BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6758
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
VL +DY K + V +++G+ L L+ TNKDWW+V +G+ +VPA+YV+
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNGRQGFVPAAYVK 54
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA+YV+ +
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLDPAQSA 66
Query: 70 NRNNV 74
+R N+
Sbjct: 67 SRENL 71
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+ +G+ +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKT-EVNGRQGFVPAAYV 58
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + + +++G+ L L+ TNKDWW+ I +G+ +VPA+Y+
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK-IEVNGRQGFVPAAYL 58
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + + YVPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGYVPAAYV 58
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV---IRSSGKPF----YVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V I +GK + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 66
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
V+ F ++ + + ++GE+L ++ KTN+DWW+ + G VPA+YV++ + N
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHN 208
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV---IRSSGKPF----YVPASYVE 61
VL +DY K + V +++G+ L L+ TNKDWW+V I +GK + +VPA+YV+
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPASYV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPASYV 58
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV---IRSSGKPF----YVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V ++GK + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYV 66
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVADRQGFVPAAYV 58
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V I++G+ L L+ TNKDWW+ I + + +VPA+Y+
Sbjct: 9 VLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWK-IEVNDRQGFVPAAYL 58
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 58
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 58
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA+YV+
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVK 58
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
V+ F ++ + + ++GE+L ++ KTN+DWW+ + G VPA+YV++
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVGDRQGFVPAAYV 58
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA+YV KKL+
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV---KKLA 73
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + + +VPA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAGYV 58
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 9 VLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 58
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 4 VLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 53
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 9 VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 58
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 9 VLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 58
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l
Mutant
Length = 62
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V + ++PA+Y+
Sbjct: 9 VLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKV-EVDDRQGFIPAAYL 58
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K V +++G+ L L+ TNKDWW+V + + +VPA+YV
Sbjct: 4 VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV 53
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + + I++G+ L L+ TNKDWW+V + + ++PA+Y+
Sbjct: 9 VLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKV-EVNDRQGFIPAAYL 58
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
VL +DY K + + +++G+ L L+ TNKDWW+ I + + +VPA+Y+
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWK-IEVNDRQGFVPAAYL 58
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSG------KPFYVPASYV 60
VL +DY K + V +++G+ L L+ TNKDWW+V ++++ + +VPA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYV 66
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
DY+ D + GEK+ ++++T DWW R +G Y+PA++V + S+G
Sbjct: 15 DYAATDETQLSFLRGEKILILRQTTADWWWGER-AGCCGYIPANHVGKHSGPSSG 68
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 35/52 (67%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
KV+ +DY + +++++G++ F+++++N WW+ +G+ Y+P++YV
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
++ LYDF D + + ++GE L +I+K + WW G+ +P YVE + S
Sbjct: 128 VRTLYDF--PGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSS 185
Query: 68 ----NGNRNN 73
+GNRN+
Sbjct: 186 PHGKHGNRNS 195
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
V+ FDY + + + I++ E+L+L+ + K WW+V S K +VP++YVE
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWRVRNSMNKTGFVPSNYVE 60
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
++ LYDF D + + ++GE L +I+K + WW G+ +P YVE + S
Sbjct: 128 VRTLYDF--PGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSS 185
Query: 68 ----NGNRNN 73
+GNRN+
Sbjct: 186 PHGKHGNRNS 195
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
V+ +DY+ + + + I++ E+L+L+ + K WW+V ++ + YVP++YVE
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVE 84
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine
Kinase, 20 Structures
Length = 58
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 35/52 (67%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
KV+ +DY + +++++G++ F+++++N WW+ +G+ Y+P++YV
Sbjct: 3 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 54
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
V+ +DY+ + + + I++ E+L+L+ + K WW+V ++ + YVP++YVE
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVE 57
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
V+ FDY + + + I++ E+L+L+ + K WW+V S K +VP++YVE
Sbjct: 9 VVAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWRVRNSMNKTGFVPSNYVE 59
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 18 TKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGN 70
+ G+ V +++G+ L L+ TNKDWW+V + + +VPA+YV KKL +G
Sbjct: 10 SAGGREVTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV---KKLDSGT 58
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY ++ + ++GE+L ++ T DWW S+G+ Y+P++YV
Sbjct: 92 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 24 VRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
V +++G+ L L+ TNKDWW+V + + +VPA+YV KKL +G
Sbjct: 8 VTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV---KKLDSG 49
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
V+ +DY T D + + ++ E+ L+ + WW+V +G YVP+SY+
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 72
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY ++ + ++GE+L ++ T DWW S+G+ Y+P++YV
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY ++ + ++GE+L ++ T DWW S+G+ Y+P++YV
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
V+ +DY T D + + ++ E+ L+ + WW+V +G YVP+SY+
Sbjct: 11 VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 61
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY ++ + ++GE+L ++ T DWW S+G+ Y+P++YV
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 24 VRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGN 70
V +++G+ L L+ TNKDWW+V + + +VPA+YV KKL +G
Sbjct: 6 VTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYV---KKLDSGT 48
>pdb|2CT4|A Chain A, Solution Strutcure Of The Sh3 Domain Of The Cdc42-
Interacting Protein 4
Length = 70
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWW-QVIRSSGKPFYVPASYVEVYKKLSN 68
+Y F+ S++ + + EGE L L+++ D W +V R G YVP SY+ V S+
Sbjct: 12 AIYHFEGSSE--GTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGPSS 69
Query: 69 G 69
G
Sbjct: 70 G 70
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 4 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 5 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 3 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 3 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 5 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
+DY T D + + ++ E+ +L+ + WW+V +G Y P+SY+
Sbjct: 12 YDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 4 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
+ ++VLY+F+ ++ + + + +GEKL ++ + K WW V +G+ Y+P++ +E
Sbjct: 8 LKMQVLYEFE--ARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSG 64
Query: 66 LSNG 69
S+G
Sbjct: 65 PSSG 68
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV 45
VL +DY K + V +++G+ L L+ TNKDWW+V
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY ++ + ++GE+L ++ T DWW ++G+ Y+P++YV
Sbjct: 10 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ +K LYD+D T D + +EG+ + + +K WW+ +GK +VPA+YV+
Sbjct: 4 IQVKALYDYDAQTGD--ELTFKEGDTIIVHQKDPAGWWEG-ELNGKRGWVPANYVQ 56
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 1 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ +K LYD+D T D + +EG+ + + +K WW+ +GK +VPA+YV+
Sbjct: 5 IQVKALYDYDAQTGD--ELTFKEGDTIIVHQKDPAGWWEG-ELNGKRGWVPANYVQ 57
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIK-KTNKDWWQV-IRSSGKPFYVPASYVE 61
V YDF ++D + I+ G+K++++ K +KDWW + SGK VPA ++E
Sbjct: 11 VQYDFMAESQD--ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 1 VTLFVALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
T LYD++ T+ + ++GE+L ++ T DWW S+G+ Y+P++YV
Sbjct: 3 TTFVALYDYESRTETD--LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The
Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
+DY T D + + ++ E+ +L+ + WW+V +G Y P+SY+
Sbjct: 12 YDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized
Average Structure
Length = 77
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
V+ +DY T D + + ++ E+ +L+ + WW+V +G Y P+SY+
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 15 VTLFVALYDYEAITEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
+ LYD++ T+D + +GEK ++ + DWW+V ++G+ Y+P+ Y+
Sbjct: 10 FEALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+ + LY F + G+ +R GE + L++ + WW+ + G + PASYV++
Sbjct: 1 MSGARCRTLYPFS-GERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQL 59
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 15 VTLFVALYDYEAWTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY + + + ++GE+ +I T DWW+ ++GK Y+P++YV
Sbjct: 34 YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+T LYD++ T+ + ++GE+L ++ T DWW ++G+ Y+P++YV
Sbjct: 1 MTFVALYDYESRTETD--LSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+DY + + + ++GE+ +I T DWW+ ++GK Y+P++YV
Sbjct: 12 YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIK-KTNKDWWQV-IRSSGKPFYVPASYVE 61
V YDF ++D + I+ G+K++++ K +KDWW + SGK VPA ++E
Sbjct: 7 VQYDFMAESQD--ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
FD++ D + + ++G+ L + K + WW S GK +P YVE Y+ S
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
FD++ D + + ++G+ L + K + WW S GK +P YVE Y+ S
Sbjct: 21 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 74
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
VTL V LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 1 VTLFVALYDYEAWTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
+D+ + +R++ G++ +++K + WW+ G Y+P++YV
Sbjct: 9 YDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
T LYD++ T+ + ++GE+L ++ T DWW ++G+ Y+P++YV
Sbjct: 8 TTFVALYDYESRTETD--LSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 5 ALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
FD++ D + + ++G+ L + K + WW S GK +P YVE Y+ S
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 196
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
FD++ D + + ++G+ L + K + WW S GK +P YVE Y+ S
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
T LYD++ T+ + ++GE+L ++ T DWW ++G+ Y+P++YV
Sbjct: 8 TTFVALYDYESRTETD--LSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 5 ALYDYEAITEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVYKKL 66
+ LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P+ Y+ +L
Sbjct: 8 FEALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL 65
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 24 VRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVYKK 65
+ ++GE + LI+K N++W++ I +G+ PASYV+V ++
Sbjct: 34 LSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE 76
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
FD+ + K + +Q+G+ +++ K+ +K+W + G+ PA+YVEV S+G
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG-EHHGRLGIFPANYVEVLSGPSSG 68
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
+ LY F+ T D Y I+EG+ +++ ++ +WW+ S G+ +P++YV
Sbjct: 17 FRALYTFEPRTPDELY--IEEGDIIYITDXSDTNWWKGT-SKGRTGLIPSNYV 66
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 32.7 bits (73), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ D + + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 10 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ D + + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ D + + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 10 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ D + + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ D + + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
+DY+ ++ + + G+ L +I + WW V R+ G+ +VP SY+E S+G
Sbjct: 15 YDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN-GQRGFVPGSYLEKLSGPSSG 69
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ D + + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 7 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 56
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
++ + FDY + + + ++G L L ++ + DWW+ R +G +P Y+ V
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG-RHNGIDGLIPHQYIVV 63
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+VL+ F TK+ +++ G +F++KK N +W V+ + G+ VP +Y+E S+
Sbjct: 11 RVLFGFVPETKE--ELQVMPGNIVFVLKKGNDNWATVMFN-GQKGLVPCNYLEPVSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 14/84 (16%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-----KDWWQVIRSSGKPFYVPASYVEVY 63
+ LYDF + + V +++G+ + ++ K + DWW+V +G Y+P +Y+E+
Sbjct: 18 RALYDFVPENPEME-VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 64 KKLSNGNRNNVENINPTMEKTRSY 87
K+ R +E+++ ++TR++
Sbjct: 77 KR-----RKKIEHVD---DETRTH 92
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
FDY + + + ++G L L + ++DWW+ R +G VP Y+ V
Sbjct: 13 FDYVGRSARELSFKKGASLLLYHRASEDWWEG-RHNGIDGLVPHQYIVV 60
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE--- 61
D V+ +DY+ + I G+ + + K N+DWW G+ Y PA++V
Sbjct: 4 DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET 63
Query: 62 VYKKL 66
+Y++L
Sbjct: 64 LYQEL 68
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDW-WQVIRSSGKPFYVPASYVEV 62
+DYS D V Q+G+ + +++ + W + + +G +PA+YVE
Sbjct: 10 YDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEA 59
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
FD++ + + G+ +FL+ + NKDW + +R + F P S+V++ K
Sbjct: 11 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF--PLSFVKILK 60
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
FD+ + K + +Q+G+ +++ K+ +K+W + G+ PA+YVEV
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG-EHHGRLGIFPANYVEV 55
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
FD++ + + G+ +FL+ + NKDW + +R + F P S+V++ K
Sbjct: 25 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF--PLSFVKILK 74
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
Length = 80
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK-----DWWQVIRSSGKPFYVPASYVEVY 63
+ LYDF + + V +++G+ + ++ K + DWW+V +G Y+P +Y+E+
Sbjct: 18 RALYDFVPENPEME-VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 64 KK 65
K+
Sbjct: 77 KR 78
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASY 59
M VTL V +DY+ + +GEK ++ + DWW+ ++G+ Y+P++Y
Sbjct: 1 MRGSGVTLFVAL-YDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNY 59
Query: 60 V 60
V
Sbjct: 60 V 60
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKD----WWQVIRSSGKPFYVPASYVEVYKKL 66
+DYS + G + +EGE + ++++ + WW + G+ YVP +Y ++ ++
Sbjct: 161 WDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALH--GQEGYVPRNYFGLFPRV 215
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDW-WQVIRSSGKPFYVPASYVEV 62
+DY D V ++G+ + ++ ++ W + ++ +G+ +PA+YVE
Sbjct: 10 YDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
V + L+D + T D + + + G+ + ++ TN++WW + G+ ++ PAS+V
Sbjct: 37 VCAEALWD--HVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWF-PASFV 88
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+Y ++ + +Q GE + +I+K WW + +S + +VPA+Y+E
Sbjct: 16 NYKKQENSELSLQAGEVVDVIEKNESGWW-FVSTSEEQGWVPATYLEA 62
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
KV+ +DY+ + QEG +++IKK + W++ + +G P +YVE S+
Sbjct: 19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM-NGVTGLFPGNYVESISGPSS 77
Query: 69 G 69
G
Sbjct: 78 G 78
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK-------L 66
FD++ D + + ++G+ L + K + WW GK +P YVE + L
Sbjct: 8 FDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPSSASVSTL 67
Query: 67 SNGNRNN 73
+ GN+++
Sbjct: 68 TGGNQDS 74
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE-VYKKLSNGNRNNV 74
Y+ +G V + EGE + +I K WW VIR Y P+ Y++ + +S R
Sbjct: 90 YTAVEGDEVSLLEGEAVEVIHKLLDGWW-VIRKDDVTGYFPSMYLQKSGQDVSQAQRQIK 148
Query: 75 ENINPTMEKTRSYSEGNDKVRKNI 98
P R+ + + RK +
Sbjct: 149 RGAPPRRSSIRNAHSIHQRSRKRL 172
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
DY G + + G+ + +++K+ WW + K ++PAS++E
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWW-FCQMKAKRGWIPASFLE 64
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE-VYKKLSNGNRNNV 74
Y+ +G V + EGE + +I K WW VIR Y P+ Y++ + +S R
Sbjct: 90 YTAVEGDEVSLLEGEAVEVIHKLLDGWW-VIRKDDVTGYFPSMYLQKSGQDVSQAQRQIK 148
Query: 75 ENINPTMEKTRSYSEGNDKVRKNI 98
P R+ + + RK +
Sbjct: 149 RGAPPRRSSIRNAHSIHQRSRKRL 172
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
DY G + + G+ + +++K+ WW + K ++PAS++E
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWW-FCQMKAKRGWIPASFLE 64
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASY 59
M VTL V +DY+ + +GEK +++ DWW+ ++G+ Y+P++Y
Sbjct: 1 MRGSGVTLFVAL-YDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNY 59
Query: 60 V 60
V
Sbjct: 60 V 60
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEVYK 64
++ LY F T++ + ++GE + +I+K D WW+ + G+ VP +YV V
Sbjct: 19 VVQTLYPFSSVTEE--ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV-- 74
Query: 65 KLSNGNRNNVENINPT 80
LS+G + + P+
Sbjct: 75 -LSDGPALHPAHSGPS 89
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66
+ +V+ +DY+ ++ + +G+ + ++ K + DWW+ SG+ P++YV++ +
Sbjct: 2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG-EVSGQVGLFPSNYVKLTTDM 60
Query: 67 SNGNR-----NNVENINPTMEKTRSY 87
+ + ++ + PT K + Y
Sbjct: 61 DPSQQWCSDLHLLDMLTPTERKRQGY 86
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-----KDWWQVIRSSGKPFYVPASYVEV 62
+ LYDF + + V +++G+ + ++ K + DWW+V +G Y+P +Y+E+
Sbjct: 11 RALYDFVPENPEME-VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
FD++ + + G+ +FL+ + NKDW + +R + F P S+V++ K
Sbjct: 181 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF--PLSFVKILK 230
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEVYK 64
++ LY F T++ + ++GE + +I+K D WW+ + G+ VP +YV V
Sbjct: 8 VVQTLYPFSSVTEE--ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV-- 63
Query: 65 KLSNG 69
LS+G
Sbjct: 64 -LSDG 67
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
Y+ +G V + EGE + +I K WW VIR Y P+ Y++
Sbjct: 89 YTAVEGDEVSLLEGEAVEVIHKLLDGWW-VIRKDDVTGYFPSMYLQ 133
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
DY G + + G+ + +++K+ WW + K ++PAS++E
Sbjct: 18 DYEKTSGSEMALSTGDVVEVVEKSESGWW-FCQMKAKRGWIPASFLE 63
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+D+ T D + + + G+ + ++ TN++WW + G+ ++ PAS+V +
Sbjct: 37 WDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWF-PASFVRL 84
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
D++ + + ++GE L +I+K WW + G VP +Y+E Y +
Sbjct: 18 DFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
Y+ +G V + EGE + +I K WW VIR Y P+ Y++
Sbjct: 90 YTAVEGDEVSLLEGEAVEVIHKLLDGWW-VIRKDDVTGYFPSMYLQ 134
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 15 DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
DY G + + G+ + +++K+ WW + K ++PAS++E
Sbjct: 19 DYEKTSGSEMALSTGDVVEVVEKSESGWW-FCQMKAKRGWIPASFLE 64
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+D+ T D + + + G+ + + TN++WW + G+ ++ PAS+V +
Sbjct: 74 WDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWF-PASFVRL 121
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEV 62
++ LY F T++ + ++GE + +I+K D WW+ + G+ VP +YV V
Sbjct: 4 VVQTLYPFSSVTEE--ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 59
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
+K+LYDF + ++ + + + E L +++ + WW++ SG+ YVP + + S
Sbjct: 10 VKILYDF--TARNANELSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEASGPS 66
Query: 68 NG 69
+G
Sbjct: 67 SG 68
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 8 LKVLYDFDYSTKDGKYVR---IQEGEKLFLIKKTNKDWWQVIRSSG 50
++ L+D+D + DG R + G+ L + ++ +WWQ R G
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLG 53
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWW--QVIRSSGKPFYVPASYVEVY 63
+D+ T + + + G+ + ++ +NKDWW Q+ G + PAS+V ++
Sbjct: 17 WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEG---WFPASFVRLW 65
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
FD+ + K + +Q+G+ +++ K+ +++W++ G+ P +Y+E+ S+G
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG-EHHGRVGIFPRTYIELLSGPSSG 68
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
K LY F D + +++G+ + + +K + WW +GK + PA+YVE
Sbjct: 10 CKALYSFQARQDD--ELNLEKGDIVIIHEKKEEGWW-FGSLNGKKGHFPAAYVE 60
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ ++ + + G+ + LI K + +WW+ ++ + + P++YV Y
Sbjct: 11 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIF-PSNYVAPY 59
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
++ + +FDY + + I GE + I+K + WW+ + +G+ P ++V KK
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEG-QINGRRGLFPDNFVREIKK 58
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 3 LQDVTLKVLYDF-DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
++D+ + LYD+ +S D + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 1 MEDIIVVALYDYVSWSPDD---LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 56
>pdb|2CUD|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Src-Like Adopter Protein (Slap)
Length = 79
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVYKKL 66
L VL D Y + D + GEKL +I WW+ I S+G+ Y+P V
Sbjct: 20 LAVLSD--YPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESYIPGICVARVSGP 76
Query: 67 SNG 69
S+G
Sbjct: 77 SSG 79
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK--DWWQVIRSSGKPFYVPASYVEV 62
T LY+F + + + ++G+ + ++KK++ DWW R++GK PA+YV V
Sbjct: 4 ATAVALYNF--AGEQPGDLAFKKGDVITILKKSDSQNDWW-TGRTNGKEGIFPANYVRV 59
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 68
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
VL ++D+ ++ + +++ + L ++ + K WW+V +G+ YVP + + Y ++
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVPYNILTPYPAAAS 68
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
F Y + + QEG+ + ++ K N++W + S GK P +VE
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLSKVNEEWLEG-ESKGKVGIFPKVFVE 58
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 3 LQDVTLKVLYDF-DYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
++D+ + LYD+ +S D + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 1 MEDIIVVALYDYVSWSPDD---LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 56
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 17 STKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNNVEN 76
S K+G+YV I+ GEK FL K K V +S K + EV K N E
Sbjct: 3 SFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLK-------FDEVIGKPEGVKINGFEV 55
Query: 77 INPTMEK 83
PT+E+
Sbjct: 56 YRPTLEE 62
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ ++ + + G+ + LI K + +WW+ ++ + + P++YV Y
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIF-PSNYVCPY 57
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
++ LYDF+ + +D + + + GE + ++ ++ +WWQ G + P+++V
Sbjct: 8 VRALYDFE-AVEDNE-LTFKHGELITVLDDSDANWWQGENHRGTGLF-PSNFV 57
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+D+ + LYD++ + + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 8 EDIIVVALYDYEAIHHED--LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 62
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 64
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
VL ++D+ ++ + +++ + L ++ + K WW+V +G+ YVP + + Y
Sbjct: 10 VLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVPYNILTPY 62
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+D+ + LYD++ + + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 24 EDIIVVALYDYEAIHHED--LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 78
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 13 DFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
D D+ T G++ R G L + DW + GKP PA ++
Sbjct: 258 DLDFYT--GEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFI 303
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 13 DFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
D D+ T G++ R G L + DW + GKP PA ++
Sbjct: 252 DLDFYT--GEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFI 297
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment
Of Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 8 LKVLYDFDYSTKDGKYVR----IQEGEKLFLIKKTNKDWWQVIR 47
++ L+D+D TKD ++ + G+ L +I +++WWQ R
Sbjct: 10 IRALFDYD-KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARR 52
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ 44
+V+ +DY+ + + +G+ + ++ K + DWWQ
Sbjct: 35 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQ 71
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+V+ +DY+ + + +G+ + ++ K + DWWQ +G P++YV++
Sbjct: 19 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG-EINGVTGLFPSNYVKM 72
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
FD++ ++ + + G+ + LI K + +WW+ ++ + + P++YV Y
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIF-PSNYVCPY 57
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 8 LKVLYDFDYSTKDGKYVR----IQEGEKLFLIKKTNKDWWQVIR 47
++ L+D+D TKD ++ + G+ L +I +++WWQ R
Sbjct: 4 IRALFDYD-KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARR 46
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+D+ + LYD++ + + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 8 EDIIVVALYDYEAIHHED--LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 62
>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 48 SSGKPFYVPASYVEVYKK 65
SSGKP + SY+E+Y+K
Sbjct: 5 SSGKPIFTDESYLELYRK 22
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
+D+ + LYD Y + + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 1 EDIIVVALYD--YEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 55
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
Y+++ + ++G + +I+K + WW IR GK + PASY+
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWW-YIRYLGKEGWAPASYL 60
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK--DWWQVIRSSGKPFYVPASYVEV 62
K + + ++ ++ + ++G+ + ++KK++ DWW R +G+ PA+YVE+
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTG-RVNGREGIFPANYVEL 59
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV--IRSSGKPF------YVPASYVEVYKK 65
FDY + + + + G+KL ++ +++ WW + G Y+P++YV
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG 73
Query: 66 LSNG 69
S+G
Sbjct: 74 PSSG 77
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKL-FLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
T K YDF +D + ++EG+ + L KK + WW+ G+ + P++YVE
Sbjct: 7 TAKARYDF--CARDRSELSLKEGDIIKILNKKGQQGWWRG-EIYGRIGWFPSNYVE 59
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVYKKLS 67
+ + F+++ + ++GE++ L+++ +++W++ I + + P +YV+V S
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGPS 68
Query: 68 NG 69
+G
Sbjct: 69 SG 70
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/60 (20%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVYKK 65
T + + F+++ + ++GE++ L+++ +++W++ I + + P +YV+V K+
Sbjct: 6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
L D+ + F+Y + + + +G K+ +++K + WW+ +G+ + P++YV
Sbjct: 13 LYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG-SYNGQVGWFPSNYV 69
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGK---PFYVPASYVEVYKKLSNGNR 71
Y + + + G+ + ++KK WWQ +++ GK + PAS+V++
Sbjct: 16 YVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL--------- 66
Query: 72 NNVENINPTMEKTRSYSEG 90
+ P+ E+ S G
Sbjct: 67 -----LGPSSERASGPSSG 80
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 8 LKVLYDFDYSTKD----GKYVRIQEGEKLFLIKKTNKDWWQVIR 47
++ L+D+D TKD + + + G+ L +I +++WWQ R
Sbjct: 430 IRALFDYD-KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARR 472
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
Length = 410
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK 40
EL+ + +L + +S ++ K I+E EK FL+KK +K
Sbjct: 101 ELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSK 139
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 24 VRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69
+ ++ G+ + L++ +N+DWW+ + + + PA++V+ S+G
Sbjct: 24 LEMRPGDIITLLEDSNEDWWKG-KIQDRIGFFPANFVQRLSGPSSG 68
>pdb|3MYU|A Chain A, Mycoplasma Genitalium Mg289
pdb|3MYU|B Chain B, Mycoplasma Genitalium Mg289
Length = 344
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 16 YSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVP 56
++ G+ + I + K+ + W Q I+ S +PFY P
Sbjct: 225 FAVVRGREIGINKNIKIVFDDANSFSWTQNIKGSKRPFYTP 265
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
F Y+ + + + + G+ L L ++ + DWW+ +G +P Y+ +
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRG-EHNGMRGLIPHKYITL 64
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYV 60
++D+ + LYD+ YS + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 1 MEDIIVVALYDY-YSPFSWD-LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYV 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,310,379
Number of Sequences: 62578
Number of extensions: 141353
Number of successful extensions: 565
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 202
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)