Query psy676
Match_columns 159
No_of_seqs 110 out of 126
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 17:43:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15247 SLBP_RNA_bind: Histon 100.0 4.5E-41 9.7E-46 240.5 1.8 72 28-99 1-73 (73)
2 KOG3934|consensus 100.0 9E-38 1.9E-42 269.9 6.6 125 25-155 188-322 (333)
3 COG3207 DIT1 Pyoverdine/dityro 59.0 9.1 0.0002 34.6 2.9 102 32-138 219-325 (330)
4 KOG0282|consensus 32.4 9.3 0.0002 36.4 -1.3 22 65-89 481-502 (503)
5 PF15241 Cylicin_N: Cylicin N- 29.3 11 0.00024 29.5 -1.2 22 48-86 5-26 (110)
6 PTZ00208 65 kDa invariant surf 14.7 86 0.0019 29.7 1.2 63 83-150 210-272 (436)
7 PF15121 TMEM71: TMEM71 protei 13.9 1.1E+02 0.0023 25.2 1.4 51 106-156 75-125 (149)
8 PF05141 DIT1_PvcA: Pyoverdine 13.6 2.1E+02 0.0044 25.2 3.2 53 29-82 179-234 (278)
9 PF12995 DUF3879: Domain of un 13.3 99 0.0021 26.2 1.1 49 46-104 113-163 (186)
10 KOG3968|consensus 11.9 3.3E+02 0.0073 25.9 4.2 53 50-102 189-243 (439)
No 1
>PF15247 SLBP_RNA_bind: Histone RNA hairpin-binding protein RNA-binding domain; PDB: 2KJM_A.
Probab=100.00 E-value=4.5e-41 Score=240.46 Aligned_cols=72 Identities=57% Similarity=0.993 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHhhhHHhhhhhHHHHHHHHhhcCCCCCC-CCCCCCccccCCchhhhhHHHHHHHHhhhccCCC
Q psy676 28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTK-DHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPP 99 (159)
Q Consensus 28 ~EtD~~rL~qRqKQId~GKnT~gY~~Yi~~VPk~~R~~-~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wDp~ 99 (159)
+|+|+++|+||||||+|||||+||+|||++||+++|.+ +||.|||+|++||||+||+|||+||++||+||||
T Consensus 1 ~e~d~~rl~~RqKqI~~GK~T~gY~~Yi~~Vpk~~R~~~~hP~TP~~~~~~SrRswd~qik~WRr~LH~~Dpp 73 (73)
T PF15247_consen 1 METDERRLSQRQKQIDYGKNTIGYQNYIKAVPKHKRQPGIHPRTPNKFQKCSRRSWDGQIKKWRRALHQWDPP 73 (73)
T ss_dssp ----HHHHHHHHTTT-SS--GGGGHHHHHT-------------------------------------------
T ss_pred CCcCHHHHHHHHHHHHHhhccHHHHHHHHHcCHHhcCCCCCCCCCCccccCCHHHHHHHHHHHHHHHhccCCC
Confidence 58999999999999999999999999999999999996 9999999999999999999999999999999997
No 2
>KOG3934|consensus
Probab=100.00 E-value=9e-38 Score=269.85 Aligned_cols=125 Identities=42% Similarity=0.674 Sum_probs=105.7
Q ss_pred CCcccCCHHHHHHHhhhHHhhhhhHHHHHHHHhhcCCCCC-CCCCCCCccccCCchhhhhHHHHHHHHhhhccCCCCCCC
Q psy676 25 KLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRT-KDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENG 103 (159)
Q Consensus 25 ~~~~EtD~~rL~qRqKQId~GKnT~gY~~Yi~~VPk~~R~-~~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wDp~~e~~ 103 (159)
.+.+|+|+++|++|||||+|||||++|++||..||+++|+ |+||+|||||.|||||+||+|||+|+++||+||||.+++
T Consensus 188 ~~~~etDeaVL~RRqkqIdygKntaaY~RYv~eVP~~~R~~G~HPrTPNK~~kySRRswD~qIK~Wk~sLh~ydpPt~~~ 267 (333)
T KOG3934|consen 188 SSYTETDEAVLSRRQKQIDYGKNTAAYERYVEEVPKDERTRGDHPRTPNKYGKYSRRSWDGQIKIWKKSLHIYDPPTQAR 267 (333)
T ss_pred CcccccCHHHHHHHHHHhccchhhHHHHHHHHhcchhhcccCCCCCCchhhhhcchhhhhhHHHHHHHHhhcccCccccc
Confidence 5688999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred CCCCCcccccCC--ccccc----cccc-CCCCCCchHHHHHHHHHHhcC--CCccccccCC
Q psy676 104 EPNSLLLDEDDD--ISSLD----SQSV-DSLPCTPIQEWKRRVRAKRES--LSEDEEEDCK 155 (159)
Q Consensus 104 ~d~~~~~~~~~~--~~~~~----~~~~-~~~p~tp~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (159)
++...+-+++.+ -...+ .+++ ..+.+||+.+ .+|+| +++||++.|-
T Consensus 268 ~t~~~~~dsD~~S~agdndkeienrsvlrdlvipvTmr------pevDSmalgkFDvdsqm 322 (333)
T KOG3934|consen 268 DTAKDSNDSDSDSDAGDNDKEIENRSVLRDLVIPVTMR------PEVDSMALGKFDVDSQM 322 (333)
T ss_pred cchhccCccccccccccCcccccchhhHhhhccCcccc------cchhhhhccccchhhhc
Confidence 988766643322 11222 2222 2367888887 88888 7789999984
No 3
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.04 E-value=9.1 Score=34.64 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHHHHHHhhhHHhh--hhhHHHHHHHHh-hcCCCCCCCCCCCCccccCCchhhhhHHHHHHHHhhhccCCCCCCCCCCCC
Q psy676 32 PAILLRRQKQIDFG--KNTVGYDRYCSM-VKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSL 108 (159)
Q Consensus 32 ~~rL~qRqKQId~G--KnT~gY~~Yi~~-VPk~~R~~~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wDp~~e~~~d~~~ 108 (159)
-..+.+|.|.|+|| +...+|.|+++. .|++-|-++||.|-.--+=.|- ++--=.+|..-+| .+....++--.
T Consensus 219 yk~~~r~~~~iA~gmi~r~~A~~nll~~~Fp~~iRlSIH~hp~~g~Kfgsl--~~~~e~~f~tpwH---~~~~~~~~r~~ 293 (330)
T COG3207 219 YKALQRDAKEIAYGMIQRSWAWGNLLADQFPRAIRLSIHPHPADGLKFGSL--MMPTEDDFLTPWH---GVAVNTEDRFV 293 (330)
T ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhheEEeecCCCCCccccccc--cccCchhhcCccc---cccccccceEE
Confidence 36789999999999 456689999987 7999999988876543222232 2222244544444 33333333222
Q ss_pred cc-cccC-CcccccccccCCCCCCchHHHHHH
Q psy676 109 LL-DEDD-DISSLDSQSVDSLPCTPIQEWKRR 138 (159)
Q Consensus 109 ~~-~~~~-~~~~~~~~~~~~~p~tp~~~~~~~ 138 (159)
+. +++. -+.-+-.+..-...|-|..+|+++
T Consensus 294 ~~~~se~~~L~~s~V~~~~~~~g~~~~~w~~~ 325 (330)
T COG3207 294 LMKRSEVLELGGSLVQINGQPSGYRLPAWAAR 325 (330)
T ss_pred EEehhhhhhcccceeEeccccCCccchHHHHH
Confidence 22 1111 111122233334667788999876
No 4
>KOG0282|consensus
Probab=32.38 E-value=9.3 Score=36.44 Aligned_cols=22 Identities=50% Similarity=0.974 Sum_probs=18.8
Q ss_pred CCCCCCCccccCCchhhhhHHHHHH
Q psy676 65 KDHPKTPPKELKYSRRAWDGLIKSW 89 (159)
Q Consensus 65 ~~HP~TPnk~~k~SrRsWD~qIk~W 89 (159)
.|||.-|.+-.-|+ |||+|+.|
T Consensus 481 ~wHP~e~Skvat~~---w~G~Ikiw 502 (503)
T KOG0282|consen 481 DWHPVEPSKVATCG---WDGLIKIW 502 (503)
T ss_pred EecCCCcceeEecc---cCceeEec
Confidence 48999998888887 99999888
No 5
>PF15241 Cylicin_N: Cylicin N-terminus
Probab=29.31 E-value=11 Score=29.51 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=16.9
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCCCccccCCchhhhhHHH
Q psy676 48 TVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLI 86 (159)
Q Consensus 48 T~gY~~Yi~~VPk~~R~~~HP~TPnk~~k~SrRsWD~qI 86 (159)
.-.|+|||-..- .||.+|++|.
T Consensus 5 ~~tYDN~ipvse-----------------~SkKswNQqh 26 (110)
T PF15241_consen 5 IGTYDNYIPVSE-----------------SSKKSWNQQH 26 (110)
T ss_pred cccccceeehHH-----------------hhHHHhhhhh
Confidence 346888887664 8899999885
No 6
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=14.69 E-value=86 Score=29.67 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=43.3
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCcccccCCcccccccccCCCCCCchHHHHHHHHHHhcCCCccc
Q psy676 83 DGLIKSWRSRLHFWDPPNENGEPNSLLLDEDDDISSLDSQSVDSLPCTPIQEWKRRVRAKRESLSEDE 150 (159)
Q Consensus 83 D~qIk~WRr~LH~wDp~~e~~~d~~~~~~~~~~~~~~~~~~~~~~p~tp~~~~~~~~~~~~~~~~~~~ 150 (159)
|-....=..+|-.|+..-...... ..+.+.+...++.++.|||..-.|.--.+.-++...|+|
T Consensus 210 dvSs~~M~~ALe~We~vKPK~~~~-----a~g~~~C~~~~ss~s~PCTv~E~W~tdYk~t~~kLkeLE 272 (436)
T PTZ00208 210 DWSANALQVALNSWENVKPKKVES-----AGSDMNCNIGQSSESHPCTMTEEWQTDYKSAVEKLRELE 272 (436)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCC-----CCCCcccccCCcCCCCCCcCcccccchHHHHHHHHHHHH
Confidence 444556677888888776654322 134556667777889999999999877777666665554
No 7
>PF15121 TMEM71: TMEM71 protein family
Probab=13.87 E-value=1.1e+02 Score=25.24 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCCcccccCCcccccccccCCCCCCchHHHHHHHHHHhcCCCccccccCCC
Q psy676 106 NSLLLDEDDDISSLDSQSVDSLPCTPIQEWKRRVRAKRESLSEDEEEDCKP 156 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~p~tp~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
++-++|.+|.|.-.++|..-.+---++-+..++-|..+.-.+-|.+++|+.
T Consensus 75 DSFl~D~dGNITLsPsqTsV~YKENLVRIFRkkkr~rrsl~sLf~~~as~s 125 (149)
T PF15121_consen 75 DSFLCDEDGNITLSPSQTSVMYKENLVRIFRKKKRIRRSLSSLFSLSASKS 125 (149)
T ss_pred cceeecCCCCEeecCccceeeehhhhhHHHHhhhhhhhhhhhhcCcccchh
Confidence 344458899999999888777777778775554444444455567888875
No 8
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=13.60 E-value=2.1e+02 Score=25.17 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhhhHHhh--hhhHHHHHHHHh-hcCCCCCCCCCCCCccccCCchhhh
Q psy676 29 ETDPAILLRRQKQIDFG--KNTVGYDRYCSM-VKREDRTKDHPKTPPKELKYSRRAW 82 (159)
Q Consensus 29 EtD~~rL~qRqKQId~G--KnT~gY~~Yi~~-VPk~~R~~~HP~TPnk~~k~SrRsW 82 (159)
..+...+.+.-++|+++ +.-.+|.+.|+. .|.+-|-++||.|-.- .|+|-+-+
T Consensus 179 ~~S~~~~kk~~~~~A~~Mi~R~~A~s~lv~~~fP~~iRLSIH~~~~~~-~K~gI~L~ 234 (278)
T PF05141_consen 179 GMSKSAYKKDVSKVAKEMIQRGQAFSNLVEERFPDHIRLSIHPSTNAG-PKFGIRLL 234 (278)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEESS---TTS-SEEEB-SS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCC-ceEEEEeC
Confidence 34566677777777776 455688888876 6788999999997543 35554443
No 9
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=13.26 E-value=99 Score=26.22 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHhhcCCCCC--CCCCCCCccccCCchhhhhHHHHHHHHhhhccCCCCCCCC
Q psy676 46 KNTVGYDRYCSMVKREDRT--KDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGE 104 (159)
Q Consensus 46 KnT~gY~~Yi~~VPk~~R~--~~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wDp~~e~~~ 104 (159)
|.+..|.+|...||+++|- +| |= ..|++--|...+ -++|.=||.=+-|.
T Consensus 113 krs~i~k~y~~sv~k~dRlaAGW---TL---eQye~qyr~a~y----daVk~adP~W~~Gk 163 (186)
T PF12995_consen 113 KRSDIIKDYYMSVPKDDRLAAGW---TL---EQYERQYRQAFY----DAVKSADPNWKIGK 163 (186)
T ss_pred hHHHHHHHHHHhcCHhhhhcccc---cH---HHHHHHHHHHHH----HHHHhcCCCCCCCC
Confidence 6678999999999999997 43 22 224444443333 34566666655443
No 10
>KOG3968|consensus
Probab=11.93 E-value=3.3e+02 Score=25.91 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CCccccCCchhhhhHHHHHHH-HhhhccCCCCCC
Q psy676 50 GYDRYCSMVKREDRTKDHPK-TPPKELKYSRRAWDGLIKSWR-SRLHFWDPPNEN 102 (159)
Q Consensus 50 gY~~Yi~~VPk~~R~~~HP~-TPnk~~k~SrRsWD~qIk~WR-r~LH~wDp~~e~ 102 (159)
.|.++|..+-+..|.+.+|+ ||+.-..|||--+....++=+ ..||.=--..+.
T Consensus 189 ~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen 243 (439)
T KOG3968|consen 189 STEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISEN 243 (439)
T ss_pred HHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhc
Confidence 45566665555677899998 999999999999999997766 555544444443
Done!