Query psy676
Match_columns 159
No_of_seqs 110 out of 126
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:44:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kjm_A Histone RNA hairpin-bin 99.4 2.7E-14 9.1E-19 86.5 1.7 30 29-58 1-30 (30)
2 3bua_E HSNM1B, DNA cross-LINK 21.8 35 0.0012 21.1 1.2 15 75-89 20-34 (36)
3 3m5f_A Metal dependent phospho 11.7 79 0.0027 26.3 1.3 14 43-56 67-81 (244)
4 3kdw_A Putative sugar binding 8.5 2.9E+02 0.01 22.9 3.5 34 27-60 119-152 (221)
5 2gv5_C SFI1P; centrin, CDC31P, 8.3 1.3E+02 0.0046 20.9 1.2 17 83-99 24-40 (73)
6 3ls0_A SLL1638 protein, PSBQ; 7.7 2E+02 0.0067 21.9 2.0 21 40-60 111-131 (133)
7 3zsu_A TLL2057 protein, cyanoq 7.6 2E+02 0.0069 21.8 2.0 20 41-60 109-128 (130)
8 3fcn_A AN alpha-helical protei 6.0 3E+02 0.01 21.4 2.3 21 77-97 79-99 (164)
9 3ggz_E Vacuolar protein-sortin 5.3 3.1E+02 0.011 16.1 1.5 16 27-42 12-27 (29)
10 2f3y_B Voltage-dependent L-typ 5.2 3.3E+02 0.011 15.6 1.6 16 130-145 6-21 (26)
No 1
>2kjm_A Histone RNA hairpin-binding protein; RNA binding protein, SLBP, histone mRNA, stem-loop binding P hairpin binding protein, cytoplasm; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-14 Score=86.52 Aligned_cols=30 Identities=63% Similarity=1.062 Sum_probs=28.9
Q ss_pred cCCHHHHHHHhhhHHhhhhhHHHHHHHHhh
Q psy676 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMV 58 (159)
Q Consensus 29 EtD~~rL~qRqKQId~GKnT~gY~~Yi~~V 58 (159)
|+|+++|.+|||||+|||||+||++|+++|
T Consensus 1 e~d~~~L~~rqkqidygknT~gY~~y~~~v 30 (30)
T 2kjm_A 1 ETDESVLMRRQKQINYGKNTIAYDRYIKEV 30 (30)
T ss_dssp CCCHHHHHHHHTTTCSSCCGGGGHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhhhhHHHHHHHHhC
Confidence 789999999999999999999999999986
No 2
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=21.82 E-value=35 Score=21.11 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.4
Q ss_pred cCCchhhhhHHHHHH
Q psy676 75 LKYSRRAWDGLIKSW 89 (159)
Q Consensus 75 ~k~SrRsWD~qIk~W 89 (159)
.++|-|.||+|+-+.
T Consensus 20 a~~Ssr~FD~QVEK~ 34 (36)
T 3bua_E 20 AGYSSRRFDQQVEKY 34 (36)
T ss_pred cccchhhHHHHHHHh
Confidence 358999999999764
No 3
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=11.74 E-value=79 Score=26.28 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=12.2
Q ss_pred HhhhhhHHHHH-HHH
Q psy676 43 DFGKNTVGYDR-YCS 56 (159)
Q Consensus 43 d~GKnT~gY~~-Yi~ 56 (159)
|+||.+.+||+ |+.
T Consensus 67 DiGKa~~~FQ~k~l~ 81 (244)
T 3m5f_A 67 DIGKASKIYQRAIIN 81 (244)
T ss_dssp TGGGGBHHHHHHHHC
T ss_pred ccccCCHHHHHHHHh
Confidence 78999999999 663
No 4
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=8.47 E-value=2.9e+02 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.8
Q ss_pred cccCCHHHHHHHhhhHHhhhhhHHHHHHHHhhcC
Q psy676 27 AYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKR 60 (159)
Q Consensus 27 ~~EtD~~rL~qRqKQId~GKnT~gY~~Yi~~VPk 60 (159)
..+.++..+.+=.-...||+...-|.-|+..||-
T Consensus 119 ~~~Lt~eQie~Vkd~mTyg~v~~T~k~y~~mvP~ 152 (221)
T 3kdw_A 119 SLYLDAKQIDAVKDGMTYGVVMVTYKATVDMIPT 152 (221)
T ss_dssp TTTCCHHHHHHHHHHTTTTHHHHHHHHHHHHCTT
T ss_pred HhhcCHHHHHHHHcccceeeehhhHHHHHHHcCc
Confidence 4567777777777788899999999999999993
No 5
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell; 3.00A {Saccharomyces cerevisiae}
Probab=8.32 E-value=1.3e+02 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.817 Sum_probs=13.4
Q ss_pred hHHHHHHHHhhhccCCC
Q psy676 83 DGLIKSWRSRLHFWDPP 99 (159)
Q Consensus 83 D~qIk~WRr~LH~wDp~ 99 (159)
+.-+++|++..|+|-..
T Consensus 24 ~~fls~W~~R~~Fy~~e 40 (73)
T 2gv5_C 24 SQLFNAWRNRFCFYTEE 40 (73)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 35589999999998643
No 6
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=7.67 E-value=2e+02 Score=21.93 Aligned_cols=21 Identities=10% Similarity=0.469 Sum_probs=17.4
Q ss_pred hhHHhhhhhHHHHHHHHhhcC
Q psy676 40 KQIDFGKNTVGYDRYCSMVKR 60 (159)
Q Consensus 40 KQId~GKnT~gY~~Yi~~VPk 60 (159)
-+..|.+...+|+.|+.+||.
T Consensus 111 a~k~Y~~a~adfdafl~liP~ 131 (133)
T 3ls0_A 111 AKIQYQEALADFDSFLNLLPQ 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 356788899999999999995
No 7
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=7.55 E-value=2e+02 Score=21.76 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=17.5
Q ss_pred hHHhhhhhHHHHHHHHhhcC
Q psy676 41 QIDFGKNTVGYDRYCSMVKR 60 (159)
Q Consensus 41 QId~GKnT~gY~~Yi~~VPk 60 (159)
+..|.+...+|+.|+.+||.
T Consensus 109 ~k~Y~~a~adfdafl~liP~ 128 (130)
T 3zsu_A 109 QEGFREAEADFKAYLNSLPE 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 56788899999999999995
No 8
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family protein, structural genomics; HET: MSE; 1.45A {Rhodospirillum rubrum atcc 11170}
Probab=6.04 E-value=3e+02 Score=21.43 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.3
Q ss_pred CchhhhhHHHHHHHHhhhccC
Q psy676 77 YSRRAWDGLIKSWRSRLHFWD 97 (159)
Q Consensus 77 ~SrRsWD~qIk~WRr~LH~wD 97 (159)
.|+++|...|+..|++|-..=
T Consensus 79 r~~~sW~~tI~~~R~~I~~~L 99 (164)
T 3fcn_A 79 PDRARWRSEVVSWHNLLLDTI 99 (164)
T ss_dssp TTHHHHHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHh
Confidence 457899999999999996543
No 9
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=5.29 E-value=3.1e+02 Score=16.11 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=13.3
Q ss_pred cccCCHHHHHHHhhhH
Q psy676 27 AYETDPAILLRRQKQI 42 (159)
Q Consensus 27 ~~EtD~~rL~qRqKQI 42 (159)
..|..+..|++|++.+
T Consensus 12 ~~eekEDkLAqRLRAL 27 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRAL 27 (29)
T ss_pred ccchhhHHHHHHHHHH
Confidence 5688899999999864
No 10
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=5.18 E-value=3.3e+02 Score=15.63 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHHhcC
Q psy676 130 TPIQEWKRRVRAKRES 145 (159)
Q Consensus 130 tp~~~~~~~~~~~~~~ 145 (159)
-.+++|||+.+...|.
T Consensus 6 ~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 6 FLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhHHHHHHHHHHhHHh
Confidence 3589999998877654
Done!