657 NLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCCFCS 716
+ + + E + C+ C H+ S H NV+ + + + C C+
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-------YVCVECN 57
Query: 717 MTIGT 721
Sbjct: 58 FLTKR 62
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 32.1 bits (72), Expect = 0.72
Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 3/62 (4%)
Query: 632 TTSNNVGSAREYRCTYC---GKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLK 688
++ R Y K+ H + GEK + L
Sbjct: 167 RACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRG 226
Query: 689 HL 690
+
Sbjct: 227 PI 228
Score = 29.4 bits (65), Expect = 5.0
Identities = 2/44 (4%), Positives = 10/44 (22%)
Query: 626 ISKSSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
N + + + +L+ + + +
Sbjct: 192 SMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.94
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 641 REYRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ ++C CG+ F +L H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 30.9 bits (69), Expect = 1.3
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 53 EEEVMRSTSAEKIATRL---QQEIENQALFYRKRKSRYMDYYN------------SNTID 97
++++++ S E + +L Q+ ++++ Y + Y + TI
Sbjct: 3 QDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK 62
Query: 98 DVEEQRKLQEKVQQQTAPE 116
EEQ + QEK ++
Sbjct: 63 IFEEQGQTQEKSSKEYLER 81
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 31.2 bits (71), Expect = 1.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 638 GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
GS C CGK + K+ L H + C +C
Sbjct: 132 GSFAHCHCIGCGKVYPPQV-FKSKLAEHPIKDFVKCDVC 169
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 31.1 bits (70), Expect = 1.8
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 638 GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
GS C CGK + K+ L H + C +C
Sbjct: 140 GSFAHCHCIGCGKVYPPQV-FKSKLAEHPIKDFVKCDVC 177
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.1 bits (60), Expect = 2.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 669 KPFACRLCVAMFKQKAHLLKHLCSVH 694
K +AC LC F ++ L++H +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.8 bits (59), Expect = 2.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEKP 670
+ C C K+F S +L H+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 30.4 bits (69), Expect = 2.8
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 638 GSAREYRCTYCGKQFGMSW-----NLKTHLRVHTGEKPFACRLC 676
G+ C C Q+ LK R+ T K R C
Sbjct: 134 GNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.8 bits (59), Expect = 3.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 643 YRCTYCGKQFGMSWNLKTHLRVHTGEK 669
+ C C K+F S +L H+ +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 30.1 bits (68), Expect = 3.5
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 638 GSAREYRCTYCGKQFGMSW-----NLKTHLRVHTGEKPFACRLC 676
G+ C C Q+ LK R+ T K R C
Sbjct: 134 GNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRAC 177
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 29.8 bits (68), Expect = 3.6
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 634 SNNV----GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
S V GS + C C + + S ++ + GE P CR C
Sbjct: 111 SRRVLELHGSMDKLDCLDCHETYDWSEFVE---DFNKGEIP-RCRKC 153
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.5 bits (68), Expect = 3.6
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 14/119 (11%)
Query: 128 PGFHNSPA---QNPPFIPFSPSYIDEISFRHYRSPHLLSSSNPPYLMDNPS-----KTPP 179
P H S +P + S + ++SS P+ M P+ +
Sbjct: 36 PSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTG 95
Query: 180 HPGVLLPNSVEEIVVKYRPPSEEGSPIQRPASPRYGGIGNNDAPWGPWSLCQTGGDSST 238
P + P + +PP ++ PA P +C GD S+
Sbjct: 96 SPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN------MASFTKHICAICGDRSS 148
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics,
APC5865, hydrolase, PSI-2, protein STRU initiative; HET:
MSE; 1.50A {Agrobacterium tumefaciens str} SCOP:
c.69.1.36
Length = 249
Score = 29.9 bits (66), Expect = 3.7
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 162 LSSSNPPYLMDNPSKTPPHPG----VLLPNSVEEIVVKYRPPSEEGSPIQ--RPASPRYG 215
+ SS+ + + + G V+ + +Y+P E+ +PI P++G
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMPEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFG 60
Query: 216 GIGNNDAPWGP 226
G NN +
Sbjct: 61 GTMNNQIVYQL 71
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 29.8 bits (68), Expect = 3.7
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 634 SNNV----GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLC 676
S V G+ EY C C K++ + +K ++ + + P C C
Sbjct: 109 SKKVIELHGNVEEYYCVRCEKKYTVEDVIK---KLESSDVP-LCDDC 151
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 29.7 bits (66), Expect = 4.1
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 621 TNEDMISKSSCTTSNNVGSAREYRCTYCGKQFGMSW-NLKTHLRVH 665
+ S + + +C CG+ FG + LK HL+
Sbjct: 148 KIDTPTSNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEE 193
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 29.3 bits (66), Expect = 5.9
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 638 GSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFK 681
G+ CT C + F V P C +C + K
Sbjct: 135 GTFASATCTVCQRPFPGEDIRA---DVMADRVPR-CPVCTGVVK 174
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein
fragment, metal transporter protei divalent cations,
metal transport; 2.90A {Archaeoglobus fulgidus}
Length = 266
Score = 29.3 bits (66), Expect = 6.1
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 354 LIKRLLEEARFPLGSPVYIQFPDIKVFHMKTILHFLYTGQASVPYKLHHPSLADEVRQ-- 411
+ + ++ P +PV+ ++ + + Y ++ +L L VR
Sbjct: 6 IPATIKKKMALPPATPVFTGEKKVEETKITAAI---YDEKSVEFKELEVGELESVVRSAL 62
Query: 412 ------WFDSENCTDISMICERGEILHAHRLVL 438
W D D S+I + E L H L
Sbjct: 63 ALNKKLWIDVVGVHDESLIAKICEFLGIHPLAA 95
>1w0r_A Properdin, factor P; X-RAY scattering, analytical
ultracentrifugation, complement, thrombospondin type I
repeats, constrained modelling; NMR {Homo sapiens} PDB:
1w0s_A
Length = 442
Score = 29.6 bits (66), Expect = 6.7
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 223 PWGPWSLC-QTGGDSSTPDLSKGSCRRKCNSKQR 255
WG WS C + S + G R + R
Sbjct: 293 SWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGR 326
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA
replication, replication; HET: DNA MSE; 2.80A
{Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Length = 148
Score = 28.3 bits (63), Expect = 7.2
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 298 KNSPGHLTLKYKLHHPSLADEV--RQWFDSENCTDISMICERGEILHAH 344
K + + + + +P LA V + D + + E +
Sbjct: 14 KRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQ 62
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 26.7 bits (59), Expect = 7.4
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 25/67 (37%)
Query: 629 SSCTTSNNVGSAREYRCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLK 688
SS ++ R RCT C K+ G++ F CR C F
Sbjct: 2 SSGSSGQPSPPQRPNRCTVCRKRVGLT--------------GFMCR-CGTTF-------- 38
Query: 689 HLCSVHR 695
C HR
Sbjct: 39 --CGSHR 43
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.6 bits (58), Expect = 7.7
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 676 CVAMFKQKAHLLKHLCSVHRNVISSVNDDGNSSHFNCC------FCSMT 718
C L +HL H + + + ++ C S+
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIV 57
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 26.7 bits (59), Expect = 8.1
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 25/52 (48%)
Query: 644 RCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHR 695
RC C K+ G+ F C+ C + F C HR
Sbjct: 17 RCFSCNKKVGVM--------------GFKCK-CGSTF----------CGSHR 43
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 85
Score = 27.2 bits (60), Expect = 8.7
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 24/53 (45%)
Query: 644 RCTYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSVHRN 696
C CGK+ G++ F CR C F C+ HR
Sbjct: 27 HCFLCGKKTGLA-------------TSFECR-CGNNF----------CASHRY 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.438
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,581,945
Number of extensions: 1004382
Number of successful extensions: 2743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 442
Length of query: 1055
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 952
Effective length of database: 3,825,930
Effective search space: 3642285360
Effective search space used: 3642285360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.5 bits)