Query psy676
Match_columns 159
No_of_seqs 110 out of 126
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 17:44:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ysja1 c.56.5.4 (A:4-177,A:29 14.5 34 0.0025 26.1 1.8 21 80-100 1-21 (261)
2 d1wjpa3 g.37.1.1 (A:67-107) Zi 6.1 69 0.005 18.6 0.5 17 80-96 11-27 (41)
3 d1uana_ c.134.1.1 (A:) Hypothe 5.7 1.4E+02 0.01 21.0 2.2 27 66-97 148-174 (227)
4 d1eova2 d.104.1.1 (A:205-557) 5.6 1.3E+02 0.0092 22.7 1.9 32 27-58 280-311 (353)
5 d1tdza1 a.156.1.2 (A:132-219) 4.3 2.8E+02 0.02 17.1 2.7 30 63-94 49-78 (88)
6 d1gxha_ a.28.2.1 (A:) ImmE8 (I 4.3 2.8E+02 0.02 18.0 2.7 60 31-92 11-76 (85)
7 d1pj5a2 c.3.1.2 (A:4-219,A:339 4.1 1.4E+02 0.01 20.7 1.1 10 64-73 294-303 (305)
8 d1txja_ b.88.1.2 (A:) Translat 4.1 1.5E+02 0.011 21.3 1.3 24 32-57 70-93 (171)
9 d2vlqa1 a.28.2.1 (A:4-84) ImmE 4.1 2.9E+02 0.021 17.7 2.7 22 71-92 53-74 (81)
10 d1h6qa_ b.88.1.2 (A:) Translat 3.9 1.7E+02 0.012 21.0 1.4 24 32-57 67-90 (168)
No 1
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=14.47 E-value=34 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHhhhccCCCC
Q psy676 80 RAWDGLIKSWRSRLHFWDPPN 100 (159)
Q Consensus 80 RsWD~qIk~WRr~LH~wDp~~ 100 (159)
++...+|-.|||.||+.=...
T Consensus 1 ~~~~~~li~~rr~lh~~PEl~ 21 (261)
T d1ysja1 1 KAFHTRLINMRRDLHEHPELS 21 (261)
T ss_dssp HHHHHHHHHHHHHHHHSCCCT
T ss_pred CchHHHHHHHHHHHHhCcCcC
Confidence 467788999999999864443
No 2
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.13 E-value=69 Score=18.57 Aligned_cols=17 Identities=18% Similarity=0.564 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHhhhcc
Q psy676 80 RAWDGLIKSWRSRLHFW 96 (159)
Q Consensus 80 RsWD~qIk~WRr~LH~w 96 (159)
|.|-..+..||.++-.-
T Consensus 11 rtfkssfsiwrhqvevh 27 (41)
T d1wjpa3 11 RTFKSSFSIWRHQVEVH 27 (41)
T ss_dssp EECSSHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhheec
Confidence 56777889999987543
No 3
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]}
Probab=5.67 E-value=1.4e+02 Score=20.98 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCCCCCccccCCchhhhhHHHHHHHHhhhccC
Q psy676 66 DHPKTPPKELKYSRRAWDGLIKSWRSRLHFWD 97 (159)
Q Consensus 66 ~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wD 97 (159)
.+|-.||.|..+| ..+.+++.+|..|-
T Consensus 148 ~~~f~Pn~~vdIs-----~~~~~K~~Al~~~~ 174 (227)
T d1uana_ 148 NHPFAPSFLVKIS-----AFIDQWEAAVLAYR 174 (227)
T ss_dssp SSCCCCSEEEECG-----GGHHHHHHHHHTCH
T ss_pred cccCCCCeEEech-----HHHHHHHHHHHHHH
Confidence 5777899999888 35777888888774
No 4
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.61 E-value=1.3e+02 Score=22.69 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=26.6
Q ss_pred cccCCHHHHHHHhhhHHhhhhhHHHHHHHHhh
Q psy676 27 AYETDPAILLRRQKQIDFGKNTVGYDRYCSMV 58 (159)
Q Consensus 27 ~~EtD~~rL~qRqKQId~GKnT~gY~~Yi~~V 58 (159)
..+.|+..+.+|.|...+.+....|+.|+.+.
T Consensus 280 ~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al 311 (353)
T d1eova2 280 QRIHDHALLQERMKAHGLSPEDPGLKDYCDGF 311 (353)
T ss_dssp EBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCChhhhHHHHHHHHh
Confidence 45889999999999887777766788899885
No 5
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=4.30 E-value=2.8e+02 Score=17.15 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=23.0
Q ss_pred CCCCCCCCCccccCCchhhhhHHHHHHHHhhh
Q psy676 63 RTKDHPKTPPKELKYSRRAWDGLIKSWRSRLH 94 (159)
Q Consensus 63 R~~~HP~TPnk~~k~SrRsWD~qIk~WRr~LH 94 (159)
+.++||.+|- ..+|...|...+...|+-|.
T Consensus 49 ~a~I~P~~~~--~~Ls~~~~~~L~~~i~~vl~ 78 (88)
T d1tdza1 49 LAKIHPEKET--NQLIESSIHLLHDSIIEILQ 78 (88)
T ss_dssp HTTCCTTCBG--GGCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCccchh--hHcCHHHHHHHHHHHHHHHH
Confidence 5579999975 46888888888887776553
No 6
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=4.30 E-value=2.8e+02 Score=18.00 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=35.1
Q ss_pred CHHHHHHHhhhHHhhhhhHHHHHHHHhhcCCCCCCCCCCC------CccccCCchhhhhHHHHHHHHh
Q psy676 31 DPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKT------PPKELKYSRRAWDGLIKSWRSR 92 (159)
Q Consensus 31 D~~rL~qRqKQId~GKnT~gY~~Yi~~VPk~~R~~~HP~T------Pnk~~k~SrRsWD~qIk~WRr~ 92 (159)
.+..+..=.+.|-=...|..|.. .+|-.=.+-..||.= |..-..+|=-.-=..||.||.+
T Consensus 11 TE~EFl~fl~~i~n~~~~e~~~d--~ll~hF~~iteHP~gsDLIfYP~~~~edsPegIv~~IKeWRa~ 76 (85)
T d1gxha_ 11 TETEFKKIIEDIINCEGDEKKQD--DNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAA 76 (85)
T ss_dssp CHHHHHHHHHHHHHTCSSSHHHH--HHHHHHHHTTCCTTTTHHHHSCCSSCSSCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHhcCCCCCCceeeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 34445555555544444554432 333211333557763 5566778888888999999975
No 7
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}
Probab=4.15 E-value=1.4e+02 Score=20.70 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=8.2
Q ss_pred CCCCCCCCcc
Q psy676 64 TKDHPKTPPK 73 (159)
Q Consensus 64 ~~~HP~TPnk 73 (159)
.+.||.||+-
T Consensus 294 ~g~rP~tpd~ 303 (305)
T d1pj5a2 294 DVLHPLQPRL 303 (305)
T ss_dssp CCCCTTCCCS
T ss_pred eeecCCCCCC
Confidence 4799999984
No 8
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]}
Probab=4.05 E-value=1.5e+02 Score=21.30 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=19.0
Q ss_pred HHHHHHHhhhHHhhhhhHHHHHHHHh
Q psy676 32 PAILLRRQKQIDFGKNTVGYDRYCSM 57 (159)
Q Consensus 32 ~~rL~qRqKQId~GKnT~gY~~Yi~~ 57 (159)
.-+++.|+.+..|.| ..|..||+.
T Consensus 70 DiV~~~rLqet~f~K--k~y~~yiK~ 93 (171)
T d1txja_ 70 DIVDSFQLTSTSLSK--KEYSVYIKN 93 (171)
T ss_dssp HHHHHHTCEEECCCH--HHHHHHHHH
T ss_pred eeEEeeeeeecCCCH--HHHHHHHHH
Confidence 457899999999977 568877765
No 9
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=2.9e+02 Score=17.74 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.5
Q ss_pred CccccCCchhhhhHHHHHHHHh
Q psy676 71 PPKELKYSRRAWDGLIKSWRSR 92 (159)
Q Consensus 71 Pnk~~k~SrRsWD~qIk~WRr~ 92 (159)
|..-..+|=-.-=..||.||.+
T Consensus 53 P~~~~edsPegIv~~IK~WRa~ 74 (81)
T d2vlqa1 53 PKEGDDDSPSGIVNTVKQWRAA 74 (81)
T ss_dssp CCTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHH
Confidence 4556678888888899999975
No 10
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=3.89 E-value=1.7e+02 Score=21.00 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=18.8
Q ss_pred HHHHHHHhhhHHhhhhhHHHHHHHHh
Q psy676 32 PAILLRRQKQIDFGKNTVGYDRYCSM 57 (159)
Q Consensus 32 ~~rL~qRqKQId~GKnT~gY~~Yi~~ 57 (159)
.-+++.|+.+..|.| ..|..||+.
T Consensus 67 DiV~~~rL~et~f~K--k~y~~yiK~ 90 (168)
T d1h6qa_ 67 NLVYSFRLSPTSFDK--KSYMSYIKG 90 (168)
T ss_dssp HHHHHTTCEECCCCH--HHHHHHHHH
T ss_pred EeeeccccccCCCCH--HHHHHHHHH
Confidence 567888999998866 678777765
Done!