Query psy6759
Match_columns 100
No_of_seqs 123 out of 1009
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:42:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.6 1.8E-15 3.9E-20 81.5 6.0 49 10-61 1-49 (49)
2 PF07653 SH3_2: Variant SH3 do 99.5 1.1E-13 2.3E-18 76.0 6.4 54 7-63 1-55 (55)
3 PF00018 SH3_1: SH3 domain; I 99.4 3.7E-13 8E-18 71.9 5.6 47 9-57 1-48 (48)
4 KOG2199|consensus 99.4 5.4E-14 1.2E-18 102.5 0.9 54 7-63 217-270 (462)
5 smart00326 SH3 Src homology 3 99.3 8.8E-12 1.9E-16 67.5 6.5 54 7-62 4-57 (58)
6 KOG4226|consensus 99.3 5.2E-12 1.1E-16 88.8 4.8 59 7-67 193-253 (379)
7 cd00174 SH3 Src homology 3 dom 99.3 1.9E-11 4E-16 65.5 5.9 52 8-61 2-53 (54)
8 KOG1029|consensus 99.2 5.1E-12 1.1E-16 98.3 2.8 61 6-69 1054-1114(1118)
9 KOG2070|consensus 99.2 3E-11 6.6E-16 90.4 4.9 57 5-64 17-73 (661)
10 KOG1118|consensus 99.1 2.1E-11 4.6E-16 86.7 2.6 57 7-66 308-364 (366)
11 KOG4792|consensus 99.1 1.7E-11 3.7E-16 84.2 0.7 61 5-67 124-184 (293)
12 KOG4225|consensus 99.0 4.3E-10 9.2E-15 83.1 4.1 55 8-65 233-287 (489)
13 KOG4226|consensus 99.0 7.3E-10 1.6E-14 78.1 4.7 55 8-65 110-164 (379)
14 KOG0162|consensus 98.9 4.7E-10 1E-14 87.4 3.0 54 7-63 1053-1106(1106)
15 KOG1264|consensus 98.8 1.8E-09 4E-14 85.0 1.5 59 5-65 774-832 (1267)
16 KOG0515|consensus 98.8 3.5E-09 7.7E-14 80.2 2.2 58 8-68 686-746 (752)
17 KOG2996|consensus 98.7 1.7E-08 3.6E-13 77.3 4.0 55 9-64 807-863 (865)
18 KOG2546|consensus 98.7 9.4E-09 2E-13 75.9 2.2 54 8-64 426-479 (483)
19 KOG2856|consensus 98.6 8.4E-09 1.8E-13 75.2 0.5 56 6-63 415-471 (472)
20 KOG4348|consensus 98.6 2.1E-08 4.6E-13 74.6 1.3 57 7-66 102-158 (627)
21 KOG1029|consensus 98.5 5.2E-08 1.1E-12 76.5 2.8 59 6-67 694-754 (1118)
22 KOG4225|consensus 98.5 1.2E-07 2.6E-12 70.4 3.9 54 7-62 434-488 (489)
23 KOG4348|consensus 98.5 1.7E-07 3.8E-12 69.8 4.3 55 7-64 263-319 (627)
24 KOG3655|consensus 98.4 5.6E-08 1.2E-12 72.6 0.6 55 7-63 429-483 (484)
25 KOG3875|consensus 98.4 5.2E-08 1.1E-12 69.7 -0.7 57 7-65 270-332 (362)
26 KOG3601|consensus 98.3 3.9E-07 8.5E-12 62.1 2.0 55 6-63 164-218 (222)
27 KOG3557|consensus 98.2 2.8E-07 6.1E-12 71.1 0.3 61 5-68 500-560 (721)
28 KOG1843|consensus 98.2 7.5E-07 1.6E-11 65.8 2.3 53 7-62 418-472 (473)
29 KOG4278|consensus 98.1 4.9E-06 1.1E-10 65.3 4.9 55 7-64 92-147 (1157)
30 KOG1702|consensus 98.1 6.3E-06 1.4E-10 56.3 4.2 56 6-63 208-264 (264)
31 KOG0197|consensus 98.0 3.8E-06 8.3E-11 63.4 2.4 83 7-91 13-102 (468)
32 KOG0609|consensus 97.8 4.9E-06 1.1E-10 63.3 0.7 58 6-63 215-281 (542)
33 KOG3523|consensus 97.8 1.1E-06 2.3E-11 67.7 -3.4 60 8-69 611-671 (695)
34 KOG2528|consensus 97.7 1.1E-05 2.5E-10 60.2 1.0 56 7-64 4-60 (490)
35 PF14603 hSH3: Helically-exten 97.5 0.00014 3E-09 43.3 3.8 42 21-62 30-71 (89)
36 KOG3632|consensus 97.5 0.00014 3.1E-09 59.0 3.9 59 7-66 1140-1205(1335)
37 KOG4773|consensus 97.2 0.00013 2.8E-09 53.3 1.1 54 8-64 178-231 (386)
38 KOG4575|consensus 97.2 0.00048 1E-08 53.9 4.0 57 5-63 8-65 (874)
39 KOG2222|consensus 97.1 7.1E-05 1.5E-09 57.0 -1.1 54 8-64 551-604 (848)
40 PF08239 SH3_3: Bacterial SH3 96.9 0.0036 7.7E-08 33.5 4.9 40 22-61 15-55 (55)
41 KOG3775|consensus 96.9 0.00059 1.3E-08 50.5 2.2 55 8-64 265-320 (482)
42 KOG3601|consensus 96.9 0.00012 2.6E-09 50.1 -1.4 52 8-62 3-55 (222)
43 KOG3771|consensus 96.5 0.0013 2.8E-08 49.7 1.4 51 7-60 402-453 (460)
44 smart00287 SH3b Bacterial SH3 96.2 0.02 4.3E-07 31.2 5.0 38 23-60 24-61 (63)
45 KOG4792|consensus 96.2 0.012 2.7E-07 41.1 4.7 56 8-64 230-285 (293)
46 KOG3725|consensus 96.1 0.0014 3E-08 46.5 -0.1 53 7-62 319-373 (375)
47 KOG1451|consensus 96.1 0.0057 1.2E-07 47.8 3.0 52 8-62 759-811 (812)
48 KOG4429|consensus 96.0 0.0015 3.2E-08 47.1 -0.3 53 8-63 366-418 (421)
49 KOG0199|consensus 95.6 0.04 8.6E-07 44.5 5.8 53 6-62 377-431 (1039)
50 PRK10884 SH3 domain-containing 95.6 0.026 5.7E-07 38.7 4.3 41 23-63 47-88 (206)
51 KOG3565|consensus 93.6 0.012 2.5E-07 46.5 -1.3 55 7-63 580-636 (640)
52 KOG3632|consensus 93.4 0.14 3.1E-06 42.4 4.5 58 8-65 450-512 (1335)
53 KOG0040|consensus 93.2 0.0013 2.8E-08 55.8 -7.2 56 8-66 971-1026(2399)
54 PF06347 SH3_4: Bacterial SH3 92.6 0.38 8.3E-06 25.6 4.2 37 22-60 17-53 (55)
55 PRK13914 invasion associated s 91.8 0.4 8.6E-06 36.9 4.8 41 23-63 102-142 (481)
56 KOG3812|consensus 91.2 0.12 2.5E-06 38.3 1.4 50 8-57 61-117 (475)
57 KOG2996|consensus 90.6 0.18 3.9E-06 39.8 2.1 43 22-64 625-669 (865)
58 COG3103 SH3 domain protein [Si 88.9 1.1 2.5E-05 30.7 4.7 39 25-63 49-88 (205)
59 smart00743 Agenet Tudor-like d 77.4 3.6 7.8E-05 22.1 2.8 24 25-48 2-25 (61)
60 PF11302 DUF3104: Protein of u 69.7 6.5 0.00014 22.8 2.6 24 24-47 4-33 (75)
61 KOG3705|consensus 63.9 8.2 0.00018 29.6 2.9 53 8-62 512-565 (580)
62 KOG0708|consensus 62.9 2.5 5.4E-05 31.5 0.0 58 5-62 66-131 (359)
63 PRK13545 tagH teichoic acids e 55.4 20 0.00042 28.4 3.8 41 25-65 371-416 (549)
64 KOG3580|consensus 52.9 28 0.0006 28.3 4.2 52 7-60 506-565 (1027)
65 COG3807 Uncharacterized protei 44.0 12 0.00027 24.7 1.0 36 25-61 60-95 (171)
66 KOG4384|consensus 28.0 44 0.00094 25.0 1.8 56 8-64 139-194 (361)
67 PF05641 Agenet: Agenet domain 28.0 76 0.0016 17.4 2.4 23 26-48 1-26 (68)
68 PF12913 SH3_6: SH3 domain of 27.0 1.1E+02 0.0024 16.4 4.6 35 22-57 19-54 (54)
69 PF08940 DUF1918: Domain of un 26.4 1E+02 0.0022 17.0 2.6 30 26-55 20-50 (58)
70 smart00333 TUDOR Tudor domain. 26.0 1E+02 0.0023 15.7 2.9 22 26-48 3-24 (57)
71 KOG1314|consensus 21.3 76 0.0016 24.0 1.9 43 20-63 330-382 (414)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.62 E-value=1.8e-15 Score=81.51 Aligned_cols=49 Identities=27% Similarity=0.675 Sum_probs=41.6
Q ss_pred EeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEE
Q psy6759 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (100)
Q Consensus 10 al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~ 61 (100)
|+|+|.++.. +||+|++|++|.|+.+.+++||.+++ +|+.|+||++||+
T Consensus 1 Al~~y~~~~~--dELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDP--DELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSST--TB-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCccCCCCCc--CEeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence 6889766655 49999999999999998899999998 6999999999985
No 2
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.50 E-value=1.1e-13 Score=76.03 Aligned_cols=54 Identities=22% Similarity=0.567 Sum_probs=44.5
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEE-EccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLI-KKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl-~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
+++|++||.. .+..+|+|.+||+|.|+ .+.+++||.++. +|+.|+||.+|++++
T Consensus 1 ~~~a~~d~~~--~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVA--EDPDELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBES--SSTTB-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEEH
T ss_pred CEEEeEEECC--CCCCceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEEC
Confidence 4789999665 45569999999999999 777789999999 699999999999864
No 3
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.44 E-value=3.7e-13 Score=71.94 Aligned_cols=47 Identities=32% Similarity=0.743 Sum_probs=40.4
Q ss_pred EEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCC-CceEEEeC
Q psy6759 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSS-GKPFYVPA 57 (100)
Q Consensus 9 ~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~-g~~G~vP~ 57 (100)
+|+|+|..+.. ++|+|.+|+.+.|+.+.+++||.+++.. ++.|+||+
T Consensus 1 ~Alydf~~~~~--~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDP--DELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSST--TBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCC--CEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999776654 5999999999999999989999999975 69999995
No 4
>KOG2199|consensus
Probab=99.40 E-value=5.4e-14 Score=102.45 Aligned_cols=54 Identities=17% Similarity=0.498 Sum_probs=47.9
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
.|+|||||.+... +||+|..||+|.|++..+++||+|++. +..|+||++||...
T Consensus 217 kVRALYDFeAaE~--nELsFkaGdIItVLd~s~~~WWKG~~~-~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 217 KVRALYDFEAAED--NELSFKAGDIITVLDDSDPNWWKGENH-RGIGLFPSNFVTAD 270 (462)
T ss_pred hhhhhhcccccCC--CccceecCcEEEEcccCCcchhccccC-Ccccccchhhhhhh
Confidence 3899999876544 599999999999999999999999997 78899999999754
No 5
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.32 E-value=8.8e-12 Score=67.54 Aligned_cols=54 Identities=26% Similarity=0.620 Sum_probs=47.2
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEe
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~ 62 (100)
.++|+|+|... ...+|++.+|+.+.++.....+||.++..+++.|+||.+|++.
T Consensus 4 ~~~a~~~~~~~--~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 4 QVRALYDYTAQ--DPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred EEEEeeeeCCC--CCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 47899997654 4469999999999999998889999998778999999999975
No 6
>KOG4226|consensus
Probab=99.27 E-value=5.2e-12 Score=88.84 Aligned_cols=59 Identities=29% Similarity=0.595 Sum_probs=50.7
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEc--cCCCeEEEEeCCCceEEEeCCcEEeccccC
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKK--TNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~--~~~~ww~~~~~~g~~G~vP~~yv~~~~~~~ 67 (100)
.++|||+|+.... .||+|.+|+.+.|+++ .+++||++|+..|+.|+||.||++++....
T Consensus 193 vVvaLYsFsssnd--eELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~ 253 (379)
T KOG4226|consen 193 VVVALYSFSSSND--EELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGP 253 (379)
T ss_pred EEEEEecccCCCh--hhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCc
Confidence 3689999876544 5999999999999997 478999999999999999999999885444
No 7
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.27 E-value=1.9e-11 Score=65.49 Aligned_cols=52 Identities=27% Similarity=0.636 Sum_probs=45.0
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEE
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~ 61 (100)
++|+|+|..... .+|+|.+|+.+.++.....+||.+++..++.|+||.+|++
T Consensus 2 ~~a~~~~~~~~~--~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDP--DELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCC--CCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 678999765544 5999999999999999778999999986699999999985
No 8
>KOG1029|consensus
Probab=99.22 E-value=5.1e-12 Score=98.33 Aligned_cols=61 Identities=20% Similarity=0.517 Sum_probs=51.0
Q ss_pred eEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEeccccCCC
Q psy6759 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNG 69 (100)
Q Consensus 6 ~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~~~~~ 69 (100)
+.|.|+|||.++ +.+||+|.+|++|.|+++++++||.|... |..|+||+|||........+
T Consensus 1054 ~qviamYdY~Aq--ndDELsF~kgdiI~VlnkdepeWW~Ge~n-g~sGLFPSNYV~k~ttd~dp 1114 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQ--NDDELSFKKGDIINVLNKDEPEWWSGERN-GKSGLFPSNYVQKQTTDGDP 1114 (1118)
T ss_pred ceeEEeeccccC--CcccccccCCCEEEecCCCChhhhccccc-CccccCccccccccccCCCh
Confidence 357899996544 55699999999999999999999999887 99999999999766554443
No 9
>KOG2070|consensus
Probab=99.18 E-value=3e-11 Score=90.41 Aligned_cols=57 Identities=16% Similarity=0.506 Sum_probs=49.4
Q ss_pred CeEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 5 ~~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
...++|.|.|. +.+.+||+|.+||+|.|.+....+||.|... |.+||||++||.++.
T Consensus 17 pLvvrAkf~F~--gsNnDELsf~KgDvItVTq~eeGGWWEGTln-g~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 17 PLVVRAKFNFQ--GSNNDELSFSKGDVITVTQVEEGGWWEGTLN-GRTGWFPSNYVREIK 73 (661)
T ss_pred ceEEEEEeecc--cCCCceeccccCCEEEEEEeccCcceecccc-CccCccchHHHHHHh
Confidence 34578888865 4455699999999999999999999999987 999999999999885
No 10
>KOG1118|consensus
Probab=99.14 E-value=2.1e-11 Score=86.66 Aligned_cols=57 Identities=26% Similarity=0.560 Sum_probs=50.7
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecccc
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~~ 66 (100)
.|+|+|||+.. +.+||.|..|++|.|....+.+||.|+.. |.+|+||.+|++.+.+.
T Consensus 308 ~cralYdFepe--nEgEL~fkeGDlI~l~~QIdenWyeG~~~-g~sG~FPvnYv~vlvpl 364 (366)
T KOG1118|consen 308 CCRALYDFEPE--NEGELDFKEGDLITLTNQIDENWYEGEKH-GESGMFPVNYVEVLVPL 364 (366)
T ss_pred hheeeeccCCC--CCCccCcccCceeeehhhcCcchhhheec-CccCccccceeEEeccC
Confidence 48999998765 44699999999999999999999999987 89999999999987654
No 11
>KOG4792|consensus
Probab=99.10 E-value=1.7e-11 Score=84.19 Aligned_cols=61 Identities=31% Similarity=0.626 Sum_probs=52.9
Q ss_pred CeEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEeccccC
Q psy6759 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67 (100)
Q Consensus 5 ~~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~~~ 67 (100)
.++++++|||. +.+..+|.|++|+++.|+.+....||.+|+..|+.|+||.+||+.+...+
T Consensus 124 ~~~vr~~fdF~--G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 124 AEYVRALFDFN--GNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hhheeeeeccC--CCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhh
Confidence 34678899965 55667999999999999999999999999999999999999999875444
No 12
>KOG4225|consensus
Probab=98.99 E-value=4.3e-10 Score=83.09 Aligned_cols=55 Identities=27% Similarity=0.646 Sum_probs=49.1
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEeccc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~ 65 (100)
++|+|+|.++.. .||+|++|++|+|+++.+..|+.|... |+.|+||++||+.+..
T Consensus 233 aralf~F~~qt~--kEL~~~kGDIVyI~rkvD~nWyeGEhh-Gr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 233 ARALFDFEAQTP--KELPFNKGDIVYILRKVDQNWYEGEHH-GRVGIFPASYVEILTP 287 (489)
T ss_pred hhheeccccCCc--cccccCCCCEEEEEeeccCceeeeeec-ceecceechheeecCc
Confidence 688999766555 599999999999999999999999987 9999999999998754
No 13
>KOG4226|consensus
Probab=98.98 E-value=7.3e-10 Score=78.15 Aligned_cols=55 Identities=18% Similarity=0.493 Sum_probs=46.6
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEeccc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~ 65 (100)
+++.|. |.+..++||++.+|..+.|+++..++||++... |+.||||+||+.+.-.
T Consensus 110 AvVKf~--Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~n-g~VGWFPSNYv~E~~d 164 (379)
T KOG4226|consen 110 AVVKFN--YVAEREDELSLTKGTRVTVMEKSSDGWWRGSYN-GQVGWFPSNYVTEEVD 164 (379)
T ss_pred eEEEEe--eccccccccccccCcEEEEEEeccCcceecccC-Ceeccccccceehhcc
Confidence 444555 666666799999999999999999999999984 9999999999998643
No 14
>KOG0162|consensus
Probab=98.94 E-value=4.7e-10 Score=87.39 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=47.7
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
.|.|+|||.++ +.+||+|.+|++|.++.++..+||.++.. |++||||.+||.++
T Consensus 1053 ~~~A~Y~y~gq--~~dEls~~~~diIei~~edpSGWw~gk~~-~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1053 VCEALYDYPGQ--DVDELSFKKGDIIEIMREDPSGWWLGKLN-GKEGLFPGNYVTEY 1106 (1106)
T ss_pred ceeeeccCCCC--CcccccccCCCEEEEeccCCCcchhhccC-CccccccccccccC
Confidence 48999997655 55699999999999999999999999965 89999999999763
No 15
>KOG1264|consensus
Probab=98.79 E-value=1.8e-09 Score=84.96 Aligned_cols=59 Identities=24% Similarity=0.473 Sum_probs=51.2
Q ss_pred CeEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEeccc
Q psy6759 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65 (100)
Q Consensus 5 ~~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~ 65 (100)
++.|+|||||.++.. +||+|.++-+|..+.+....||+|+..+...+|||++||+++.+
T Consensus 774 ~vt~kAL~~Yka~r~--DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRS--DELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred chhhhhhhccccCCc--ccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 456899999665555 59999999999999999899999999866889999999999854
No 16
>KOG0515|consensus
Probab=98.76 E-value=3.5e-09 Score=80.24 Aligned_cols=58 Identities=24% Similarity=0.652 Sum_probs=47.7
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCC---CeEEEEeCCCceEEEeCCcEEeccccCC
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK---DWWQVIRSSGKPFYVPASYVEVYKKLSN 68 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~---~ww~~~~~~g~~G~vP~~yv~~~~~~~~ 68 (100)
+-|+|||..+ ..+||+|..||.+.||++++. +||+++.. |++||||.+|+-.+.+...
T Consensus 686 vYAlwdYeaq--f~DELsf~eGd~lTvirr~d~~eteWWwa~ln-g~eGyVPRnylgLyPriKp 746 (752)
T KOG0515|consen 686 VYALWDYEAQ--FEDELSFDEGDELTVIRRDDEVETEWWWARLN-GEEGYVPRNYLGLYPRIKP 746 (752)
T ss_pred eEEeeccccc--ccccccccCCceeEEEecCCcchhhhhhHhhc-CcccccchhhhhcCccccc
Confidence 7889996544 556999999999999998644 79999954 9999999999987765444
No 17
>KOG2996|consensus
Probab=98.69 E-value=1.7e-08 Score=77.34 Aligned_cols=55 Identities=22% Similarity=0.572 Sum_probs=44.1
Q ss_pred EEeeccCCCCCCCCcceEecCcEEEEEEcc--CCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 9 ~al~df~~~~~~~~eLs~~~g~~l~vl~~~--~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
.|..+|++.+.+..+||+..||++.|+.+. +.+||+|... |+.||||++||++..
T Consensus 807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevn-grvGwFPstYVee~~ 863 (865)
T KOG2996|consen 807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVN-GRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeccccCCCchhhcccccCCEEEEehhccccCceecceec-CcccccccccccccC
Confidence 444444455666679999999999999875 4589999987 999999999998753
No 18
>KOG2546|consensus
Probab=98.68 E-value=9.4e-09 Score=75.90 Aligned_cols=54 Identities=26% Similarity=0.606 Sum_probs=47.1
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
++++|||+.... +||+|..|-+|+|+++++++||.+... |.+|+||.|||+.+.
T Consensus 426 Vv~iydy~~~Kd--deLsf~E~ailyv~kknddgw~EgV~~-~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 426 VVAIYDYTADKD--DELSFAEGAILYVLKKNDDGWYEGVQD-GVTGLFPGNYVEPLK 479 (483)
T ss_pred HHhhcccccccc--cccccccccEEEEEEecCCcchhheec-CcceeccCccccccc
Confidence 678999765444 599999999999999999999999876 889999999998764
No 19
>KOG2856|consensus
Probab=98.62 E-value=8.4e-09 Score=75.17 Aligned_cols=56 Identities=27% Similarity=0.532 Sum_probs=45.7
Q ss_pred eEEEEeeccCCCCCCCCcceEecCcEEEEEEccCC-CeEEEEeCCCceEEEeCCcEEec
Q psy6759 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK-DWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 6 ~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~-~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
+.++|||||... ..+||+|+.|+.|..+.+.+. +|=+||...|+.|++|.|||+-+
T Consensus 415 v~vraLYDY~gq--E~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQ--EGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcc--cccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 458999996654 445999999999998887655 56688888799999999999743
No 20
>KOG4348|consensus
Probab=98.56 E-value=2.1e-08 Score=74.57 Aligned_cols=57 Identities=18% Similarity=0.395 Sum_probs=49.0
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecccc
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~~ 66 (100)
.|++.|.|..+.. +||.|..||+|.|+.+..++||.|... |+.|+||+|||.++...
T Consensus 102 ~c~v~f~Y~pqnd--DELelkVGDiIeli~eVEeGWw~G~Ln-gk~GmFPsNFVkel~~~ 158 (627)
T KOG4348|consen 102 ICVVTFAYSPQND--DELELKVGDIIELISEVEEGWWKGKLN-GKVGMFPSNFVKELPTP 158 (627)
T ss_pred eEEEEEeecCCCC--ceeeeeeccHHHhhhHhhhhhhhceec-CcccccchhhceecCCC
Confidence 4888888655544 599999999999999988999999887 99999999999987543
No 21
>KOG1029|consensus
Probab=98.53 E-value=5.2e-08 Score=76.54 Aligned_cols=59 Identities=22% Similarity=0.482 Sum_probs=46.3
Q ss_pred eEEEEeeccCCCCCCCCcceEecCcEEEEEEcc--CCCeEEEEeCCCceEEEeCCcEEeccccC
Q psy6759 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYKKLS 67 (100)
Q Consensus 6 ~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~--~~~ww~~~~~~g~~G~vP~~yv~~~~~~~ 67 (100)
+.++|||.|.+...+ |++|.+||+|.|..+. .++|..|... |++||||.+||+.+....
T Consensus 694 vkyrAly~FeaRs~d--Eisf~pGDII~V~esq~aEPGWlaGel~-gktGWFPenyvEki~~~e 754 (1118)
T KOG1029|consen 694 VKYRALYPFEARSHD--EISFEPGDIIIVFESQAAEPGWLAGELR-GKTGWFPENYVEKIPAVE 754 (1118)
T ss_pred EEEeeecccccCCcc--cccccCCCEEEEehhccCCcccccceec-cccCcCcHHHHhhcccCC
Confidence 468999998766555 9999999999887764 3456566555 999999999999875444
No 22
>KOG4225|consensus
Probab=98.50 E-value=1.2e-07 Score=70.39 Aligned_cols=54 Identities=20% Similarity=0.463 Sum_probs=45.2
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEe-CCCceEEEeCCcEEe
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEV 62 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~-~~g~~G~vP~~yv~~ 62 (100)
.++|||.|..+ +++||-|+.||+|.|+.+.+++|+.|.. .+|+.|.||.|||+.
T Consensus 434 ~yrAly~Y~pq--nedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQ--NEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCC--CchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 47999996544 5569999999999999999999998833 248999999999963
No 23
>KOG4348|consensus
Probab=98.48 E-value=1.7e-07 Score=69.83 Aligned_cols=55 Identities=25% Similarity=0.547 Sum_probs=47.1
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEcc--CCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT--NKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~--~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
+|+++|.|..+.. +||.+..|+++.+|.++ +.+||.|... |+.|+||-||++.+.
T Consensus 263 ycrv~F~Ye~qnd--DELt~KEgdil~lItK~cgdaGWweGELn-Gk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 263 YCRVKFVYEPQND--DELTLKEGDILILITKNCGDAGWWEGELN-GKKGVFPDNFVELVQ 319 (627)
T ss_pred heeeeeeecCCCc--cceeeccccEEEEecccccccceeeeeec-CccccCCchhhhhcC
Confidence 7999999766555 59999999999999886 4579999986 999999999998764
No 24
>KOG3655|consensus
Probab=98.43 E-value=5.6e-08 Score=72.58 Aligned_cols=55 Identities=27% Similarity=0.596 Sum_probs=48.3
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
.++|+||| ++.+..+++|.++++|.+|+..+.+||.+.-.+|..|+||+|||+.+
T Consensus 429 ~A~A~~dy--qAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 429 TARALYDY--QAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred Cccccccc--cccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 37899995 45566799999999999999999999999988899999999999754
No 25
>KOG3875|consensus
Probab=98.37 E-value=5.2e-08 Score=69.67 Aligned_cols=57 Identities=21% Similarity=0.480 Sum_probs=46.2
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccC-----CCeEEEEeCC-CceEEEeCCcEEeccc
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-----KDWWQVIRSS-GKPFYVPASYVEVYKK 65 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~-----~~ww~~~~~~-g~~G~vP~~yv~~~~~ 65 (100)
.++|+|||- +.++.||+|++||.+.|+.+++ .+||..+..+ +.+|+||.|||+.+..
T Consensus 270 ~arA~YdF~--a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 270 FARALYDFV--ARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHhhhh--cCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 368899965 4455799999999999887763 3699888874 5789999999998854
No 26
>KOG3601|consensus
Probab=98.28 E-value=3.9e-07 Score=62.07 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=47.5
Q ss_pred eEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 6 ~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
.+.+++|||.+. .+.+|.|++|+.+.++...+..||.|+.. |..|+||++|+...
T Consensus 164 ~yqQa~~df~~~--pp~ql~f~~gq~~~v~~~ss~~ww~Gs~l-g~agiFpagyv~p~ 218 (222)
T KOG3601|consen 164 YYQQALYDFQPQ--PPGQLAFRRGQQIQVLDSSSPFWWFGSKL-GRAGIFPAGYVAPS 218 (222)
T ss_pred hhhhhcCCCCCC--CchhhccccCCcceeecCCCcchhhcccc-CceeeecCcccccc
Confidence 356899997755 44599999999999999999999999987 89999999999543
No 27
>KOG3557|consensus
Probab=98.22 E-value=2.8e-07 Score=71.11 Aligned_cols=61 Identities=25% Similarity=0.571 Sum_probs=50.6
Q ss_pred CeEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEeccccCC
Q psy6759 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68 (100)
Q Consensus 5 ~~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~~~~ 68 (100)
..++.++|||. +.+..||++.+|+++.|+.+. ..||.+++..|+.||||++.+..+.....
T Consensus 500 ~k~~~~~Ydf~--arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~~G~~GyvP~nIL~~~~~~~~ 560 (721)
T KOG3557|consen 500 KKWVLVLYDFQ--ARNSSELSVKKGEVLEVLDDG-RKWWKVKNGHGRAGYVPSNILAPLQPEHT 560 (721)
T ss_pred ceeeeeehhhh--cccchhhhhhhhhhhhhhhcc-ccceeccCccCCCCCcchhhhccCCCccc
Confidence 34688899965 445569999999999999877 78999999999999999999988754443
No 28
>KOG1843|consensus
Probab=98.21 E-value=7.5e-07 Score=65.81 Aligned_cols=53 Identities=28% Similarity=0.583 Sum_probs=45.3
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCC--CeEEEEeCCCceEEEeCCcEEe
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK--DWWQVIRSSGKPFYVPASYVEV 62 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~--~ww~~~~~~g~~G~vP~~yv~~ 62 (100)
.+.++|+|. ++.+.+|+|++||+|.++++.+. +||+++.. +.+|+||.+||+.
T Consensus 418 ~a~a~ysfa--ge~~GDl~f~kgDii~il~ks~s~~dwwtgr~~-~~egifPanyv~~ 472 (473)
T KOG1843|consen 418 IATALYSFA--GEQPGDLSFQKGDIITILKKSDSANDWWTGRGN-GYEGIFPANYVSL 472 (473)
T ss_pred eeeeeehhc--cCCCCCcccccCceEEEecCCcchhhHHHhhcc-ccccccccceecc
Confidence 478999965 55667999999999999998754 79999986 8999999999963
No 29
>KOG4278|consensus
Probab=98.10 E-value=4.9e-06 Score=65.28 Aligned_cols=55 Identities=29% Similarity=0.545 Sum_probs=45.9
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEcc-CCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~-~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
..+|||||-+.+.+ .|++.+|+.+.||.=. +.+|-.++..+|+ ||||+||+..+.
T Consensus 92 LFVALYDFvasGdn--tLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvN 147 (1157)
T KOG4278|consen 92 LFVALYDFVASGDN--TLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVN 147 (1157)
T ss_pred eeEeeeeeeccccc--eeeeecCceEEEeeecCCCcceeecccCCC-cccccccccccc
Confidence 37899998777766 9999999999999865 5678788877666 999999998764
No 30
>KOG1702|consensus
Probab=98.05 E-value=6.3e-06 Score=56.26 Aligned_cols=56 Identities=21% Similarity=0.464 Sum_probs=44.7
Q ss_pred eEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEe-CCCceEEEeCCcEEec
Q psy6759 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVY 63 (100)
Q Consensus 6 ~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~-~~g~~G~vP~~yv~~~ 63 (100)
...+|.|||. +.+.++++|+-||.|......+++|..+.. .+|.+|..|+||++.+
T Consensus 208 ktyra~ydys--aqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDYS--AQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccCc--ccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 3578899965 556679999999999888888888855544 4589999999999753
No 31
>KOG0197|consensus
Probab=97.99 E-value=3.8e-06 Score=63.36 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=57.4
Q ss_pred EEEEeeccCCCCCCCCcceEecCcE-EEEEEccCCCeEEEEeC-CCceEEEeCCcEEeccc-----cCCCCCCcccccCh
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEK-LFLIKKTNKDWWQVIRS-SGKPFYVPASYVEVYKK-----LSNGNRNNVENINP 79 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~-l~vl~~~~~~ww~~~~~-~g~~G~vP~~yv~~~~~-----~~~~~~~~~~~~~~ 79 (100)
.++|+|||... ...+|+|.+|+. ..+++..+..||.++.. .+..|++|+|||..... .-....+...++++
T Consensus 13 ~~valyd~~s~--~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~isR 90 (468)
T KOG0197|consen 13 IVVALYDYASR--TPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKISR 90 (468)
T ss_pred eEEEeccccCC--CccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhccccH
Confidence 47899996544 456999999999 77888888999998775 58999999999986421 11112333444555
Q ss_pred hhhhhccCCccc
Q psy6759 80 TMEKTRSYSEGN 91 (100)
Q Consensus 80 ~~~~~~~~~~~~ 91 (100)
.....+.+.+++
T Consensus 91 ~~ae~~ll~p~~ 102 (468)
T KOG0197|consen 91 EEAERQLLAPEN 102 (468)
T ss_pred HHHHHhhcCCCC
Confidence 444445555554
No 32
>KOG0609|consensus
Probab=97.83 E-value=4.9e-06 Score=63.26 Aligned_cols=58 Identities=24% Similarity=0.534 Sum_probs=46.7
Q ss_pred eEEEEeeccCCCCCC-----CCcceEecCcEEEEEEccCCCeEEEEeCC----CceEEEeCCcEEec
Q psy6759 6 VTLKVLYDFDYSTKD-----GKYVRIQEGEKLFLIKKTNKDWWQVIRSS----GKPFYVPASYVEVY 63 (100)
Q Consensus 6 ~~~~al~df~~~~~~-----~~eLs~~~g~~l~vl~~~~~~ww~~~~~~----g~~G~vP~~yv~~~ 63 (100)
.+++|+|||+....+ ...|+|++||++.|+.+++..||+++... +..|++|+...++.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence 468999998764432 36789999999999999999999998752 46799999877654
No 33
>KOG3523|consensus
Probab=97.79 E-value=1.1e-06 Score=67.67 Aligned_cols=60 Identities=18% Similarity=0.368 Sum_probs=48.8
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEe-CCCceEEEeCCcEEeccccCCC
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVYKKLSNG 69 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~-~~g~~G~vP~~yv~~~~~~~~~ 69 (100)
+.+...|. +..+++|++..+|++.|+++..++|..|.. .+|..||||.+|+++|......
T Consensus 611 v~~~~sy~--a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~~r 671 (695)
T KOG3523|consen 611 VQCVHSYK--AKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPHTR 671 (695)
T ss_pred hheeeccc--cCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHHHH
Confidence 56667744 445569999999999999999999998876 5789999999999998654443
No 34
>KOG2528|consensus
Probab=97.72 E-value=1.1e-05 Score=60.20 Aligned_cols=56 Identities=32% Similarity=0.494 Sum_probs=48.4
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEcc-CCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~-~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
..+++|||... ...+++...++++.++..+ ..+||.+++..|..|+||..|++..+
T Consensus 4 k~RamyDf~~E--~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSE--GHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhc--ccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 37899998766 4469999999999998876 56799999999999999999999875
No 35
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=97.55 E-value=0.00014 Score=43.28 Aligned_cols=42 Identities=33% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEe
Q psy6759 21 GKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62 (100)
Q Consensus 21 ~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~ 62 (100)
..+|.+.+|+++.||+.++..-|.+|+..|+-||||.+++..
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~ 71 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLP 71 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS--
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccC
Confidence 469999999999999999999999999999999999998854
No 36
>KOG3632|consensus
Probab=97.45 E-value=0.00014 Score=58.96 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=45.9
Q ss_pred EEEEeeccCCCCC------CCCcceEecCcEEEEEEccCC-CeEEEEeCCCceEEEeCCcEEecccc
Q psy6759 7 TLKVLYDFDYSTK------DGKYVRIQEGEKLFLIKKTNK-DWWQVIRSSGKPFYVPASYVEVYKKL 66 (100)
Q Consensus 7 ~~~al~df~~~~~------~~~eLs~~~g~~l~vl~~~~~-~ww~~~~~~g~~G~vP~~yv~~~~~~ 66 (100)
.++|+|||+.-.. .+.||+|++|++|.|+.+.+. +.+.+... |..|+||+|+|.++...
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~n-gr~GlIPcNmvae~~vd 1205 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELN-GRRGLIPCNMVAEQPVD 1205 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccc-cccccccccccccccCC
Confidence 4789999965321 236999999999999997654 56777765 89999999999987543
No 37
>KOG4773|consensus
Probab=97.22 E-value=0.00013 Score=53.25 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=45.6
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
..+++||..+.. .||.|..|+++.++.+++..||.|+.+ +.+||+|.+|+..+.
T Consensus 178 ~~a~~df~gns~--~EL~l~agdV~~~~~r~ek~W~~gk~R-~~~g~yp~sF~~~ld 231 (386)
T KOG4773|consen 178 AEASFDFPGNSK--LELNLVAGDVEFLLSRDEKYWLLGKVR-GLTGYYPDSFVKQLD 231 (386)
T ss_pred HHhhccCCCCcc--ceeeeehhhHHHHHhhcccceeeeeec-cccccccHHhhhhhc
Confidence 356778655544 599999999999999999999999887 899999999998773
No 38
>KOG4575|consensus
Probab=97.19 E-value=0.00048 Score=53.88 Aligned_cols=57 Identities=14% Similarity=0.431 Sum_probs=44.1
Q ss_pred CeEEEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeC-CCceEEEeCCcEEec
Q psy6759 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRS-SGKPFYVPASYVEVY 63 (100)
Q Consensus 5 ~~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~-~g~~G~vP~~yv~~~ 63 (100)
.+.++|+|.+. +...++|-|..||++.++.-.+.-||-.... ....|+||+|||.-+
T Consensus 8 p~~vrA~y~w~--ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 8 PCMVRALYAWP--GEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred CceEEeeccCC--CCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 35689999954 4555699999999999999886666655554 357899999999544
No 39
>KOG2222|consensus
Probab=97.11 E-value=7.1e-05 Score=57.02 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=45.8
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
++|+.||... +.+||.|++++++.++...+...|.+... |-.||||..||+.+.
T Consensus 551 akal~df~r~--dddelgfrkndiitiisekdehcwvgeln-glrgwfpakfvelld 604 (848)
T KOG2222|consen 551 AKALHDFARE--DDDELGFRKNDIITIISEKDEHCWVGELN-GLRGWFPAKFVELLD 604 (848)
T ss_pred HHHHhhhhhc--cccccccccccEEEEeecCCcceeeeccc-cccccchHHHHHHHH
Confidence 5678887544 44699999999999999988999999886 899999999998664
No 40
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=96.93 E-value=0.0036 Score=33.49 Aligned_cols=40 Identities=25% Similarity=0.540 Sum_probs=32.4
Q ss_pred CcceEecCcEEEEEEccCCC-eEEEEeCCCceEEEeCCcEE
Q psy6759 22 KYVRIQEGEKLFLIKKTNKD-WWQVIRSSGKPFYVPASYVE 61 (100)
Q Consensus 22 ~eLs~~~g~~l~vl~~~~~~-ww~~~~~~g~~G~vP~~yv~ 61 (100)
.--.+..|+.+.++...... |.+++..+|..|||+..|++
T Consensus 15 ~i~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 15 VIGQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred hhEEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 34568899999999987555 99997767899999999984
No 41
>KOG3775|consensus
Probab=96.92 E-value=0.00059 Score=50.48 Aligned_cols=55 Identities=15% Similarity=0.351 Sum_probs=45.9
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEe-CCCceEEEeCCcEEecc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVYK 64 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~-~~g~~G~vP~~yv~~~~ 64 (100)
-++++.|-....+ ||-+..||.+.|-...++.|..+-+ ++|+.|.||+.|+.++.
T Consensus 265 HR~~~rFvPRHpD--ELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 265 HRAVFRFVPRHPD--ELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhhccCCCcc--eeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 4677776555554 9999999999998888888999888 46899999999999874
No 42
>KOG3601|consensus
Probab=96.90 E-value=0.00012 Score=50.12 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=41.5
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccC-CCeEEEEeCCCceEEEeCCcEEe
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVEV 62 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~-~~ww~~~~~~g~~G~vP~~yv~~ 62 (100)
+.++++|..+..+ ||+|.+|+.+.++...+ .+|..+... |..|++|.||...
T Consensus 3 a~a~n~f~a~i~d--ELsFlkg~~lk~l~~~d~~nw~~ael~-g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRD--ELSFLKGDNLKILNMEDDINWYKAELD-GPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcc--cceeecCCceEecchHHhhhhhhHhhc-CccccCccccccc
Confidence 4578888766665 99999999998888753 367777765 8999999999853
No 43
>KOG3771|consensus
Probab=96.48 E-value=0.0013 Score=49.66 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=36.9
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEcc-CCCeEEEEeCCCceEEEeCCcE
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYV 60 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~-~~~ww~~~~~~g~~G~vP~~yv 60 (100)
.+.++|||..+ +.++|+|+.|+.|.|+... ..+||.|+.. |..+-+|.+|+
T Consensus 402 ~v~a~~dy~a~--~~deLsf~~gd~i~vi~s~~~~e~~eg~~m-g~ke~~~~~~~ 453 (460)
T KOG3771|consen 402 KVKALHDYAAQ--DTDELSFEAGDVILVIPSDNPEEQDEGWLM-GVKESDWNGLF 453 (460)
T ss_pred ceecccccccc--ccccccccCCCEEEEecCCCccchhhHHHh-hhcccccccce
Confidence 47889996544 5569999999999999865 3478888776 54444445554
No 44
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.23 E-value=0.02 Score=31.25 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=31.5
Q ss_pred cceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcE
Q psy6759 23 YVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60 (100)
Q Consensus 23 eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv 60 (100)
--.+..|+.+.++.....+|.+.+..+|..||++..++
T Consensus 24 ~~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 24 IGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred eEEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 44588999999998875589999988799999987665
No 45
>KOG4792|consensus
Probab=96.16 E-value=0.012 Score=41.08 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=44.0
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
++++++--..+=+...|.+.+|+++.|.+..-.+-|.+... |+.|.||..||....
T Consensus 230 Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEln-Gk~G~fPfThvrf~d 285 (293)
T KOG4792|consen 230 ARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELN-GKIGHFPFTHVRFTD 285 (293)
T ss_pred eeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeec-CccccccceeEEeec
Confidence 45554432333345689999999999999988888999987 999999999998654
No 46
>KOG3725|consensus
Probab=96.11 E-value=0.0014 Score=46.51 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=42.7
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEc--cCCCeEEEEeCCCceEEEeCCcEEe
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKK--TNKDWWQVIRSSGKPFYVPASYVEV 62 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~--~~~~ww~~~~~~g~~G~vP~~yv~~ 62 (100)
.++++|||+ +..+.||++-.+++|.|..- .+.+|..+.+. ++.|-+|..|++.
T Consensus 319 kArVlyDYd--Aa~s~ElslladeiitVyslpGMD~dwlmgErG-nkkGKvPvtYlEL 373 (375)
T KOG3725|consen 319 KARVLYDYD--AALSQELSLLADEIITVYSLPGMDADWLMGERG-NKKGKVPVTYLEL 373 (375)
T ss_pred ceeeeeccc--ccchhhhhhhhcceEEEEecCCCChHHhhhhhc-CCCCCcchhHHHh
Confidence 478999965 44556999999999987654 46789888876 7889999999864
No 47
>KOG1451|consensus
Probab=96.07 E-value=0.0057 Score=47.78 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=40.0
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEc-cCCCeEEEEeCCCceEEEeCCcEEe
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKK-TNKDWWQVIRSSGKPFYVPASYVEV 62 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~-~~~~ww~~~~~~g~~G~vP~~yv~~ 62 (100)
+.++|. .++....+++|..|.++.-... ..++|..|+.. |++|++|+|||+.
T Consensus 759 ~k~lyA--c~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLn-Gktglip~nyve~ 811 (812)
T KOG1451|consen 759 VKTLYA--CTADHHSELSFEPGTIFTNVYESNEDGWLVGTLN-GKTGLIPSNYVEP 811 (812)
T ss_pred ccceec--cCCCCcccccccCcceeeeecccCCCCceeeecC-CCcccCcccccCc
Confidence 455666 5566667999999999986664 45667777765 9999999999975
No 48
>KOG4429|consensus
Probab=96.01 E-value=0.0015 Score=47.13 Aligned_cols=53 Identities=15% Similarity=0.042 Sum_probs=44.0
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
|.++|.|..+..+ +|...+|++..+-++...+||.++.. |..|.||+.|+++.
T Consensus 366 cdafYSfqarqdd--el~~e~gditif~Ekkeeg~~f~rl~-gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 366 CDAFYSFQARQDD--ELGGEIGDITIFDEKKEEGPTFCRLL-GDFEHFHAAEIEEA 418 (421)
T ss_pred hhhhhcccccccc--ccCCcccceeeecCcccCCCceeeec-cccCCCcHHHHHHh
Confidence 6788997665554 99999999997777778899999987 88899999888764
No 49
>KOG0199|consensus
Probab=95.56 E-value=0.04 Score=44.46 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=40.8
Q ss_pred eEEEEeeccCCCCCCCCcceEecCcEEEEEEccCC-CeEEEEe-CCCceEEEeCCcEEe
Q psy6759 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNK-DWWQVIR-SSGKPFYVPASYVEV 62 (100)
Q Consensus 6 ~~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~-~ww~~~~-~~g~~G~vP~~yv~~ 62 (100)
..+++.|| +... +.|.+.+||.|.||+.... -||.+.+ ++++.|.||.+-|..
T Consensus 377 ~~a~~~~d--~~ep--~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 377 AVARETYD--SIEP--GALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred ceeeeecc--ccCC--CceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 34666777 4444 4999999999999998743 5899966 457899999988873
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.55 E-value=0.026 Score=38.68 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=34.4
Q ss_pred cceEecCcEEEEEEccC-CCeEEEEeCCCceEEEeCCcEEec
Q psy6759 23 YVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 23 eLs~~~g~~l~vl~~~~-~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
--.+..|+.+.++...+ .+|.+++..+|.+|||+..|+...
T Consensus 47 v~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 47 VGTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 34678999999998764 589999988899999999998754
No 51
>KOG3565|consensus
Probab=93.57 E-value=0.012 Score=46.55 Aligned_cols=55 Identities=35% Similarity=0.571 Sum_probs=42.0
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEccCCC-eEEEE-eCCCceEEEeCCcEEec
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD-WWQVI-RSSGKPFYVPASYVEVY 63 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~-ww~~~-~~~g~~G~vP~~yv~~~ 63 (100)
.+.|+|.|.. .+.+++++..|+++.+++.+..+ |=+++ ...+..|++|.+|+...
T Consensus 580 ~~~a~~~~~~--~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 580 TSKALYAFEG--QSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred ceecccCcCC--CCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 3677788654 45569999999999999987554 54666 35589999999999754
No 52
>KOG3632|consensus
Probab=93.42 E-value=0.14 Score=42.45 Aligned_cols=58 Identities=14% Similarity=0.336 Sum_probs=45.7
Q ss_pred EEEeeccCC-CC---CCCCcceEecCcEEEEEEccCC-CeEEEEeCCCceEEEeCCcEEeccc
Q psy6759 8 LKVLYDFDY-ST---KDGKYVRIQEGEKLFLIKKTNK-DWWQVIRSSGKPFYVPASYVEVYKK 65 (100)
Q Consensus 8 ~~al~df~~-~~---~~~~eLs~~~g~~l~vl~~~~~-~ww~~~~~~g~~G~vP~~yv~~~~~ 65 (100)
+.|.|.|.. .+ ..+.+|.+..|+.|+|....+. ..+.+...+|..|++|+|||+.+..
T Consensus 450 ~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 450 FTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD 512 (1335)
T ss_pred EEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence 577888753 22 2347999999999999987544 5678998889999999999998743
No 53
>KOG0040|consensus
Probab=93.24 E-value=0.0013 Score=55.77 Aligned_cols=56 Identities=34% Similarity=0.675 Sum_probs=47.2
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecccc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~~~ 66 (100)
+.|+|+|. ..++.+.+.++||++.++...+.+||.++.. ...|++|..|++.+.+.
T Consensus 971 v~alyd~q--~kSprev~mKkgDvltll~s~nkdwwkve~~-d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 971 VLALYDYQ--EKSPREVTMKKGDVLTLLNSINKDWWKVEVN-DRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHH--hcCHHHHHHhhhhHHHHHhhcccccccchhh-hhcCcchHHHHHHhccC
Confidence 46789954 5555699999999999999999999999987 67899999999887544
No 54
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.61 E-value=0.38 Score=25.59 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=29.0
Q ss_pred CcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcE
Q psy6759 22 KYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60 (100)
Q Consensus 22 ~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv 60 (100)
-...+.+|..+.++.. ..+|-+.+ .+|..||++.+.+
T Consensus 17 vv~~l~~g~~v~v~~~-~~~W~~V~-~~g~~GWv~~~~l 53 (55)
T PF06347_consen 17 VVARLEPGVPVRVIEC-RGGWCKVR-ADGRTGWVHKSLL 53 (55)
T ss_pred EEEEECCCCEEEEEEc-cCCeEEEE-ECCeEEeEEeeec
Confidence 3456778888888754 47899999 6799999998765
No 55
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=91.80 E-value=0.4 Score=36.90 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=34.2
Q ss_pred cceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEec
Q psy6759 23 YVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 23 eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
.-++..|+.+.|+.....+|++.+..+|++|||-..|+..-
T Consensus 102 Igsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 102 ITSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eeeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 44788999999986555689999998899999999999753
No 56
>KOG3812|consensus
Probab=91.16 E-value=0.12 Score=38.34 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=35.8
Q ss_pred EEEeeccCCCCCC-----CCcceEecCcEEEEEEccCCCeEEEEeC--CCceEEEeC
Q psy6759 8 LKVLYDFDYSTKD-----GKYVRIQEGEKLFLIKKTNKDWWQVIRS--SGKPFYVPA 57 (100)
Q Consensus 8 ~~al~df~~~~~~-----~~eLs~~~g~~l~vl~~~~~~ww~~~~~--~g~~G~vP~ 57 (100)
|++.-+|++.-.+ ...++|...|.|.|-.+-+.+||-||.- ....||||+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 3445565443322 2578999999998988888999988763 246799997
No 57
>KOG2996|consensus
Probab=90.64 E-value=0.18 Score=39.79 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=34.2
Q ss_pred CcceEecCcEEEEEEcc-CCCeEEEEeC-CCceEEEeCCcEEecc
Q psy6759 22 KYVRIQEGEKLFLIKKT-NKDWWQVIRS-SGKPFYVPASYVEVYK 64 (100)
Q Consensus 22 ~eLs~~~g~~l~vl~~~-~~~ww~~~~~-~g~~G~vP~~yv~~~~ 64 (100)
--|.++.|+++.++.-+ ...||.+++. .+..|+||++-|....
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~ 669 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCP 669 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCC
Confidence 36789999999887764 5679999985 3578999999987553
No 58
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=88.87 E-value=1.1 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=33.5
Q ss_pred eEecCcEEEEEEccCC-CeEEEEeCCCceEEEeCCcEEec
Q psy6759 25 RIQEGEKLFLIKKTNK-DWWQVIRSSGKPFYVPASYVEVY 63 (100)
Q Consensus 25 s~~~g~~l~vl~~~~~-~ww~~~~~~g~~G~vP~~yv~~~ 63 (100)
+++.|+.+.|+..... .|.+.+...|..||||..++..-
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e 88 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSE 88 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccc
Confidence 6889999999998754 68899998899999999888654
No 59
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=77.37 E-value=3.6 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.750 Sum_probs=19.5
Q ss_pred eEecCcEEEEEEccCCCeEEEEeC
Q psy6759 25 RIQEGEKLFLIKKTNKDWWQVIRS 48 (100)
Q Consensus 25 s~~~g~~l~vl~~~~~~ww~~~~~ 48 (100)
.|.+|+.+.+..+.++.||.++..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 367899999988777899988664
No 60
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=69.74 E-value=6.5 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.692 Sum_probs=16.5
Q ss_pred ceEecCcEEEEEEcc------CCCeEEEEe
Q psy6759 24 VRIQEGEKLFLIKKT------NKDWWQVIR 47 (100)
Q Consensus 24 Ls~~~g~~l~vl~~~------~~~ww~~~~ 47 (100)
|+++.|+.+.|-... +.+||-+..
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 678888888554433 468998754
No 61
>KOG3705|consensus
Probab=63.94 E-value=8.2 Score=29.60 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=34.3
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeC-CCceEEEeCCcEEe
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRS-SGKPFYVPASYVEV 62 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~-~g~~G~vP~~yv~~ 62 (100)
++++++-. .....++.++.||++-|-...=++.-+|.+. .++.|+||+-=+.+
T Consensus 512 ~ivi~aH~--prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 512 VIVIEAHI--PRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred eEEEEecC--CCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 45666633 3344599999999997765432222345553 36899999976665
No 62
>KOG0708|consensus
Probab=62.85 E-value=2.5 Score=31.49 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=39.8
Q ss_pred CeEEEEeeccCCCCCC---CCcceEecCcEEEEEEccCCCeEEEEeCCC-----ceEEEeCCcEEe
Q psy6759 5 DVTLKVLYDFDYSTKD---GKYVRIQEGEKLFLIKKTNKDWWQVIRSSG-----KPFYVPASYVEV 62 (100)
Q Consensus 5 ~~~~~al~df~~~~~~---~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g-----~~G~vP~~yv~~ 62 (100)
..++.+++||+-.... ...+++..|+++.++...+.+||.++...+ ..|.+|.--..+
T Consensus 66 ~~~v~~~~d~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~ 131 (359)
T KOG0708|consen 66 CLYVDALFDYDLDRGSPGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRA 131 (359)
T ss_pred eeEeeccccccccCCCCCcchhhhhhhhhhhhccccccHHHHHhhccCCCcccccccccccccccc
Confidence 4567888887543221 145678889999999999899998877532 457777654443
No 63
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=55.42 E-value=20 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.420 Sum_probs=31.5
Q ss_pred eEecCcEEEEEEcc-----CCCeEEEEeCCCceEEEeCCcEEeccc
Q psy6759 25 RIQEGEKLFLIKKT-----NKDWWQVIRSSGKPFYVPASYVEVYKK 65 (100)
Q Consensus 25 s~~~g~~l~vl~~~-----~~~ww~~~~~~g~~G~vP~~yv~~~~~ 65 (100)
...=|+++.|.++. +.+|.+....+|..||+...|++.++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (549)
T PRK13545 371 VANFGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKS 416 (549)
T ss_pred EEecCceEEEcccccccccCcceEEEEecCCccceeeeeeeeeccc
Confidence 34457777776654 337999999899999999999988753
No 64
>KOG3580|consensus
Probab=52.94 E-value=28 Score=28.31 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=35.4
Q ss_pred EEEEeeccCCCCCCCCcceEecCcEEEEEEcc----CCCeEEEEeCCC----ceEEEeCCcE
Q psy6759 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKT----NKDWWQVIRSSG----KPFYVPASYV 60 (100)
Q Consensus 7 ~~~al~df~~~~~~~~eLs~~~g~~l~vl~~~----~~~ww~~~~~~g----~~G~vP~~yv 60 (100)
+.+..|. +....+..|.|.+|+++.+++-. ...|..+|..+. ..|++|....
T Consensus 506 yIRtHFE--~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksR 565 (1027)
T KOG3580|consen 506 YIRTHFE--CEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSR 565 (1027)
T ss_pred EEeeeee--ecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccH
Confidence 3455565 55566679999999999988753 235766666432 5688887443
No 65
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.97 E-value=12 Score=24.72 Aligned_cols=36 Identities=14% Similarity=0.387 Sum_probs=28.3
Q ss_pred eEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEE
Q psy6759 25 RIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61 (100)
Q Consensus 25 s~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~ 61 (100)
.+.+|.-+.|+.+. ++|-+.+..+|..|||-.+-++
T Consensus 60 y~k~GlPVEIvqEy-~~WRrirDadG~egWv~qslls 95 (171)
T COG3807 60 YLKKGLPVEIVQEY-DNWRRIRDADGTEGWVHQSLLS 95 (171)
T ss_pred eeccCCceehhhhh-hhhhheeCCCCCceeeeeeccc
Confidence 45677788888776 7798999999999999765554
No 66
>KOG4384|consensus
Probab=28.00 E-value=44 Score=25.03 Aligned_cols=56 Identities=25% Similarity=0.311 Sum_probs=42.1
Q ss_pred EEEeeccCCCCCCCCcceEecCcEEEEEEccCCCeEEEEeCCCceEEEeCCcEEecc
Q psy6759 8 LKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64 (100)
Q Consensus 8 ~~al~df~~~~~~~~eLs~~~g~~l~vl~~~~~~ww~~~~~~g~~G~vP~~yv~~~~ 64 (100)
+++.-+|.....+.++|-+..|+++.++.+..-.-|.+-.. ++.|.|+.-|+..+.
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~-~kv~~f~~~~v~~~s 194 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLN-NKVGSFKFIYVDVIS 194 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCcccccccccc-Ccccccccceecccc
Confidence 34455665555566789999999999999886666776654 788999998988764
No 67
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=27.96 E-value=76 Score=17.41 Aligned_cols=23 Identities=9% Similarity=0.384 Sum_probs=13.2
Q ss_pred EecCcEEEEEEccC---CCeEEEEeC
Q psy6759 26 IQEGEKLFLIKKTN---KDWWQVIRS 48 (100)
Q Consensus 26 ~~~g~~l~vl~~~~---~~ww~~~~~ 48 (100)
|++|+.+.|....+ ..|+.+...
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~ 26 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVL 26 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEE
Confidence 67899999988663 358777653
No 68
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=27.00 E-value=1.1e+02 Score=16.41 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=22.3
Q ss_pred CcceEecCcEEEEEEcc-CCCeEEEEeCCCceEEEeC
Q psy6759 22 KYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPA 57 (100)
Q Consensus 22 ~eLs~~~g~~l~vl~~~-~~~ww~~~~~~g~~G~vP~ 57 (100)
++-.+..|+-+.|++.+ +..|..+... -..|||++
T Consensus 19 Q~s~l~~gtPv~i~H~S~D~~W~fV~t~-~~~GWV~s 54 (54)
T PF12913_consen 19 QNSALHPGTPVYILHTSRDGAWAFVQTP-FYSGWVKS 54 (54)
T ss_dssp EEEEE-TT-EEEEEEE-TTSSEEEEE-S-S-EEEEEG
T ss_pred hhcccCCCCCEEEEEECCCCCEEEEecC-CeeEeeeC
Confidence 35678899999999876 4567777765 57788874
No 69
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=26.36 E-value=1e+02 Score=16.97 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=19.1
Q ss_pred EecCcEEEEEEccCCCeEEEEeCC-CceEEE
Q psy6759 26 IQEGEKLFLIKKTNKDWWQVIRSS-GKPFYV 55 (100)
Q Consensus 26 ~~~g~~l~vl~~~~~~ww~~~~~~-g~~G~v 55 (100)
-+.|+++.|...+...-+.+|..+ |.++++
T Consensus 20 ~r~GeIveV~g~dG~PPY~VRw~D~Ghe~lv 50 (58)
T PF08940_consen 20 DRHGEIVEVRGPDGSPPYLVRWDDTGHESLV 50 (58)
T ss_dssp EEEEEEEE-S-SSS-S-EEEEETTTTEEEEE
T ss_pred CcEeEEEEEECCCCCCCEEEEecCCCcEEEE
Confidence 467888888887766678888876 766654
No 70
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=26.05 E-value=1e+02 Score=15.69 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=14.8
Q ss_pred EecCcEEEEEEccCCCeEEEEeC
Q psy6759 26 IQEGEKLFLIKKTNKDWWQVIRS 48 (100)
Q Consensus 26 ~~~g~~l~vl~~~~~~ww~~~~~ 48 (100)
+..|+.+.+.- .+..|++++..
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I~ 24 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARII 24 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEEE
Confidence 45677766665 56778888664
No 71
>KOG1314|consensus
Probab=21.30 E-value=76 Score=24.01 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=28.2
Q ss_pred CCCcceEecCcEEEEEEccCCCeEEEEe-------CCC---ceEEEeCCcEEec
Q psy6759 20 DGKYVRIQEGEKLFLIKKTNKDWWQVIR-------SSG---KPFYVPASYVEVY 63 (100)
Q Consensus 20 ~~~eLs~~~g~~l~vl~~~~~~ww~~~~-------~~g---~~G~vP~~yv~~~ 63 (100)
+..-+++++||.+.+..-. ..|..+.. ..+ -.|+||.+...+.
T Consensus 330 ddprisL~p~d~i~~tr~~-~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~ 382 (414)
T KOG1314|consen 330 DDPRISLPPGDGIKATRGF-NHWLYGEEILSEMFNESRERKIRGWFPRNCAVEK 382 (414)
T ss_pred CCcccccCCCcceeeeeee-ecccchhhhhhHHHhhcchhhhcccccccccccc
Confidence 3457899999998665544 56766622 111 4699999985443
Done!