RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6759
(100 letters)
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 55.1 bits (133), Expect = 5e-12
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
L + ++ V +++G+ L L+ TNKDWW+V + + +VPA+YV+ S
Sbjct: 4 PPLPPYSAGGRE---VTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLD--SG 57
Query: 69 GNRNNVENINPTMEKT 84
+ V + EK+
Sbjct: 58 TGKELVLALYDYQEKS 73
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 53.8 bits (130), Expect = 2e-11
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD-WWQVIRSSGKPFYVPASYVEVYKKLS 67
+Y F+ S++ + + EGE L L+++ D W +V R G YVP SY+ V S
Sbjct: 11 VAIYHFEGSSEG--TISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGPS 68
Query: 68 NG 69
+G
Sbjct: 69 SG 70
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 51.9 bits (125), Expect = 1e-10
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVEV 62
+V+YDF + + + + EGE + + W + + G+ VP YVE+
Sbjct: 13 RVMYDFAAEPGNNE-LTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEI 66
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 50.8 bits (122), Expect = 3e-10
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEV 62
KV+Y + S D + I+E E L +I+ +DW + G+ YVP Y++
Sbjct: 17 KVVYSYKASQPD--ELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF 69
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 50.7 bits (121), Expect = 1e-09
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV--IRSSGKPFYVPASYV 60
+ + LY+F D + + GE L + + +W+ I G P VP SYV
Sbjct: 1 MAPLFAVTLYEFKAERDDE--LDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58
Query: 61 EVYKKLSNGNRNNVENINP 79
+ + +V+ +
Sbjct: 59 RIIDLMDPAKYASVDTYDR 77
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 48.7 bits (117), Expect = 1e-09
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR--SSGKPFYVPASYVEV 62
KVLY + D + I G+K+ L+ + W I ++G+ VP +Y+ +
Sbjct: 5 KVLYAYVQKDDD--EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 48.8 bits (117), Expect = 2e-09
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
+ DF + ++GE L +I+K WW + G VP +Y+E Y +
Sbjct: 14 IAVGDFTAQQVGD--LTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 48.9 bits (117), Expect = 2e-09
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
E ++ + LYD+ + + ++ E+ L+ + WW+V +G YVP+SY+
Sbjct: 16 EPEETVVIALYDYQTNDPQE--LALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLV 73
Query: 62 VYKKLS 67
+
Sbjct: 74 EKSPNN 79
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 48.5 bits (116), Expect = 2e-09
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
LYD+ + + ++ E+ +L+ + WW+V +G Y P+SY+
Sbjct: 24 IALYDYQTNDPQE--LALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 47.7 bits (114), Expect = 4e-09
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEV 62
+D + YDF S + + +++G+ +F+ + W + K +VP +Y+
Sbjct: 1 KDPKFEAAYDFPGSGSSSE-LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTP 59
Query: 63 YK 64
YK
Sbjct: 60 YK 61
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 47.7 bits (114), Expect = 5e-09
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
++V + +D+ + + I++ E+L+L+ + K WW+V S K +VP++YVE
Sbjct: 6 EEVVVVAKFDYVAQQEQE--LDIKKNERLWLLDDS-KSWWRVRNSMNKTGFVPSNYVERK 62
Query: 64 KKLSNGNRNN 73
++
Sbjct: 63 NSARAAANSS 72
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 47.2 bits (113), Expect = 6e-09
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
K+LYDF + + + + E L +++ + WW++ SG+ YVP + + S+
Sbjct: 11 KILYDFTARNANE--LSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEASGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 47.5 bits (113), Expect = 6e-09
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPF---YVPASYVEVYKK 65
+ D++ + QEG + ++++ WW G +VP++Y+E
Sbjct: 14 VSIADYEGDEET---AGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS 70
Query: 66 LSN 68
+
Sbjct: 71 GPS 73
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 47.0 bits (112), Expect = 1e-08
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
LYD+ + V +++G+ L L+ TNKDWW+V + + +VPA+YV+ +
Sbjct: 6 LALYDYQEKSPRE--VTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLDPAQS 62
Query: 69 GNRNNVENINPT 80
+R N+ P
Sbjct: 63 ASRENLGGPPPV 74
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 46.5 bits (111), Expect = 1e-08
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+VLY+F+ + + +GEKL ++ +K WW V +G+ Y+P++ +E S+
Sbjct: 11 QVLYEFEARNPRE--LTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 47.5 bits (113), Expect = 1e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWW--QVIRSSGKPFYVPASYVEVYKKL 66
VLYDF D + GE LF+ N +W+ + I G P VP +V +
Sbjct: 9 IVLYDFKAEKADE--LTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66
Query: 67 SN 68
+
Sbjct: 67 TG 68
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 46.5 bits (111), Expect = 1e-08
Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
LYD+ + +++++G++ F+++++N WW+ +G+ Y+P++YV +
Sbjct: 12 VALYDYMPMNAND--LQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED 66
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 46.5 bits (111), Expect = 1e-08
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ L+DF+ + ++ + ++G+ L + K + WW S GK +P YVE Y +
Sbjct: 7 RALFDFNGNDEED--LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHHH 64
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 48.4 bits (115), Expect = 2e-08
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66
T + + D Y G + + G+ + +++K+ WW + K ++PAS++E
Sbjct: 13 TYRAIAD--YEKTSGSEMALSTGDVVEVVEKSESGWWFC-QMKAKRGWIPASFLEPLDSP 69
Query: 67 SNGNRNNVENINPTMEKTRSYSEGND 92
++Y+
Sbjct: 70 DETEDPEPNYAGEPYVAIKAYTAVEG 95
Score = 43.1 bits (101), Expect = 2e-06
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK-KLS 67
+ + D V + EGE + +I K WW + R Y P+ Y++ +S
Sbjct: 85 VAIKAYTAVEGD--EVSLLEGEAVEVIHKLLDGWWVI-RKDDVTGYFPSMYLQKSGQDVS 141
Query: 68 NGNRNNVENINPTMEKTRSYSEGNDKAMKQL 98
R P R+ + ++ K+L
Sbjct: 142 QAQRQIKRGAPPRRSSIRNAHSIHQRSRKRL 172
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 46.1 bits (110), Expect = 2e-08
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
+YDF + +R++ G++ +++K + WW+ G Y+P++YV K +
Sbjct: 8 MYDFQATEAHD--LRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN 62
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 44.9 bits (107), Expect = 4e-08
Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVY 63
+ YDF + + +++G+ +++ ++ W + K +VP +Y++ +
Sbjct: 4 EAAYDFP-GSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 45.4 bits (108), Expect = 4e-08
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
V+ ++ + +Q GE + +I+K WW V +S + +VPA+Y+E
Sbjct: 12 VVVSNYKKQENSE--LSLQAGEVVDVIEKNESGWWFV-STSEEQGWVPATYLEAQNS 65
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 44.8 bits (107), Expect = 4e-08
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
+ L+DF+ + ++ + ++G+ L + K + WW S GK +P YVE Y
Sbjct: 5 RALFDFNGNDEED--LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 45.0 bits (107), Expect = 5e-08
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K LY +D D + ++ E L + WW+ R++G+ +P++YV++
Sbjct: 9 KALYPYDADDDDAYEISFEQNEILQ-VSDIEGRWWKARRANGETGIIPSNYVQL 61
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 44.5 bits (106), Expect = 6e-08
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
++V + +D+ + I++ E+L+L+ + K WW+V ++ + YVP++YVE
Sbjct: 3 EEVIVIAKWDYTAQQDQE--LDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERK 59
Query: 64 KKLSN 68
+ +
Sbjct: 60 LEHHH 64
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 44.5 bits (106), Expect = 6e-08
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
VLYD+ + + +++G+ L L+ TNKDWW++ +G+ +VPA+Y++
Sbjct: 10 LVLYDYQEKSPRE--LTVKKGDILTLLNSTNKDWWKI-EVNGRQGFVPAAYLKK 60
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 45.0 bits (107), Expect = 6e-08
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
LYD+ + V +++G+ L L+ TNKDWW+V + + +VPA+YV+ +
Sbjct: 9 LALYDYQEKSPRE--VTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLDPAQS 65
Query: 69 GNRNNV 74
+R N+
Sbjct: 66 ASRENL 71
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 45.1 bits (107), Expect = 6e-08
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
LYD+ + V +++G+ L L+ TNKDWW+V + + +VPA+YV+
Sbjct: 21 LALYDYQEKSPRE--VTMKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLA 73
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 44.2 bits (105), Expect = 7e-08
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
K YDF ++ + + + + L ++ + WW+V +SG +VP + +++ +
Sbjct: 5 KSKYDFV--ARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMR 57
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 45.1 bits (107), Expect = 8e-08
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYKKLS 67
Y F + + ++GE + LI+K N++W++ I +G+ PASYV+V ++
Sbjct: 21 VAQYTFKGDLEVE--LSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPR 78
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 44.1 bits (105), Expect = 1e-07
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 1 MELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
ME LYDF S + + I +GEKL ++ + W ++ +VP++Y+
Sbjct: 1 MENDPNLFVALYDFVASGDNT--LSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
Query: 61 EVYK 64
Sbjct: 59 TPVN 62
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 43.8 bits (104), Expect = 1e-07
Identities = 13/62 (20%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYKKLS 67
++F+ T+ + ++GE++ L+++ +++W++ I + + P +YV+V S
Sbjct: 11 IAKFNFNGDTQVE--MSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGPS 68
Query: 68 NG 69
+G
Sbjct: 69 SG 70
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 43.8 bits (104), Expect = 1e-07
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ D+ + + + GEK+ ++++T DWW +G Y+PA++V + S+
Sbjct: 11 VAIADYAATDETQ--LSFLRGEKILILRQTTADWWWG-ERAGCCGYIPANHVGKHSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 44.0 bits (104), Expect = 1e-07
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
++V + +D+ + I++ E+L+L+ +K WW+V ++ + YVP++YVE
Sbjct: 30 EEVIVIAKWDYTAQQDQE--LDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 84
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 46.0 bits (108), Expect = 2e-07
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
+ F + + ++GE+L ++ KTN+DWW+ + G VPA+YV++
Sbjct: 151 VGTFKFTGERETD--LPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 203
Score = 41.0 bits (95), Expect = 1e-05
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
KV +D + D +R+++G+ + + +K + ++ G+ VP +Y+
Sbjct: 251 KVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYK-AELDGQIGSVPHTYLRF 303
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 43.7 bits (103), Expect = 2e-07
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 26 IQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+++G+ L L+ TNKDWW+V + + +VPA+YV+
Sbjct: 10 MKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLD 47
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 43.5 bits (103), Expect = 2e-07
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
+ + +KD + ++G + +I+K + WW + R GK + PASY++ K
Sbjct: 12 VTVQPYTSQSKDE--IGFEKGVTVEVIRKNLEGWWYI-RYLGKEGWAPASYLKKAKD 65
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 45.2 bits (106), Expect = 3e-07
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 10 VLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
V+ F ++ + + ++GE+L ++ KTN+DWW+ + G VPA+YV++
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 43.2 bits (102), Expect = 3e-07
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+ + G ++ +++K WW V R + P+ Y+ + +
Sbjct: 12 MTCSAYQKVQDSE--ISFPAGVEVQVLEKQESGWWYV-RFGELEGWAPSHYLVLDE 64
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 42.5 bits (101), Expect = 3e-07
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQV-IRSSGKPFYVPASYVEV 62
V YDF ++D + I+ G+K++++ +KDWW + SGK VPA ++E
Sbjct: 6 IVQYDFMAESQDE--LTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 43.2 bits (102), Expect = 3e-07
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYV 60
L L VL D+ + GEKL +I WW+ I S+G+ Y+P V
Sbjct: 14 GLDSDFLAVLSDYPSPDISP--PIFRRGEKLRVISDEG-GWWKAISLSTGRESYIPGICV 70
Query: 61 EVYKKLSNG 69
S+G
Sbjct: 71 ARVSGPSSG 79
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 42.7 bits (101), Expect = 4e-07
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
YDF + +++ + L ++ ++ WW+V +G+ YVP + + Y
Sbjct: 12 LCNYDFQARNSSE--LSVKQRDVLEVLDD-SRKWWKVRDPAGQEGYVPYNILTPYP 64
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 43.2 bits (102), Expect = 4e-07
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEVYKKL 66
+ LY F T++ + ++GE + +I+K D WW+ + G+ VP +YV V
Sbjct: 21 QTLYPFSSVTEEE--LNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 78
Query: 67 S 67
Sbjct: 79 P 79
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 42.6 bits (101), Expect = 4e-07
Identities = 12/58 (20%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYKK 65
++F+ T+ + ++GE++ L+++ +++W++ I + + P +YV+V K+
Sbjct: 10 IAKFNFNGDTQVE--MSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 42.8 bits (101), Expect = 4e-07
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-----NKDWWQVIRSSGKPFYVPASYVEVY 63
+ LYDF + + V +++G+ + ++ K + DWW+V +G Y+P +Y+E+
Sbjct: 18 RALYDFVPENPEME-VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 64 KK 65
K+
Sbjct: 77 KR 78
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 42.2 bits (100), Expect = 6e-07
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQV-IRSSGKPFYVPASYVEVYKKL 66
V YDF ++D + I+ G+K++++ +KDWW + SGK VPA ++E +
Sbjct: 10 IVQYDFMAESQDE--LTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK 67
Query: 67 S 67
Sbjct: 68 K 68
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 41.9 bits (99), Expect = 6e-07
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-------IRSSGKPFYVPASYVE 61
LYD+ + V +++G+ L L+ TNKDWW+V ++ + +VPA+YV+
Sbjct: 5 LALYDYQEKSPRE--VTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 42.0 bits (99), Expect = 7e-07
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+V DF S D +++++G+ + +I K W + K YV+V
Sbjct: 13 RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMG-LLNNKVGTFKFIYVDV 65
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 44.3 bits (104), Expect = 8e-07
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPA 57
+ L + D+ V + +G++ L+ W+V+ SSG VP+
Sbjct: 197 GRLPLLAVCDYK-----QVEVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPS 245
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 41.6 bits (98), Expect = 9e-07
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 26 IQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+++G+ L L+ TNKDWW+V + + +VPA+YV+
Sbjct: 8 MKKGDILTLLNSTNKDWWKV-EVNDRQGFVPAAYVKKLD 45
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 42.0 bits (99), Expect = 1e-06
Identities = 14/60 (23%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVE 61
++D+ + LYD+ + D + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 1 MEDIIVVALYDYVSWSPDD--LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVA 57
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 44.2 bits (103), Expect = 1e-06
Identities = 17/84 (20%), Positives = 35/84 (41%)
Query: 12 YDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNR 71
+D+ D + + ++GE L +I+K + WW G+ +P YVE + S +
Sbjct: 130 TLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGK 189
Query: 72 NNVENINPTMEKTRSYSEGNDKAM 95
+ N N +++ +
Sbjct: 190 HGNRNSNSYGIPEPAHAYAQPQTT 213
Score = 33.4 bits (75), Expect = 0.006
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K + D + ++ G+ + + + W+ +G+ P ++V++
Sbjct: 241 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEG-EVNGRKGLFPFTHVKI 293
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 41.5 bits (98), Expect = 1e-06
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEVYKKL 66
+ LY F T++ + ++GE + +I+K D WW+ + G+ VP +YV V
Sbjct: 10 QTLYPFSSVTEEE--LNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 67
Query: 67 SNGN 70
+
Sbjct: 68 PALH 71
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 41.1 bits (97), Expect = 1e-06
Identities = 13/60 (21%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 3 LQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVE 61
LQD + L+ ++ S + ++GE+L +++++ +WW+ ++G+ ++P ++V
Sbjct: 4 LQDNLVIALHSYEPSHDGD--LGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVA 60
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 44.0 bits (104), Expect = 1e-06
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
LYDF S + + I +GEKL ++ + W ++ +VP++Y+
Sbjct: 49 LYDFVASGDNT--LSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 96
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 41.0 bits (97), Expect = 1e-06
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+VL+ F TK+ +++ G +F++KK N +W V+ +G+ VP +Y+E S+
Sbjct: 11 RVLFGFVPETKEE--LQVMPGNIVFVLKKGNDNWATVMF-NGQKGLVPCNYLEPVSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 40.8 bits (96), Expect = 2e-06
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPF----YVPASYVEVYK 64
L+DF T + + + G+ + +K + WW + YVP +Y+ +
Sbjct: 16 LWDFKSRTDEE--LSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 40.8 bits (96), Expect = 2e-06
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-----NKDWWQVIRSSGKPFYVPASYVEV 62
+ LYDF + + V +++G+ + ++ K + DWW+V +G Y+P +Y+E+
Sbjct: 11 RALYDFVPENPEME-VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 40.3 bits (95), Expect = 2e-06
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEV 62
YD+D + + + E +K+ I+ + DWW + G P++YV +
Sbjct: 2 WATAEYDYDAAEDNE--LTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 41.0 bits (96), Expect = 3e-06
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-----NKDWWQVIRSSGKPFYVPASYVEVY 63
+ LYDF + + V +++G+ + ++ K + DWW+V +G Y+P +Y+E+
Sbjct: 18 RALYDFVPENPEME-VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 64 KKLSN 68
K+
Sbjct: 77 KRRKK 81
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 40.8 bits (96), Expect = 3e-06
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 1 MELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASY 59
M + LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P+ Y
Sbjct: 1 MVQISTLFEALYDYEARTEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIY 58
Query: 60 VEVYKKLS 67
+ +L
Sbjct: 59 LAPVDRLD 66
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 40.4 bits (95), Expect = 3e-06
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
LYDF+ D + +R+ EG+ +F+ K + W S K VP +V +
Sbjct: 9 VALYDFE-PENDNE-LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 39.9 bits (94), Expect = 3e-06
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+D+ + + ++G L L + ++DWW+ R +G VP Y+ V
Sbjct: 10 IAKFDYVGRSARE--LSFKKGASLLLYHRASEDWWEG-RHNGIDGLVPHQYIVV 60
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 42.6 bits (99), Expect = 3e-06
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNN 73
FD++ D + + ++G+ L + K + WW S GK +P YVE Y+ S
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSAL 200
Query: 74 VENINPTMEKTRSYSE 89
+
Sbjct: 201 IGGNQEGSHPQPLGGP 216
Score = 36.9 bits (84), Expect = 4e-04
Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 1 MELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
++ + +V+ + D + ++ GE + + K W+ +GK + P ++V
Sbjct: 233 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEG-ECNGKRGHFPFTHV 291
Query: 61 EV 62
+
Sbjct: 292 RL 293
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 40.4 bits (95), Expect = 4e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKK----TNKDWWQVIRSSGKPFYVPASYVE 61
+Y F + + + +KL +++ N +WW +GK YVP++Y+
Sbjct: 17 FAVYTFKARNPNE--LSVSANQKLKILEFKDVTGNTEWWLA-EVNGKKGYVPSNYIR 70
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 40.5 bits (95), Expect = 4e-06
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPF--------YVPASYVEV 62
L+D+ T + + + G+KL ++ +++ WW K Y+P++YV
Sbjct: 13 LFDYQARTAED--LSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
Query: 63 YKKLSNG 69
S+G
Sbjct: 71 DSGPSSG 77
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 40.0 bits (94), Expect = 4e-06
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+D+ T + ++G L L ++ + DWW+ R +G +P Y+ V
Sbjct: 13 IAKFDYVGRTARE--LSFKKGASLLLYQRASDDWWEG-RHNGIDGLIPHQYIVVQD 65
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 42.3 bits (100), Expect = 4e-06
Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYV 60
Y+F + + + +G+ L ++ T +W++ G+ +PA+YV
Sbjct: 8 WPSGTECIAKYNFHGTAEQD--LPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYV 65
Query: 61 EVYKKLSNGNRNNVEN 76
+ + + G + ++
Sbjct: 66 QKREGVKAGTKLSLMP 81
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 40.0 bits (94), Expect = 4e-06
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K + D + ++ G+ + + + W+ +G+ P ++V++
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEG-EVNGRKGLFPFTHVKI 57
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 40.5 bits (95), Expect = 5e-06
Identities = 7/65 (10%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
K + D + ++ G+ + + + W+ +G+ P ++V+++ +
Sbjct: 20 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEG-EVNGRKGLFPFTHVKIFDPQNP 78
Query: 69 GNRNN 73
+
Sbjct: 79 DENES 83
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 39.9 bits (94), Expect = 5e-06
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ LYD+ D + + G+ L +I + WW V +G+ +VP SY+E S+
Sbjct: 12 RALYDYTAQNPDE--LDLSAGDILEVILEGEDGWWTV-ERNGQRGFVPGSYLEKLSGPSS 68
Query: 69 G 69
G
Sbjct: 69 G 69
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 40.1 bits (94), Expect = 5e-06
Identities = 14/64 (21%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 4 QDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEV 62
+D+ + LYD++ + + Q+G+++ +++++ +WW+ ++ K Y+P++YV
Sbjct: 24 EDIIVVALYDYEAIHHED--LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVAR 80
Query: 63 YKKL 66
L
Sbjct: 81 VDSL 84
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 39.1 bits (92), Expect = 7e-06
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
LYDF+ D + +R+ EG+ +F+ K + W S K VP +V +
Sbjct: 5 VALYDFE-PENDNE-LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 41.4 bits (96), Expect = 8e-06
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
FD++ D + + ++G+ L + K + WW S GK +P YVE Y+ S
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 197
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 39.7 bits (93), Expect = 8e-06
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQV-IRSSGKPFYVPASYVEVYKKLSN 68
+ + ++G+ + +++ NK W++V +SG+ + A + S+
Sbjct: 23 KCEHTRPKPGE--LAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPSS 80
Query: 69 G 69
G
Sbjct: 81 G 81
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 39.2 bits (92), Expect = 8e-06
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKT-NKDWWQVIRSSGKPFYVPASYVEVYKKL 66
Y+F T + + +G+ L ++ T + +W++ G+ +PA+YV+ + +
Sbjct: 17 KYNFH-GTAEQD-LPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 71
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 38.7 bits (91), Expect = 1e-05
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYKKLS 67
L+ + + + +Q+GE + ++ K W + + +G+ P+ YV S
Sbjct: 11 VALHTYSAHRPEE--LDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS 68
Query: 68 NG 69
+G
Sbjct: 69 SG 70
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 39.8 bits (93), Expect = 1e-05
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVYKKL 66
LYD++ T + + ++GE+ +I T DWW+ ++GK Y+P++YV +
Sbjct: 31 VALYDYEARTTED--LSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI 87
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 38.9 bits (91), Expect = 1e-05
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVYKKL 66
LYD++ + + +GEK +++ DWW+ ++G+ Y+P++YV +
Sbjct: 12 LYDYNATRWTD--LSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 40.8 bits (95), Expect = 1e-05
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ + L+ L D+ + +G++ L + W V G VP+ +
Sbjct: 280 SNKPIILRALCDYK-----QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLI 334
Query: 62 V 62
+
Sbjct: 335 I 335
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 38.4 bits (90), Expect = 2e-05
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
LY F + + ++ G+ + L++ +N+DWW+ + + + PA++V+ S+
Sbjct: 11 VALYKFVPQENED--LEMRPGDIITLLEDSNEDWWKG-KIQDRIGFFPANFVQRLSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 38.5 bits (90), Expect = 2e-05
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
T+ LYD+ + D + I G+ + + K N+DWW G+ Y PA++V
Sbjct: 8 TVVALYDYTANRSDE--LTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 40.5 bits (95), Expect = 2e-05
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 6 VTLKV-LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVY 63
VT V LYD++ T+ + ++GE+L ++ T DWW S+G+ Y+P++YV
Sbjct: 2 VTTFVALYDYESRTETD--LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS 59
Query: 64 KKLS 67
+
Sbjct: 60 DSIQ 63
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 38.4 bits (90), Expect = 2e-05
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVE 61
LYD++ T+D + +GEK ++ + DWW+ ++G+ Y+P++YV
Sbjct: 21 LYDYEAITEDD--LSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 38.0 bits (89), Expect = 2e-05
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRS-SGKPFYVPASYV 60
E Q + LY +D D + ++GEK+ ++++ +WW+ + K ++P++YV
Sbjct: 4 EEQGDIVVALYPYDGIHPDD--LSFKKGEKMKVLEEHG-EWWKAKSLLTKKEGFIPSNYV 60
Query: 61 E 61
Sbjct: 61 A 61
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 38.1 bits (89), Expect = 3e-05
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+ + T + + G+ L L ++ + DWW+ +G +P Y+ +
Sbjct: 14 VACFAYTGRTAQE--LSFRRGDVLRLHERASSDWWRG-EHNGMRGLIPHKYITL 64
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 38.0 bits (89), Expect = 3e-05
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLS 67
+ L+DF ++K + + G+ +FL+ + NKDW + G P S+V++ K
Sbjct: 22 EALFDFTGNSKLE--LNFKAGDVIFLLSRINKDWLEG-TVRGATGIFPLSFVKILKDFP 77
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 40.0 bits (92), Expect = 3e-05
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNN 73
FD++ + + G+ +FL+ + NKDW + G P S+V++ K
Sbjct: 181 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEG-TVRGATGIFPLSFVKILKDFP------ 233
Query: 74 VENINPTMEKTRSYSEGNDKAMKQL 98
E +PT Y E +K +
Sbjct: 234 -EEDDPTNWLRCYYYEDTISTIKDI 257
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 37.7 bits (88), Expect = 3e-05
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+V+ + D + ++ GE + + K W+ +GK + P ++V +
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEG-ECNGKRGHFPFTHVRL 62
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 37.7 bits (88), Expect = 3e-05
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVEVYKKLS 67
+ + + D + +G+ + + W V + + + VE S
Sbjct: 11 RAILPYT-KVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSGPS 69
Query: 68 NG 69
+G
Sbjct: 70 SG 71
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 37.6 bits (88), Expect = 3e-05
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYKKLS 67
+ +Y + +D + ++EG+++ ++++ + W+ V R + K P +YV S
Sbjct: 11 RAMYQYRPQNEDE--LELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGPS 68
Query: 68 NG 69
+G
Sbjct: 69 SG 70
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 37.6 bits (88), Expect = 3e-05
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ LY F+ T D + +EG+ +++ ++ +WW+ S G+ +P++YV S+
Sbjct: 11 RALYTFEPRTPDE--LYFEEGDIIYITDMSDTNWWKG-TSKGRTGLIPSNYVAEQSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 37.9 bits (88), Expect = 5e-05
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 9 KVLYDFDYSTKDGKYVR------IQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
L+D+D T +EG+ + + + D + + + +P + V
Sbjct: 21 VALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVS 79
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 37.7 bits (88), Expect = 5e-05
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+ L D++ + + + + + + K ++ W + + +GK P +VE+
Sbjct: 14 RALKDYN-VSDTSL-LPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILL 67
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 37.2 bits (87), Expect = 5e-05
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
K L ++ ++ +G+ + L ++ +++W+Q +G PAS VEV S+
Sbjct: 11 KALCNYRGKNPGD--LKFNKGDVILLRRQLDENWYQG-EINGVSGIFPASSVEVISGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 37.8 bits (88), Expect = 5e-05
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+YD+ + +D + +G+ + ++ K + DWWQ +G P++YV++ S
Sbjct: 38 IAMYDYAANNEDE--LSFSKGQLINVMNKDDPDWWQG-EINGVTGLFPSNYVKMTTDSSG 94
Query: 69 GN 70
+
Sbjct: 95 PS 96
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 37.0 bits (86), Expect = 8e-05
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+ ++D T + + + G+ + ++ +NKDWW + + + PAS+V ++
Sbjct: 14 EAVWDHV--TMANRELAFKAGDVIKVLDASNKDWWWG-QIDDEEGWFPASFVRLWV 66
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 36.5 bits (85), Expect = 9e-05
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
T+K LYD+ D + G + + K WW+ + Y P++YVE
Sbjct: 8 RTVKALYDYKAKRSDE--LTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65
Query: 66 LSNG 69
S+G
Sbjct: 66 PSSG 69
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 36.6 bits (85), Expect = 1e-04
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+YD+ K+ + + QEG +++IKK + W++ +G P +YVE S+
Sbjct: 21 VAIYDYT-KDKEDE-LSFQEGAIIYVIKKNDDGWYEG-VMNGVTGLFPGNYVESISGPSS 77
Query: 69 G 69
G
Sbjct: 78 G 78
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 35.9 bits (83), Expect = 1e-04
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV-IRSSGKPFYVPASYVE 61
+ + + D + +G+ + + W V + + + VE
Sbjct: 9 RAILPYT-KVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 36.4 bits (84), Expect = 2e-04
Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 9 KVLYDFDYSTKDGKY----VRIQEGEKLFLIKKTNKD-WWQVIRSSGKPFYVPASYVE 61
Y ++ + + + G+ L++ ++D +++ G+ VP+++V+
Sbjct: 21 VARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 35.7 bits (83), Expect = 2e-04
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K LYDF+ DG+ + +EG+ + L + +++W++ G+ + P SYV+V
Sbjct: 17 KALYDFE-PENDGE-LGFREGDLITLTNQIDENWYEG-MLHGQSGFFPLSYVQV 67
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 36.6 bits (84), Expect = 2e-04
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWW--QVIRSSGKPFYVPASYVEV 62
+Y+F S + +Q G+ + + + DW+ +I+ P S++ +
Sbjct: 63 VAIYNFQGSGAPQ--LSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHI 115
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 35.7 bits (83), Expect = 2e-04
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ +DF T + +Q+G+ +++ K+ +++W++ G+ P +Y+E+ S+
Sbjct: 11 RAKFDFKAQTLKE--LPLQKGDIVYIYKQIDQNWYEG-EHHGRVGIFPRTYIELLSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural
genomics/proteomics initiative RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 92
Score = 36.1 bits (83), Expect = 2e-04
Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 12 YDFDYSTKDGKYVRIQEGEKLFLIKKT----NKDWWQVIRSSGKPFYVPASYVEVY 63
+ +++ V + EG+ + +IKK +++ W + + +V +S+++ Y
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLI-DNGVTKGFVYSSFLKPY 76
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 35.2 bits (82), Expect = 2e-04
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+ L+DF ++K + + G+ +FL+ + NKDW + G P S+V++ K
Sbjct: 8 EALFDFTGNSKLE--LNFKAGDVIFLLSRINKDWLEG-TVRGATGIFPLSFVKILK 60
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 35.3 bits (82), Expect = 2e-04
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ LYDF+ + + +EG+ + L + +++W++ G+ + P +YVEV L +
Sbjct: 7 RGLYDFEPENQGE--LGFKEGDIITLTNQIDENWYEG-MIHGESGFFPINYVEVIVPLEH 63
Query: 69 GNRNN 73
+ ++
Sbjct: 64 HHHHH 68
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 35.3 bits (82), Expect = 2e-04
Identities = 10/55 (18%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEV 62
+ +YD+ + + + V ++G+ + ++ + W ++ +G+ +PA+Y+E
Sbjct: 10 RAMYDYS-AQDEDE-VSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 35.8 bits (83), Expect = 2e-04
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEV 62
+VLYD+D + + + E + + D W + VP +Y+E+
Sbjct: 21 RVLYDYD--AANSTELSLLADEVITVFSVVGMDSDWLMG-ERGNQKGKVPITYLEL 73
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 36.6 bits (85), Expect = 5e-04
Identities = 13/57 (22%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVYKKL 66
LYD++ + + Q+G+++ +++++ +WW+ ++ K Y+P++YV L
Sbjct: 14 LYDYEAIHHED--LSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDSL 67
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.1 bits (79), Expect = 6e-04
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
++ +DF + + +Q+G+ +++ K+ +K+W + G+ PA+YVEV
Sbjct: 5 RLKFDFQAQSPKE--LTLQKGDIVYIHKEVDKNWLEG-EHHGRLGIFPANYVEV 55
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 34.7 bits (80), Expect = 7e-04
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYV---PASYVEV 62
+V + S + + + G+ + ++KK WWQ +++ GK PAS+V++
Sbjct: 11 QVTSAYVASGSE--QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 36.0 bits (83), Expect = 7e-04
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 11 LYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIR-SSGKPFYVPASYVEVYKKLS 67
LYD++ T+ + ++GE+L ++ T DWW S+G+ Y+P++YV +
Sbjct: 91 LYDYESRTETD--LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 146
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 34.5 bits (79), Expect = 7e-04
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-----VIRSSGKPFYVPASYVEV 62
+ L DF + D + ++ G+ + ++++ W+ R + + Y P VEV
Sbjct: 22 RALKDFW-NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 34.2 bits (79), Expect = 7e-04
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+ LYDF+ + + +EG+ + L + +++W++ G + P +YVE+ L +
Sbjct: 11 RALYDFEPENEGE--LGFKEGDIITLTNQIDENWYEG-MLHGHSGFFPINYVEILVALPH 67
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 33.7 bits (78), Expect = 8e-04
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ LY FD + ++ G+K+ L++K + +W++ +G+ PA+YV+
Sbjct: 6 EALYQFDPQQDGD--LGLKPGDKVQLLEKLSPEWYKG-SCNGRTGIFPANYVK 55
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 33.7 bits (78), Expect = 8e-04
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+T LYD+ + D + + + + I+ + WW+ G+ PA+YVE+ +
Sbjct: 10 ITAIALYDYQ-AAGDDE-ISFDPDDIITNIEMIDDGWWRG-VCKGRYGLFPANYVELRQ 65
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 33.7 bits (78), Expect = 0.001
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+ +K LYD+D T D + +EG+ + + +K WW+ +GK +VPA+YV+
Sbjct: 4 IQVKALYDYDAQTGDE--LTFKEGDTIIVHQKDPAGWWEG-ELNGKRGWVPANYVQD 57
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
++ +Y ++ D + I G+ + +I+ + W G P SY +
Sbjct: 2 AMEAIYAYEAQGDDE--ISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 33.7 bits (78), Expect = 0.001
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD-WWQVIRSSGKPFYVPASYVEV 62
V ++ LYD+D + + + + G++L + + ++ W + SG+ PA+YVE
Sbjct: 4 VRVRALYDYD-GQEQDE-LSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 33.5 bits (77), Expect = 0.001
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV 45
+ LYD+ + V +++G+ L L+ TNKDWW+V
Sbjct: 23 LVLALYDYQEKSPRE--VTMKKGDILTLLNSTNKDWWKV 59
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSN 68
+V + + D + ++ G+ + ++ + + WW+ +GK P+++++ S+
Sbjct: 11 QVAFSYLPQNDDE--LELKVGDIIEVVGEVEEGWWEG-VLNGKTGMFPSNFIKELSGPSS 67
Query: 69 G 69
G
Sbjct: 68 G 68
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 33.3 bits (77), Expect = 0.001
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ LY F+ T D + +EG+ +++ ++ +WW+ S G+ +P++YV
Sbjct: 7 RALYTFEPRTPDE--LYFEEGDIIYITDMSDTNWWKG-TSKGRTGLIPSNYVA 56
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 35.4 bits (81), Expect = 0.001
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
+ YDF +T D + + + G+ L ++ + W +GK ++P +Y+E+
Sbjct: 1 MEAIAKYDFK-ATADDE-LSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 58
Score = 34.3 bits (78), Expect = 0.003
Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 12 YDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
FD+ ++ + + G+ + ++ ++ +WW+ G+ P +YV +
Sbjct: 163 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG-ACHGQTGMFPRNYVTPVNR 215
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.9 bits (78), Expect = 0.001
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+T LYD+ + D + + + + I+ + WW+ G+ PA+YVE+
Sbjct: 18 ITAVALYDYQ-AAGDDE-ISFDPDDIITNIEMIDDGWWRG-VCKGRYGLFPANYVEL 71
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 33.3 bits (77), Expect = 0.001
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
V V +D+ D + I GE + I+K + WW+ + +G+ P ++V KK
Sbjct: 2 VEAIVEFDYQAQHDDE--LTISVGEIITNIRKEDGGWWEG-QINGRRGLFPDNFVREIKK 58
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 33.1 bits (76), Expect = 0.002
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKL-FLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
K ++ + + +G+ + LI + W S + P+SY ++ +
Sbjct: 10 KTIFPHTAGSNKTL-LSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 32.9 bits (76), Expect = 0.002
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ L+ ++ + + + QEG+ + ++ K N++W + S GK P +VE
Sbjct: 9 EALFSYEATQPED--LEFQEGDIILVLSKVNEEWLEG-ESKGKVGIFPKVFVE 58
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
V +++ +D + + +G K+ +++K + WW+ +G+ + P++YV
Sbjct: 21 YVKFNYMAEREDE--LSLIKGTKVIVMEKCSDGWWR-GSYNGQVGWFPSNYVT 70
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 33.1 bits (76), Expect = 0.002
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQV--IRSSGKPFYVPASYVEV 62
K ++ + +EG+ + L+ +D W + + P SY V
Sbjct: 11 KAIFSHAAGDNSTL-LSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 33.2 bits (76), Expect = 0.002
Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+ LYDF+ + +D + + + GE + ++ ++ +WW+ + P+++V
Sbjct: 21 RALYDFE-AVEDNE-LTFKHGEIIIVLDDSDANWWKG-ENHRGIGLFPSNFVTT 71
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 33.1 bits (76), Expect = 0.002
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD-WWQ-VIRSSGKPFYVPASYVEVYKKL 66
K ++ + + + +G+ L L+ KD W ++ + P+SY ++
Sbjct: 11 KTIFPHT-AGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP 69
Query: 67 SNG 69
S+G
Sbjct: 70 SSG 72
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 32.5 bits (75), Expect = 0.002
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
V V YD+D + D + + I+ GE + +KK ++ W +G+ P ++V+ K
Sbjct: 2 VDYIVEYDYD-AVHDDE-LTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK 58
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.1 bits (76), Expect = 0.003
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K LY F D + +++G+ + + +K + WW +GK + PA+YVE
Sbjct: 11 KALYSFQARQDD--ELNLEKGDIVIIHEKKEEGWWFG-SLNGKKGHFPAAYVEE 61
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 32.6 bits (75), Expect = 0.003
Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
KVL+++ +D + ++ G+ + + ++ + WW + K P+++V+
Sbjct: 11 KVLFEYIPQNEDE--LELKVGDIIDINEEVEEGWWSG-TLNNKLGLFPSNFVKE 61
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 32.1 bits (74), Expect = 0.004
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
+ LYDF+ +D + + GE + ++ +N WW R K PA+YV +
Sbjct: 5 RALYDFEALEEDE--LGFRSGEVVEVLDSSNPSWWTG-RLHNKLGLFPANYVAPMMR 58
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 32.2 bits (74), Expect = 0.004
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+K L+D+ + ++ + + + + ++K + WW+ K + P++YVE
Sbjct: 5 AVKALFDYK-AQREDE-LTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 32.8 bits (75), Expect = 0.004
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN----KDWWQVIRSSGKPFYVPASYVEVYK 64
+ YDF + + + + G+ L L K + W +PA+YV++
Sbjct: 21 RAEYDFVAVSDEE--ISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 78
Query: 65 KLSNGNRNN 73
K
Sbjct: 79 KRRGRKTIE 87
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 31.7 bits (73), Expect = 0.005
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVY 63
+ L+DF+ + + G+ + LI K + +WW+ + + + P++YV Y
Sbjct: 6 QALFDFNPQESGE--LAFKRGDVITLINKDDPNWWEG-QLNNRRGIFPSNYVCPY 57
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 31.9 bits (73), Expect = 0.005
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
+K L+D+ +D + + + ++K WW+ K + P++YVE
Sbjct: 7 CAVKALFDYKAQREDE--LTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 31.8 bits (73), Expect = 0.005
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K LY +D + + + + + +IK+ WW R GK P +YV
Sbjct: 9 KALYAYD-AQDTDE-LSFNANDIIDIIKEDPSGWWTG-RLRGKQGLFPNNYVTK 59
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 31.4 bits (72), Expect = 0.007
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+ L+DFD +DG+ + + G+ + ++ ++ +WW+ G+ P +YV
Sbjct: 6 QALFDFD-PQEDGE-LGFRRGDFIHVMDNSDPNWWKG-ACHGQTGMFPRNYVTA 56
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 31.7 bits (72), Expect = 0.009
Identities = 8/54 (14%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
+V + + D + ++ G+ + ++ + + WW+ +GK P+++++
Sbjct: 22 QVAFSYLPQNDDE--LELKVGDIIEVVGEVEEGWWEG-VLNGKTGMFPSNFIKE 72
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 31.2 bits (71), Expect = 0.010
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 7 TLKVLYDFDYSTKDGKYVR-----IQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ D+D ++ G+ + + + + G VPA ++
Sbjct: 9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 31.5 bits (72), Expect = 0.010
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K L DF+ D + + ++ + + +I + ++ W +G + PA +VEV
Sbjct: 11 KALLDFE-RHDDDE-LGFRKNDIITIISQKDEHCWVG-ELNGLRGWFPAKFVEV 61
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 31.3 bits (71), Expect = 0.013
Identities = 9/58 (15%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKT-----NKDWWQVIRSSGKPFYVPASYVE 61
++D++ + + + ++ G+++ ++ + ++ WW SG+ P++YV
Sbjct: 33 TAVFDYEAAGDEE--LTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 32.4 bits (72), Expect = 0.015
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVEV 62
+DY ++ + + G++L ++ + + W + +G+ PA+YVE
Sbjct: 435 YDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA 484
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 30.6 bits (70), Expect = 0.016
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ LYDF+ + + + GE + ++ ++ +WWQ + P+++V
Sbjct: 9 RALYDFEAVEDNE--LTFKHGELITVLDDSDANWWQG-ENHRGTGLFPSNFVT 58
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 30.7 bits (70), Expect = 0.016
Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
KVL+++ +D + ++ G+ + + ++ + WW + K P+++V+
Sbjct: 5 KVLFEYIPQNEDE--LELKVGDIIDINEEVEEGWWSG-TLNNKLGLFPSNFVKE 55
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 30.3 bits (69), Expect = 0.017
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEV 62
+ ++F + +D + +G+ + + + WW+ G+ + P++YV
Sbjct: 10 RAKFNFQQTNEDE--LSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVRE 60
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 30.7 bits (70), Expect = 0.020
Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEV 62
K ++F + +D + + +G+ +++ + WW+ +G+ + P++YV
Sbjct: 14 KARFNFKQTNEDE--LSVCKGDIIYVTRVEEGGWWEG-TLNGRTGWFPSNYVRE 64
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 30.4 bits (69), Expect = 0.023
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-----VIRSSGKPFYVPASYVEVY 63
K +YD + D + + EGE + + + +++WW G P S+V +
Sbjct: 14 KTIYDCQ-ADNDDE-LTFIEGEVIIVTGEEDQEWWIGHIEGQPERKG---VFPVSFVHIL 68
Query: 64 K 64
Sbjct: 69 S 69
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 29.9 bits (68), Expect = 0.025
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEV 62
+ ++F + +D + +G+ + + + WW+ G+ + P++YV
Sbjct: 8 RAKFNFQQTNEDE--LSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVRE 58
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 30.0 bits (68), Expect = 0.028
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ--VIRSSGKPF--YVPASYVEV 62
+ + S + + ++ +++ + + +W+ S+G P S+V V
Sbjct: 11 VAQFPYK-SDYEDD-LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV 66
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 29.6 bits (67), Expect = 0.039
Identities = 9/53 (16%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ +YDF+ + + + + GE + ++ ++ +WW+ + P+++V
Sbjct: 21 RAIYDFEAAEDNE--LTFKAGEIITVLDDSDPNWWKG-ETHQGIGLFPSNFVT 70
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 30.8 bits (69), Expect = 0.041
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 1 MELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
LQD + L+ ++ S + ++GE+L +++++ + W ++G+ ++P ++V
Sbjct: 8 SPLQDNLVIALHSYEPSHDGD--LGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 65
Query: 61 EVYKKLSN 68
L
Sbjct: 66 AKANSLEP 73
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 29.6 bits (66), Expect = 0.059
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 19 KDGKYVRIQEGEKLFLIKK-TNKDWWQ-VIRSSGKPFYVPASYVEVYK 64
G ++R+ G+ + L K +WW+ ++ + + P + V Y
Sbjct: 30 AFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 77
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 29.2 bits (66), Expect = 0.060
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 2 ELQDVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYV 60
E + T + ++ F +D + ++ + L + + W++ +G PA Y
Sbjct: 3 EEHEQTHRAIFRFVPRHEDE--LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
Query: 61 E 61
Sbjct: 61 I 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.064
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 22/48 (45%)
Query: 35 IKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNNVENINPTME 82
+KK +++S K Y S L+ I TME
Sbjct: 22 LKK--------LQASLKL-YADDSA----PALA---------IKATME 47
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 28.6 bits (64), Expect = 0.079
Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVE 61
+ V + + +D + + G ++ +++ + WW+ +G+ + P++YV
Sbjct: 2 IPAFVXFAYVAEREDE--LSLVXGSRVTVMEXCSDGWWRG-SYNGQIGWFPSNYVL 54
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 29.3 bits (65), Expect = 0.086
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 9 KVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKD--WWQVIRSSGKPFYVPASYVEV 62
K D + ++GE++ +I+ T+ W + G Y+ + VE+
Sbjct: 32 KACCDV---KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI 84
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 28.0 bits (63), Expect = 0.16
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 6 VTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTN-KDWWQVIRSSGKPFYVPASYVEVYK 64
K LY + G + + W + +GK +P +YVE
Sbjct: 11 RKAKALYACKAEHDS--ELSFTAGTVFDNVHPSQEPGWLEG-TLNGKTGLIPENYVEFLS 67
Query: 65 KLSNG 69
S+G
Sbjct: 68 GPSSG 72
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A
1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 29.0 bits (64), Expect = 0.21
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 7 TLKVLYDFDYSTKD-----GKYVRIQEGEKLFLIKKTNKDWWQ--VIRSSGKPFYVP 56
++ + + +D G + + + L + +K N DWW +++ + ++P
Sbjct: 40 AVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIP 96
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 27.5 bits (62), Expect = 0.21
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQ-VIRSSGKPFYVPASYVEVYKK 65
T + ++ F +D + ++ + L + + W++ +G PA Y K
Sbjct: 5 THRAIFRFVPRHED--ELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 27.8 bits (62), Expect = 0.59
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 8 LKVLYDFDYSTKDG---KYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYK 64
++ L+D+D + DG + + + G+ L + ++ +WWQ R G V K
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPS-K 66
Query: 65 KLSNGNRNNVENINPTMEKTRSYSE 89
+ + + E SY
Sbjct: 67 RRWERKMRARDRSVKSEENVLSYEA 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.62
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 19/59 (32%)
Query: 3 LQDVTLKVLYD-------FD--------YSTKDGKYVRIQEG---EKLF-LIKKTNKDW 42
L + + D F+ Y T DG +R+ G E++ I + W
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 26.6 bits (58), Expect = 1.5
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 14/41 (34%)
Query: 34 LIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNNV 74
+ KTN ++PA V L NG +N V
Sbjct: 352 YVNKTNS-------------HLPAGKQ-VEISLVNGAKNLV 378
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 74
Score = 26.7 bits (58), Expect = 0.67
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 5 DVTLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPF-----YVPASY 59
+ DY + + +GE + ++ ++ V + + +VP S
Sbjct: 5 SSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSI 64
Query: 60 VEVYKKLSNG 69
+ + S+G
Sbjct: 65 LAPFSGPSSG 74
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606,
structural genomics, PSI-2, protein structure
initiative; NMR {Clostridium perfringens}
Length = 74
Score = 26.5 bits (59), Expect = 0.73
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 17 STKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNNV 74
+ G ++ +K+ +IK+ + W++ IR +GK Y SY+ + + S + ++
Sbjct: 18 GSNYGVIGTLRNNDKVEIIKEVD-GWYE-IRFNGKVGYASKSYITIVNEGSLEHHHHH 73
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling
protein; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 102
Score = 25.4 bits (55), Expect = 2.2
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYV 60
+ KV + ++++ GE L +I+ T+ GK YV SY+
Sbjct: 41 STKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL 94
>2oq3_A Mannitol-specific cryptic phosphotransferase enzyme IIA
component; solution structure; NMR {Escherichia coli}
Length = 150
Score = 25.3 bits (56), Expect = 3.2
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 21 GKYVRIQE--GEKLFLIKKTNKDWWQVIRSSGKPF----YVPASYVE 61
G ++R+ + E + + KDW + I S Y+ +Y++
Sbjct: 1 GSHMRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ 47
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 25.8 bits (56), Expect = 3.3
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 7 TLKVLYDFDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYV 55
L + Y +G + + + K++ K + R+ F
Sbjct: 394 LLNCSFKCSYVVTNGLGINVFKDPVADPNKRSKKGRLSLHRTPAGNFVT 442
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3
domain, structural genomics, protein structure
initiative; NMR {Bacillus thuringiensis
serovarkonkukian}
Length = 70
Score = 24.1 bits (53), Expect = 3.9
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 17 STKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKK 65
T + +G+K+ +I + + W + I +G+ Y+ Y+ +
Sbjct: 19 GTNYRIIGALPQGQKVQVISENS-GWSK-INYNGQTGYIGTRYLSKLEH 65
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA
racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA
racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis}
PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Length = 360
Score = 25.2 bits (56), Expect = 4.2
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 12 YDFDYSTKDGKYVRIQEGE 30
YD Y DG+YV + E
Sbjct: 224 YDT-YECADGRYVAVGAIE 241
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 25.0 bits (54), Expect = 5.2
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 27 QEGEKLFLIKKTNKDWW-QVIRSSGKPFYVPASYVEVYKKLSNGNRNNVENI 77
+G + L ++ +D +V+++ +P E+ G VE +
Sbjct: 62 DQGVRYTLTVRSQEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGL 113
>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3
3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3*
1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5
1vou_5 1vow_5 ...
Length = 66
Score = 23.8 bits (51), Expect = 6.0
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 18 TKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66
T GK + + G++ K+ + IR GK F + + K +
Sbjct: 17 TGTGKVMAFKSGKRHQNTGKSGDE----IRGKGKGFVLAKAEWARMKLM 61
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 24.7 bits (54), Expect = 6.6
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 14 FDYSTKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKLSNGNRNN 73
+DY+ ++ + +G+ + ++ K + DWW+ SG+ P++YV++ + +
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPDWWKG-EVSGQVGLFPSNYVKLTTDMDPSQQWC 67
Query: 74 VENINPTMEKTR 85
+ M
Sbjct: 68 SDLHLLDMLTPT 79
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 24.4 bits (54), Expect = 8.7
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 6/20 (30%)
Query: 35 IKKT------NKDWWQVIRS 48
I+KT N W ++S
Sbjct: 327 IRKTVEWYLANTQWVNNVKS 346
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase;
chorismate, dimer, structural genomics, NPPSFA; 1.15A
{Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Length = 90
Score = 23.8 bits (52), Expect = 9.0
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 47 RSSGKPFYVPASYVEVYKKLSNGNRN 72
G P Y P E+ L+ N
Sbjct: 38 TELGLPHYDPKREEEMLAYLTAENPG 63
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8
2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8
2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Length = 65
Score = 23.3 bits (51), Expect = 9.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 18 TKDGKYVRIQEGEKLFLIKKTNKDWWQVIRSSGKPFYVPASYVEVYKKL 66
T GK V ++ G++ +K+ K IR G+ F + E K L
Sbjct: 17 TASGKVVAMKTGKRHLNWQKSGK----EIRQKGRKFVLAKPEAERIKLL 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,488,894
Number of extensions: 75715
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 211
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)