RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy676
         (159 letters)



>2kjm_A Histone RNA hairpin-binding protein; RNA binding protein, SLBP,
          histone mRNA, stem-loop binding P hairpin binding
          protein, cytoplasm; NMR {Homo sapiens}
          Length = 30

 Score = 52.0 bits (124), Expect = 2e-10
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMV 58
          ETD ++L+RRQKQI++GKNT+ YDRY   V
Sbjct: 1  ETDESVLMRRQKQINYGKNTIAYDRYIKEV 30


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 43/164 (26%)

Query: 18  GTPGSGKK-LAYET--DPAILLRRQKQI---DFGKNTVGYDR-------YCSMVKREDRT 64
           G  GSGK  +A +      +  +   +I   +                    +       
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 65  KDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSLL-LDEDDD-------- 115
            DH       +          I++   RL     P      N LL L    +        
Sbjct: 217 SDHSSNIKLRIH--------SIQAELRRL-LKSKPY----ENCLLVLLNVQNAKAWNAFN 263

Query: 116 ------ISSLDSQSVDSLPCTPIQEWKRRVRAKRESLSEDEEED 153
                 +++   Q  D L  +        +     +L+ DE + 
Sbjct: 264 LSCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKS 305


>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
           HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
          Length = 589

 Score = 26.0 bits (58), Expect = 6.7
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 68  PKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSL 108
             +  K ++Y  R        +R+    W    E+G+    
Sbjct: 335 GTSGFKAVRYQERENFRQATEFRAAWDGWVREQESGDGMPA 375


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 7.0
 Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 4/26 (15%)

Query: 112 EDDDISSLDSQ----SVDSLPCTPIQ 133
           E   +  L +     + DS P   I+
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIK 43


>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure
           initiative II, NYSGXRC, (alpha/alpha)6 barrel domain;
           2.33A {Bacteroides thetaiotaomicron vpi-5482}
          Length = 739

 Score = 25.4 bits (55), Expect = 9.8
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)

Query: 16  GPGTPGSGKKLAYETDPAILLRRQKQ----IDFGKNTVGY 51
           G     S   L  E    +    Q +     DFGK T G+
Sbjct: 166 GATQRPSQFSLMREPQQPVAKTEQPEGGILYDFGKETFGF 205


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,485,107
Number of extensions: 136041
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 10
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.7 bits)