RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy676
         (159 letters)



>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 269

 Score = 32.6 bits (74), Expect = 0.014
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 17  PGTPGSGKKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVK 59
           P T   GK L +     + +RR + +  G N VG      +VK
Sbjct: 207 PETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVK 249


>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
           {Bacillus sp. GL1 [TaxId: 84635]}
          Length = 377

 Score = 32.4 bits (73), Expect = 0.017
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           ++ A  T  +   R  +  +   + +G+    S   +    KD         K +  A D
Sbjct: 64  REGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIVEKD-----ESARKLALDAAD 118

Query: 84  GLIKSWRSRL---HFWDPPNENGEPNSLLLD 111
            L++ WR+       W P  +      +++D
Sbjct: 119 VLMRRWRADAGIIQAWGPKGDPENGGRIIID 149


>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
           {Escherichia coli [TaxId: 562]}
          Length = 263

 Score = 29.5 bits (66), Expect = 0.15
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 17  PGTPGSGKKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVK 59
           P T   G  L +     + +RR   +  G+N VG +    +VK
Sbjct: 201 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 243


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,653
Number of extensions: 28461
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 5
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.1 bits)