BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy676
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VAN6|SLBP_DROME Histone RNA hairpin-binding protein OS=Drosophila melanogaster
GN=Slbp PE=1 SV=1
Length = 276
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 58/73 (79%)
Query: 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKS 88
E DPAIL RRQKQID+GKNT Y+RY MV +++RT+DHP+TP K KYSRRA+DGL+K
Sbjct: 189 EADPAILSRRQKQIDYGKNTAAYERYVEMVPKDERTRDHPRTPNKYGKYSRRAFDGLVKI 248
Query: 89 WRSRLHFWDPPNE 101
WR LH +DPP +
Sbjct: 249 WRKSLHIYDPPTQ 261
>sp|Q14493|SLBP_HUMAN Histone RNA hairpin-binding protein OS=Homo sapiens GN=SLBP PE=1
SV=1
Length = 270
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
+ETD ++L+RRQKQI++GKNT+ YDRY V R R HPKTP K KYSRR+WD I
Sbjct: 128 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 187
Query: 87 KSWRSRLHFWDPPNENG 103
K W+ LHFWDPP E G
Sbjct: 188 KLWKVALHFWDPPAEEG 204
>sp|P79943|SLBP1_XENLA Histone RNA hairpin-binding protein OS=Xenopus laevis GN=slbp1 PE=1
SV=1
Length = 254
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
ETDPA++ RRQKQI++GKNT+ YDRY V R R + HP+TP K KYSRR+WD I+
Sbjct: 127 ETDPAVITRRQKQINYGKNTIAYDRYIKAVPRHLREPNVHPRTPNKFKKYSRRSWDQQIR 186
Query: 88 SWRSRLHFWDPPNENGEPNSLLLDEDDDISSLDSQ 122
WR LH WDPP G ++ED + SQ
Sbjct: 187 LWRIALHQWDPPAAEGSDLQPFMEEDMVCTETSSQ 221
>sp|Q9YGP6|SLBP2_XENLA Oocyte-specific histone RNA stem-loop-binding protein 2 OS=Xenopus
laevis GN=slbp2 PE=2 SV=1
Length = 250
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 26 LAYETDPAILLRRQKQIDFGKNTVGYDRYCSMV-KREDRTKDHPKTPPKELKYSRRAWDG 84
+ YETD A L RRQKQID+GKNTVGY Y V K E ++ HP+TP K KYSRR+WD
Sbjct: 99 VGYETDEATLHRRQKQIDYGKNTVGYQCYLQQVPKTERKSGVHPRTPNKSKKYSRRSWDM 158
Query: 85 LIKSWRSRLHFWDPPNEN 102
IK WR LH WDPP++N
Sbjct: 159 QIKLWRRDLHAWDPPSQN 176
>sp|P97440|SLBP_MOUSE Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1
SV=1
Length = 275
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
ETD ++L+RRQKQI++GKNT+ YDRY V R R HP+TP K KYSRR+WD IK
Sbjct: 129 ETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIK 188
Query: 88 SWRSRLHFWDPPNENG 103
W+ LHFWDPP E G
Sbjct: 189 LWKVALHFWDPPAEEG 204
>sp|Q09599|SLBP_CAEEL Histone RNA hairpin-binding protein OS=Caenorhabditis elegans
GN=cdl-1 PE=2 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 26 LAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTK-DHPKTPPKELKYSRRAWDG 84
L + TD A+L RR ++ID K Y RY S V DR K HP+TP K + +SRR+WD
Sbjct: 203 LGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDRIKGQHPRTPNKLINFSRRSWDT 262
Query: 85 LIKSWRSRLH 94
IK W+ L+
Sbjct: 263 QIKKWKRSLY 272
>sp|O75153|CLU_HUMAN Clustered mitochondria protein homolog OS=Homo sapiens GN=CLUH PE=1
SV=2
Length = 1309
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 32 PAILLRRQKQ------IDFGKNTVGYDRYCSMVKREDR 63
P IL R Q+Q IDFGK V + RY +++R R
Sbjct: 489 PGILERDQEQSVIYGSIDFGKTVVSHPRYLELLERTSR 526
>sp|Q5SW19|CLU_MOUSE Clustered mitochondria protein homolog OS=Mus musculus GN=Cluh PE=2
SV=2
Length = 1315
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 32 PAILLRRQKQ------IDFGKNTVGYDRYCSMVKREDR 63
P IL R Q+Q IDFGK V + RY +++R R
Sbjct: 489 PGILERDQEQSVIYGSIDFGKTVVSHPRYLELLERTSR 526
>sp|Q8IUW3|SPA2L_HUMAN Spermatogenesis-associated protein 2-like protein OS=Homo sapiens
GN=SPATA2L PE=2 SV=1
Length = 424
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 68 PKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNEN 102
P +PP EL Y W+ K W + W+PP E
Sbjct: 250 PDSPPAELAYRPPLWEQSAKLWGTGGRAWEPPAEE 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,359,344
Number of Sequences: 539616
Number of extensions: 3047260
Number of successful extensions: 6265
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6245
Number of HSP's gapped (non-prelim): 35
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)