BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6765
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 30 IQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQK 89
I +F I+ D LTD ++ Y + G S LVL+P +TEEV AI + NE +
Sbjct: 18 IARFTAIVG--DKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEAR 75
Query: 90 IAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALV 140
+A+ PQGGNTG+V G P EV++S +KI D S + + A++
Sbjct: 76 VALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDTSSNTITVEAGAIL 126
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G S LVL+P +TEEV AI + NE ++A+ PQGGNTG+V G P EV++S +KI
Sbjct: 50 GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIR 109
Query: 241 NFD 243
D
Sbjct: 110 EID 112
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 30 IQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS--KLVLKPKTTEEVSAILRYCNE 87
+QKF+ +L +D+ VL + D + PYN + + + T E+V +++ CNE
Sbjct: 22 VQKFRALLGDDN--VLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNE 79
Query: 88 QKIAVC--PQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
KI + G N G + +VI+ MNKI+ D
Sbjct: 80 HKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 120
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 191 TTEEVSAILRYCNEQKIAVC--PQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
T E+V +++ CNE KI + G N G + +VI+ MNKI+ D
Sbjct: 66 TVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 120
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 30 IQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS--KLVLKPKTTEEVSAILRYCNE 87
+QKF+ +L +D+ VL + D + PYN + + + T E+V +++ CNE
Sbjct: 21 VQKFRALLGDDN--VLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNE 78
Query: 88 QKIAVC--PQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
KI + G N G + +VI+ MNKI+ D
Sbjct: 79 HKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 119
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 191 TTEEVSAILRYCNEQKIAVC--PQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
T E+V +++ CNE KI + G N G + +VI+ MNKI+ D
Sbjct: 65 TVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 119
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE---VIVSASLMNKILN 124
L++ P + EEV +++ ++ + + P GG + +V P+ +E V + MNK+L
Sbjct: 140 LIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLW 199
Query: 125 FDE 127
D
Sbjct: 200 VDR 202
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE---VIVSASLMNKILN 241
L++ P + EEV +++ ++ + + P GG + +V P+ +E V + MNK+L
Sbjct: 140 LIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLW 199
Query: 242 FDE 244
D
Sbjct: 200 VDR 202
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 36 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 89
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 187 LKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 231
K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 44 FKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 89
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 123
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 124 NFDELSGNVNSMSNALVTNRSLE 146
DE N+ + A +T + LE
Sbjct: 268 WVDE--NNLTAHVEAGITGQELE 288
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 240
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 241 NFDE 244
DE
Sbjct: 268 WVDE 271
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 123
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 124 NFDELSGNVNSMSNALVTNRSLE 146
DE N+ + A +T + LE
Sbjct: 268 WVDE--NNLTAHVEAGITGQELE 288
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 240
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 241 NFDE 244
DE
Sbjct: 268 WVDE 271
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 123
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 124 NFDELSGNVNSMSNALVTNRSLE 146
DE N+ + A +T + LE
Sbjct: 268 WVDE--NNLTAHVEAGITGQELE 288
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 240
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 241 NFDE 244
DE
Sbjct: 268 WVDE 271
>pdb|3TX1|A Chain A, X-Ray Crystal Structure Of Listeria Monocytogenes Egd-E
Udp-N- Acetylenolpyruvylglucosamine Reductase (Murb)
Length = 322
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 176 FDELSGKSKLVLKPKTTEEVSAILRYCNEQKI--AVCPQGGNTGVVAGGV 223
+ + G + + + PKT EE ++ YC++ KI + G N + GG+
Sbjct: 48 YTKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGI 97
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 64 GKSKLVLKPKTTEEVSAILRYCNEQKI--AVCPQGGNTGVVAGGV 106
G + + + PKT EE ++ YC++ KI + G N + GG+
Sbjct: 53 GAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGI 97
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 166 SASLMNKILNFDEL--SGKSKLVLKPKTTEEVSAILRYCN 203
SA++ ++ NFD L SG S +L P + E++ ++LR C
Sbjct: 120 SAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,936,458
Number of Sequences: 62578
Number of extensions: 274136
Number of successful extensions: 621
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 24
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)