BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6765
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1L258|D2HDH_DANRE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio
GN=d2hgdh PE=2 SV=1
Length = 533
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 3/126 (2%)
Query: 19 RGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEV 78
R +S + + F+ +L R +TD D +K NVDWLKT +G S ++L+PKTTE V
Sbjct: 67 RLPFSRVTQEDLSFFRALLPG---RTITDPDLLKSSNVDWLKTVQGSSDVLLRPKTTEGV 123
Query: 79 SAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNA 138
S ILRYCNE+ +AVCPQGGNTG+V G VP++DE+I+S SLMN++ FD +SG + +
Sbjct: 124 SQILRYCNERNLAVCPQGGNTGLVGGSVPVFDEIILSTSLMNQVFAFDNISGILTCQAGC 183
Query: 139 LVTNRS 144
++ N S
Sbjct: 184 VLENLS 189
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 56/68 (82%)
Query: 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNK 238
+ G S ++L+PKTTE VS ILRYCNE+ +AVCPQGGNTG+V G VP++DE+I+S SLMN+
Sbjct: 107 VQGSSDVLLRPKTTEGVSQILRYCNERNLAVCPQGGNTGLVGGSVPVFDEIILSTSLMNQ 166
Query: 239 ILNFDELS 246
+ FD +S
Sbjct: 167 VFAFDNIS 174
>sp|Q7XI14|D2HDH_ORYSJ Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. japonica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 3/148 (2%)
Query: 8 RHASLATKTVERG-AYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS 66
R S A V+R AYS+LN + FK IL D+ V+ DED V N+DW+ +G S
Sbjct: 78 RSFSSAAAHVQRNPAYSVLNSDDVSYFKSILG--DSGVVQDEDRVSVANMDWMGKYKGSS 135
Query: 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
+L+L PK+T EVS IL YCN +++AV PQGGNTG+V G VP+YDEVI+S M+KI+ FD
Sbjct: 136 QLLLLPKSTAEVSKILSYCNSRRLAVVPQGGNTGLVGGSVPVYDEVIISLGGMDKIITFD 195
Query: 127 ELSGNVNSMSNALVTNRSLELSNTGVVV 154
++G + + ++ N S + N G ++
Sbjct: 196 NVNGILTCEAGCVLENLSSYVENKGFIM 223
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 9/97 (9%)
Query: 147 LSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQK 206
L ++GVV DE VS + M+ + + G S+L+L PK+T EVS IL YCN ++
Sbjct: 108 LGDSGVV------QDEDRVSVANMDWMGKY---KGSSQLLLLPKSTAEVSKILSYCNSRR 158
Query: 207 IAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
+AV PQGGNTG+V G VP+YDEVI+S M+KI+ FD
Sbjct: 159 LAVVPQGGNTGLVGGSVPVYDEVIISLGGMDKIITFD 195
>sp|B8B7X6|D2HDH_ORYSI Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. indica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 3/148 (2%)
Query: 8 RHASLATKTVERG-AYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS 66
R S A V+R AYS+LN + FK IL D+ V+ DED V N+DW+ +G S
Sbjct: 78 RSFSSAAAHVQRNPAYSVLNSDDVSYFKSILG--DSGVVQDEDRVSVANMDWMGKYKGSS 135
Query: 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
+L+L PK+T EVS IL YCN +++AV PQGGNTG+V G VP+YDEVI+S M+KI+ FD
Sbjct: 136 QLLLLPKSTAEVSKILSYCNSRRLAVVPQGGNTGLVGGSVPVYDEVIISLGGMDKIITFD 195
Query: 127 ELSGNVNSMSNALVTNRSLELSNTGVVV 154
++G + + ++ N S + N G ++
Sbjct: 196 NVNGILTCEAGCVLENLSSYVENKGFIM 223
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 9/97 (9%)
Query: 147 LSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQK 206
L ++GVV DE VS + M+ + + G S+L+L PK+T EVS IL YCN ++
Sbjct: 108 LGDSGVV------QDEDRVSVANMDWMGKY---KGSSQLLLLPKSTAEVSKILSYCNSRR 158
Query: 207 IAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
+AV PQGGNTG+V G VP+YDEVI+S M+KI+ FD
Sbjct: 159 LAVVPQGGNTGLVGGSVPVYDEVIISLGGMDKIITFD 195
>sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis
thaliana GN=D2HGDH PE=1 SV=3
Length = 559
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 3/155 (1%)
Query: 1 MLLRQFVRHASLATKTVERGA-YSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWL 59
MLL+Q+ S A ++R +S L+ + FK+IL + V+ D++ ++ N DW+
Sbjct: 70 MLLQQYKCFGSSAASLIQRNPLFSSLDSKDVSYFKEILG--EKNVVEDKERLETANTDWM 127
Query: 60 KTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLM 119
+G SKL+L PK T+EVS IL YC+ +++AV PQGGNTG+V G VP++DEVIV+ LM
Sbjct: 128 HKYKGSSKLMLLPKNTQEVSQILEYCDSRRLAVVPQGGNTGLVGGSVPVFDEVIVNVGLM 187
Query: 120 NKILNFDELSGNVNSMSNALVTNRSLELSNTGVVV 154
NKIL+FDE+SG + + ++ N + L G ++
Sbjct: 188 NKILSFDEVSGVLVCEAGCILENLATFLDTKGFIM 222
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G SKL+L PK T+EVS IL YC+ +++AV PQGGNTG+V G VP++DEVIV+ LMNKIL
Sbjct: 132 GSSKLMLLPKNTQEVSQILEYCDSRRLAVVPQGGNTGLVGGSVPVFDEVIVNVGLMNKIL 191
Query: 241 NFDELS 246
+FDE+S
Sbjct: 192 SFDEVS 197
>sp|Q1JPD3|D2HDH_BOVIN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=D2HGDH PE=2 SV=2
Length = 544
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 17 VERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTE 76
V+R +S++++ + ++++ RV+TD + ++P NVDWL+T G SK++L+P+TT+
Sbjct: 77 VQRLPFSVVSEDDLAALERVVPG---RVITDPEELEPPNVDWLRTVRGSSKVLLRPRTTQ 133
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
EV+ ILRYC+E+ +AV PQGGNTG+V G P++DE+I+S +LMN++L+F ++SG
Sbjct: 134 EVAHILRYCHERNLAVNPQGGNTGMVGGSTPVFDEIILSTALMNQVLSFHDVSG 187
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 57/66 (86%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G SK++L+P+TT+EV+ ILRYC+E+ +AV PQGGNTG+V G P++DE+I+S +LMN++L
Sbjct: 121 GSSKVLLRPRTTQEVAHILRYCHERNLAVNPQGGNTGMVGGSTPVFDEIILSTALMNQVL 180
Query: 241 NFDELS 246
+F ++S
Sbjct: 181 SFHDVS 186
>sp|Q9C1X2|YN53_SCHPO Putative D-lactate dehydrogenase C713.03, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC713.03 PE=3 SV=1
Length = 526
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 6/147 (4%)
Query: 13 ATKTVERGA-YSILNDTHIQKFKQILSNDDNRV-----LTDEDSVKPYNVDWLKTQEGKS 66
+ K++ R Y+ L++ +Q FK I+ D + + TD + +N+DW+ GK+
Sbjct: 38 SYKSLHRDPKYAKLSEQDVQVFKSIIGKDGSLIDGLDKSTDPADLDAFNIDWMNKYRGKT 97
Query: 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
+L LKPKTT++VS IL+YCN++K+AV PQGGNTG+V G VP++DE++++ LMN+I FD
Sbjct: 98 QLALKPKTTQQVSEILKYCNQKKLAVVPQGGNTGLVGGSVPVFDEIVLNLGLMNQIHTFD 157
Query: 127 ELSGNVNSMSNALVTNRSLELSNTGVV 153
E+SG + S ++ N L+ G +
Sbjct: 158 EISGVITLDSGVILENADNFLAEKGYM 184
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 57/66 (86%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
GK++L LKPKTT++VS IL+YCN++K+AV PQGGNTG+V G VP++DE++++ LMN+I
Sbjct: 95 GKTQLALKPKTTQQVSEILKYCNQKKLAVVPQGGNTGLVGGSVPVFDEIVLNLGLMNQIH 154
Query: 241 NFDELS 246
FDE+S
Sbjct: 155 TFDEIS 160
>sp|Q8CIM3|D2HDH_MOUSE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=D2hgdh PE=2 SV=3
Length = 535
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 17 VERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTE 76
V+R +S +++ + F+ I+ RV+TD + ++ NVDWLKT G SK++L+P+T+E
Sbjct: 68 VQRLPFSTVSEEDLAAFECIIPG---RVITDPEQLQTCNVDWLKTVRGCSKVLLRPQTSE 124
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
EVS ILR+C ++ +AV PQGGNTG+V G VP++DEVI+S +LMN++++F ++SG
Sbjct: 125 EVSQILRHCYKRNLAVNPQGGNTGMVGGSVPVFDEVILSTALMNQVISFHDVSG 178
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 57/66 (86%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G SK++L+P+T+EEVS ILR+C ++ +AV PQGGNTG+V G VP++DEVI+S +LMN+++
Sbjct: 112 GCSKVLLRPQTSEEVSQILRHCYKRNLAVNPQGGNTGMVGGSVPVFDEVILSTALMNQVI 171
Query: 241 NFDELS 246
+F ++S
Sbjct: 172 SFHDVS 177
>sp|P84850|D2HDH_RAT D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=D2hgdh PE=3 SV=1
Length = 535
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 17 VERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTE 76
V+R +S +++ + F+ I+ RV+TD + ++ NVDWL+T G SK++L+P+T+E
Sbjct: 68 VQRLPFSTVSEEDLAAFECIIPG---RVITDPEQLQTCNVDWLRTVRGCSKVLLRPQTSE 124
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
EVS ILR+C ++ +AV PQGGNTG+V G VP++DEVI+S +LMN++++F ++SG
Sbjct: 125 EVSQILRHCYKRNLAVNPQGGNTGMVGGSVPVFDEVILSTALMNQVISFHDVSG 178
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 57/66 (86%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G SK++L+P+T+EEVS ILR+C ++ +AV PQGGNTG+V G VP++DEVI+S +LMN+++
Sbjct: 112 GCSKVLLRPQTSEEVSQILRHCYKRNLAVNPQGGNTGMVGGSVPVFDEVILSTALMNQVI 171
Query: 241 NFDELS 246
+F ++S
Sbjct: 172 SFHDVS 177
>sp|Q8N465|D2HDH_HUMAN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=D2HGDH PE=1 SV=3
Length = 521
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 84/114 (73%), Gaps = 3/114 (2%)
Query: 17 VERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTE 76
V R +S ++ + F++I+ V+TD ++++ NVDWL+T G SK++L+P+T+E
Sbjct: 54 VRRLPFSTVSKQDLAAFERIVPGG---VVTDPEALQAPNVDWLRTLRGCSKVLLRPRTSE 110
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
EVS ILR+C+E+ +AV PQGGNTG+V G VP++DE+I+S + MN++L+F +SG
Sbjct: 111 EVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSG 164
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 57/68 (83%)
Query: 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNK 238
L G SK++L+P+T+EEVS ILR+C+E+ +AV PQGGNTG+V G VP++DE+I+S + MN+
Sbjct: 96 LRGCSKVLLRPRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNR 155
Query: 239 ILNFDELS 246
+L+F +S
Sbjct: 156 VLSFHSVS 163
>sp|P46681|DLD2_YEAST D-lactate dehydrogenase [cytochrome] 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DLD2 PE=1 SV=1
Length = 530
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 77/109 (70%)
Query: 22 YSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAI 81
+ L + FK ILS + ++ + + YN DW++ +G+SKLVL+PK+ E+VS I
Sbjct: 58 FKKLTSDDLNYFKSILSEQEILRASESEDLSFYNEDWMRKYKGQSKLVLRPKSVEKVSLI 117
Query: 82 LRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
L YCN++KIAV PQGGNTG+V G VP++DE+I+S + +NKI +FD +SG
Sbjct: 118 LNYCNDEKIAVVPQGGNTGLVGGSVPIFDELILSLANLNKIRDFDPVSG 166
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 56/66 (84%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G+SKLVL+PK+ E+VS IL YCN++KIAV PQGGNTG+V G VP++DE+I+S + +NKI
Sbjct: 100 GQSKLVLRPKSVEKVSLILNYCNDEKIAVVPQGGNTGLVGGSVPIFDELILSLANLNKIR 159
Query: 241 NFDELS 246
+FD +S
Sbjct: 160 DFDPVS 165
>sp|P39976|DLD3_YEAST D-lactate dehydrogenase [cytochrome] 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DLD3 PE=1 SV=1
Length = 496
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 74/109 (67%)
Query: 22 YSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAI 81
+ +L+ + F+ ILSND+ + + +N DW+K G+S L+L P +T++VS I
Sbjct: 24 FKVLDSEDLAYFRSILSNDEILNSQAPEELASFNQDWMKKYRGQSNLILLPNSTDKVSKI 83
Query: 82 LRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
++YCN++K+AV PQGGNT +V VP++DE+++S MNK+ +FD +SG
Sbjct: 84 MKYCNDKKLAVVPQGGNTDLVGASVPVFDEIVLSLRNMNKVRDFDPVSG 132
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 52/66 (78%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G+S L+L P +T++VS I++YCN++K+AV PQGGNT +V VP++DE+++S MNK+
Sbjct: 66 GQSNLILLPNSTDKVSKIMKYCNDKKLAVVPQGGNTDLVGASVPVFDEIVLSLRNMNKVR 125
Query: 241 NFDELS 246
+FD +S
Sbjct: 126 DFDPVS 131
>sp|P0AEP9|GLCD_ECOLI Glycolate oxidase subunit GlcD OS=Escherichia coli (strain K12)
GN=glcD PE=3 SV=1
Length = 499
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 44 VLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVA 103
+L ++ + PY D L + LV+ PK E+V+AIL C+ ++ V +G TG+
Sbjct: 34 ILHTDEEIIPYECDGLSAYRTRPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSG 93
Query: 104 GGVPLYDEVIVSASLMNKILNFD 126
G +PL V++ + +IL+ +
Sbjct: 94 GALPLEKGVLLVMARFKEILDIN 116
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 182 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILN 241
+ LV+ PK E+V+AIL C+ ++ V +G TG+ G +PL V++ + +IL+
Sbjct: 55 RPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILD 114
Query: 242 FD 243
+
Sbjct: 115 IN 116
>sp|P0AEQ0|GLCD_ECOL6 Glycolate oxidase subunit GlcD OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=glcD PE=3 SV=1
Length = 499
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 44 VLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVA 103
+L ++ + PY D L + LV+ PK E+V+AIL C+ ++ V +G TG+
Sbjct: 34 ILHTDEEIIPYECDGLSAYRTRPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSG 93
Query: 104 GGVPLYDEVIVSASLMNKILNFD 126
G +PL V++ + +IL+ +
Sbjct: 94 GALPLEKGVLLVMARFKEILDIN 116
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 182 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILN 241
+ LV+ PK E+V+AIL C+ ++ V +G TG+ G +PL V++ + +IL+
Sbjct: 55 RPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGVLLVMARFKEILD 114
Query: 242 FD 243
+
Sbjct: 115 IN 116
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168)
GN=glcD PE=3 SV=1
Length = 470
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 54 YNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVI 113
Y+ D + V+ P+ T+E+S IL C+E ++ + P+G T + G P ++
Sbjct: 29 YSYDATPQYQSMPDAVIAPRNTDEISRILTICSEHRVPIVPRGSGTNLCGGTCPTEGGLV 88
Query: 114 VSASLMNKILNFDE 127
+ MN+IL DE
Sbjct: 89 LLFKHMNQILEIDE 102
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244
V+ P+ T+E+S IL C+E ++ + P+G T + G P +++ MN+IL DE
Sbjct: 44 VIAPRNTDEISRILTICSEHRVPIVPRGSGTNLCGGTCPTEGGLVLLFKHMNQILEIDE 102
>sp|P32891|DLD1_YEAST D-lactate dehydrogenase [cytochrome] 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DLD1 PE=1 SV=2
Length = 587
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 27 DTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQ----EGKSKLVLKPKTTEEVSAIL 82
D ++ KQ+L N + + ++ + T E + +++L P TTEEVS IL
Sbjct: 108 DKVVEDLKQVLGNKPENYSDAKSDLDAHSDTYFNTHHPSPEQRPRIILFPHTTEEVSKIL 167
Query: 83 RYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSAS-LMNKILNFDEL 128
+ C++ + V P G T + +P + D + V S MN ++ FD+L
Sbjct: 168 KICHDNNMPVVPFSGGTSLEGHFLPTRIGDTITVDLSKFMNNVVKFDKL 216
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 182 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSAS-LMNK 238
+ +++L P TTEEVS IL+ C++ + V P G T + +P + D + V S MN
Sbjct: 150 RPRIILFPHTTEEVSKILKICHDNNMPVVPFSGGTSLEGHFLPTRIGDTITVDLSKFMNN 209
Query: 239 ILNFDEL 245
++ FD+L
Sbjct: 210 VVKFDKL 216
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis
thaliana GN=DLD PE=1 SV=1
Length = 567
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 13 ATKTVERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSV----KPYNVDWLKTQEGKSKL 68
+T+ V +G Y + I + K IL +DN + TD D KP N +
Sbjct: 94 STEAVVKGEYKQVPKELISQLKTIL--EDN-LTTDYDERYFHGKPQNS--FHKAVNIPDV 148
Query: 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKI 122
V+ P++ EEVS IL+ CNE K+ + P GG T + + V + SLM ++
Sbjct: 149 VVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKGGVCIDMSLMKRV 202
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 160 YDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV 219
YDE N +F + +V+ P++ EEVS IL+ CNE K+ + P GG T +
Sbjct: 126 YDERYFHGKPQN---SFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIE 182
Query: 220 AGGVPLYDEVIVSASLMNKI 239
+ V + SLM ++
Sbjct: 183 GHTLAPKGGVCIDMSLMKRV 202
>sp|P09788|DH4C_PSEPU 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit
OS=Pseudomonas putida GN=pchF PE=1 SV=3
Length = 521
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 30 IQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS--KLVLKPKTTEEVSAILRYCNE 87
+QKF+ +L +D+ VL + D + PYN + + + T E+V +++ CNE
Sbjct: 22 VQKFRALLGDDN--VLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNE 79
Query: 88 QKIAVC--PQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
KI + G N G + +VI+ MNKI+ D
Sbjct: 80 HKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 120
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 191 TTEEVSAILRYCNEQKIAVC--PQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
T E+V +++ CNE KI + G N G + +VI+ MNKI+ D
Sbjct: 66 TVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 120
>sp|Q50685|Y2280_MYCTU Uncharacterized FAD-linked oxidoreductase Rv2280 OS=Mycobacterium
tuberculosis GN=Rv2280 PE=1 SV=1
Length = 459
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 32 KFKQILSNDDNRVLTDEDSVKPYNVDW-LKTQEGKSKLVLKPKTTEEVSAILRYCNEQKI 90
+F +I+ N + +LT + + Y D L K KP T EEV+ +L+ +E +
Sbjct: 7 RFSEIVGNAN--LLTGDAIPEDYAHDEELTGPPQKPAYAAKPATPEEVAQLLKAASENGV 64
Query: 91 AVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
V +G G+ P+ +++S MNK+L D
Sbjct: 65 PVTARGSGCGLSGAARPVEGGLLISFDRMNKVLEVD 100
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 177 DELSG---KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 233
+EL+G K KP T EEV+ +L+ +E + V +G G+ P+ +++S
Sbjct: 31 EELTGPPQKPAYAAKPATPEEVAQLLKAASENGVPVTARGSGCGLSGAARPVEGGLLISF 90
Query: 234 SLMNKILNFD 243
MNK+L D
Sbjct: 91 DRMNKVLEVD 100
>sp|Q46911|YGCU_ECOLI Uncharacterized FAD-linked oxidoreductase YgcU OS=Escherichia coli
(strain K12) GN=ygcU PE=3 SV=4
Length = 484
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 30 IQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQ---EGKSKL-----VLKPKTTEEVSAI 81
+ + K+I+ D RV+TDE +K ++D + G L V+K +TE+VS +
Sbjct: 9 VDQLKEIVGAD--RVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRV 66
Query: 82 LRYCNEQKIAVCPQGGNTGVVAG-GVPLYDEVIVSASLMNKILNFD 126
L + N KI P+ G + G + + V++ S MN+I+N D
Sbjct: 67 LNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINID 112
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 134 SMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKL-----VLK 188
S+S A + ++ E+ V+ DE ++ + +++ F ++ G L V+K
Sbjct: 2 SLSRAAIVDQLKEIVGADRVIT-----DETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVK 56
Query: 189 PKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAG-GVPLYDEVIVSASLMNKILNFD 243
+TE+VS +L + N KI P+ G + G + + V++ S MN+I+N D
Sbjct: 57 LGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINID 112
>sp|Q8X7S0|YGCU_ECO57 Uncharacterized FAD-linked oxidoreductase YgcU OS=Escherichia coli
O157:H7 GN=ygcU PE=3 SV=1
Length = 484
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 30 IQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQ---EGKSKL-----VLKPKTTEEVSAI 81
+ + K+I+ D RV+TDE +K ++D + G L V+K +TE+VS +
Sbjct: 9 VDQLKEIVGAD--RVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRV 66
Query: 82 LRYCNEQKIAVCPQGGNTGVVAG-GVPLYDEVIVSASLMNKILNFD 126
L + N KI P+ G + G + + V++ S MN+I+N D
Sbjct: 67 LNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINID 112
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 134 SMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKL-----VLK 188
S+S A + ++ E+ V+ DE ++ + +++ F ++ G L V+K
Sbjct: 2 SLSRAAIVDQLKEIVGADRVIT-----DETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVK 56
Query: 189 PKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAG-GVPLYDEVIVSASLMNKILNFD 243
+TE+VS +L + N KI P+ G + G + + V++ S MN+I+N D
Sbjct: 57 LGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINID 112
>sp|Q12627|DLD1_KLULA D-lactate dehydrogenase [cytochrome], mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DLD1 PE=3
SV=2
Length = 576
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 32 KFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKS----KLVLKPKTTEEVSAILRYCNE 87
+ K +L ND +D + ++ + + ++ ++VL P+ TE+VS +L+ C++
Sbjct: 106 ELKDVLENDPENFTVAKDDLDAHSDTYFNSHHAEANQRPEIVLYPRNTEDVSKLLKICHK 165
Query: 88 QKIAVCPQGGNTGVVAGGVP 107
I V P G T + +P
Sbjct: 166 YSIPVIPFSGGTSLEGHFLP 185
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP 224
E + + ++VL P+ TE+VS +L+ C++ I V P G T + +P
Sbjct: 139 EANQRPEIVLYPRNTEDVSKLLKICHKYSIPVIPFSGGTSLEGHFLP 185
>sp|P45295|LDHD_HAEIN D-lactate dehydrogenase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=dld PE=3 SV=1
Length = 564
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 44 VLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVA 103
++TD + Y + + G + V++P T E I++ C E + V Q NTG+
Sbjct: 19 IITDPTKTEAYRSGY-RFGTGNALAVVRPATLLEFWNIVKVCVEHDVIVINQAANTGLTG 77
Query: 104 GGVP---LYDEVIVSASLM 119
G P YD IV + M
Sbjct: 78 GSTPDGNDYDRDIVVINTM 96
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP---LYDEVIVSASLM 236
+G + V++P T E I++ C E + V Q NTG+ G P YD IV + M
Sbjct: 37 TGNALAVVRPATLLEFWNIVKVCVEHDVIVINQAANTGLTGGSTPDGNDYDRDIVVINTM 96
>sp|O47881|GLDH_BRAOL L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica
oleracea PE=1 SV=1
Length = 600
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W T E +++ +P+T ++ A+++ +E+K + P G +G+ G+ L +V+
Sbjct: 104 NWSGTHEVQTRNFNQPETLADLEALVKEAHEKKNRIRPVG--SGLSPNGIGLSRSGMVNL 161
Query: 117 SLMNKILNFDELSGNVN 133
+LM+K+L D+ V
Sbjct: 162 ALMDKVLEVDKEKKRVR 178
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens
GN=LDHD PE=1 SV=1
Length = 507
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 127
V+ P+ E+VS + C Q + + P G TG+ G + V V+ + M++IL ++
Sbjct: 69 VVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILELNQ 127
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244
V+ P+ E+VS + C Q + + P G TG+ G + V V+ + M++IL ++
Sbjct: 69 VVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILELNQ 127
>sp|Q9SU56|GLDH_ARATH L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis
thaliana GN=GLDH PE=1 SV=1
Length = 610
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W T E +++ +P+ ++ A+++ +E+K+ + P G +G+ G+ L +V+
Sbjct: 114 NWSGTHEVQTRNFNQPENLADLEALVKESHEKKLRIRPVG--SGLSPNGIGLSRSGMVNL 171
Query: 117 SLMNKILNFDE 127
+LM+K+L D+
Sbjct: 172 ALMDKVLEVDK 182
>sp|Q1QUR0|LEU3_CHRSD 3-isopropylmalate dehydrogenase OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=leuB
PE=3 SV=2
Length = 359
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 70 LKPKTTEEVSAILRYCNEQKI-AVCPQG--GNTGVVAGGVPLYDEVIVSASLMNKIL 123
+ P+ T E IL C E + A +G G G+ A GVPL DE + SA + +L
Sbjct: 13 IGPEITREAVKILNACREAGLEASIEEGLVGGAGIDAHGVPLPDETLASAKAADAVL 69
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 187 LKPKTTEEVSAILRYCNEQKI-AVCPQG--GNTGVVAGGVPLYDEVIVSASLMNKIL 240
+ P+ T E IL C E + A +G G G+ A GVPL DE + SA + +L
Sbjct: 13 IGPEITREAVKILNACREAGLEASIEEGLVGGAGIDAHGVPLPDETLASAKAADAVL 69
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE---VIVSASLMNKILN 124
L++ P + EEV +++ ++ + + P GG + +V P+ +E V + MNK+L
Sbjct: 143 LIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLW 202
Query: 125 FDE 127
D
Sbjct: 203 VDR 205
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE---VIVSASLMNKILN 241
L++ P + EEV +++ ++ + + P GG + +V P+ +E V + MNK+L
Sbjct: 143 LIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLW 202
Query: 242 FDE 244
D
Sbjct: 203 VDR 205
>sp|Q4L4G3|MURB_STAHJ UDP-N-acetylenolpyruvoylglucosamine reductase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=murB PE=3 SV=1
Length = 307
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 172 KILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV--AGGV 223
K + E G + L P E+V AI+RY E+ I V G + ++ GG+
Sbjct: 27 KRYTYTETGGNADFYLSPTKNEDVQAIVRYAKEKDIPVTYLGNGSNIIIREGGI 80
>sp|Q2N850|GLMM_ERYLH Phosphoglucosamine mutase OS=Erythrobacter litoralis (strain
HTCC2594) GN=glmM PE=3 SV=1
Length = 452
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 30 IQKFKQILSN---DDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAIL 82
+K Q+L N + R L D+DSV+ D K +GK +LV++P TE V ++
Sbjct: 374 FEKVPQLLKNVRYEGGRPL-DKDSVQTAIADAEKALDGKGRLVIRPSGTEPVIRVM 428
>sp|Q2YUM3|COAW_STAAB Type II pantothenate kinase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=coaW PE=3 SV=1
Length = 267
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q8NVG0|COAW_STAAW Type II pantothenate kinase OS=Staphylococcus aureus (strain MW2)
GN=coaW PE=3 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q6G7I0|COAW_STAAS Type II pantothenate kinase OS=Staphylococcus aureus (strain
MSSA476) GN=coaW PE=1 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q5HE70|COAW_STAAC Type II pantothenate kinase OS=Staphylococcus aureus (strain COL)
GN=coaW PE=3 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q2FWC7|COAW_STAA8 Type II pantothenate kinase OS=Staphylococcus aureus (strain NCTC
8325) GN=coaW PE=1 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q2FEZ8|COAW_STAA3 Type II pantothenate kinase OS=Staphylococcus aureus (strain
USA300) GN=coaW PE=3 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q6GEU5|COAW_STAAR Type II pantothenate kinase OS=Staphylococcus aureus (strain
MRSA252) GN=coaW PE=3 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q7A4D4|COAW_STAAN Type II pantothenate kinase OS=Staphylococcus aureus (strain N315)
GN=coaW PE=3 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q99SC8|COAW_STAAM Type II pantothenate kinase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=coaW PE=1 SV=1
Length = 267
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIV 114
QE ++ K + T+ + ++ + N+Q+I +C GGN GV+A + + ++ V
Sbjct: 16 QEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFV 69
>sp|Q90YK3|GGLO_SCYTO L-gulonolactone oxidase OS=Scyliorhinus torazame GN=GULO PE=2 SV=1
Length = 440
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W T + +L +P T EE+ IL N++ V G G + D +V
Sbjct: 12 NWATTYSCEPELYFEPTTVEEIRQILELANQRNKRVKVVG--CGHSPSDIACTDNYLVRL 69
Query: 117 SLMNKILNFDELSGNVNSMSNALVTNRS-------LELSNTGVV 153
+ +N+IL D+ + + + L+++ + L LSN G V
Sbjct: 70 NKLNRILQVDKERKWITAEAGILLSDLNEKLDALGLALSNIGAV 113
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 123
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 124 NFDELSGNVNSMSNALVTNRSLE 146
DE N+ + A +T + LE
Sbjct: 268 WVDE--NNLTAHVEAGITGQELE 288
>sp|Q8CPZ7|MURB_STAES UDP-N-acetylenolpyruvoylglucosamine reductase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=murB PE=3 SV=2
Length = 306
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 172 KILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV--AGGV 223
K + E G++ L P EEV AI+++ +E I V G + ++ GG+
Sbjct: 26 KRYTYTETGGEADFYLSPTKNEEVQAIVKFAHENSIPVTYLGNGSNIIIREGGI 79
>sp|Q5HQZ1|MURB_STAEQ UDP-N-acetylenolpyruvoylglucosamine reductase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=murB PE=3
SV=1
Length = 306
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 172 KILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV--AGGV 223
K + E G++ L P EEV AI+++ +E I V G + ++ GG+
Sbjct: 26 KRYTYTETGGEADFYLSPTKNEEVQAIVKFAHENSIPVTYLGNGSNIIIREGGI 79
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKIL 123
+VL P ++V I+ + + + P GG T V G + DE + + S MN+IL
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 124 NFDELSGNVNSMSNALVTNRSLE 146
DE N+ + A +T + LE
Sbjct: 268 WVDE--NNLTAHVEAGITGQELE 288
>sp|P58710|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3
Length = 440
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W KT ++ +P + EV +L +Q V GG G + D ++
Sbjct: 12 NWAKTYGCSPEMYYQPTSVGEVREVLALARQQNKKVKVVGG--GHSPSDIACTDGFMIHM 69
Query: 117 SLMNKILNFDELSGNVNSMSNALVTN-------RSLELSNTGVV 153
MN++L D+ V + L+T+ L LSN G V
Sbjct: 70 GKMNRVLQVDKEKKQVTVEAGILLTDLHPQLDKHGLALSNLGAV 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,562,259
Number of Sequences: 539616
Number of extensions: 3640090
Number of successful extensions: 8613
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 8506
Number of HSP's gapped (non-prelim): 145
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)