Query psy6765
Match_columns 246
No_of_seqs 335 out of 2748
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:50:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11183 D-lactate dehydrogena 99.9 2.1E-24 4.6E-29 197.4 13.0 130 27-160 3-137 (564)
2 PRK11230 glycolate oxidase sub 99.9 5.9E-24 1.3E-28 197.4 14.3 145 24-170 16-161 (499)
3 PLN02805 D-lactate dehydrogena 99.9 5E-23 1.1E-27 192.7 15.0 146 25-174 94-241 (555)
4 KOG1232|consensus 99.9 4.4E-23 9.6E-28 178.7 6.7 143 16-160 41-184 (511)
5 COG0277 GlcD FAD/FMN-containin 99.9 2.6E-22 5.7E-27 184.9 10.7 139 33-175 2-141 (459)
6 PF01565 FAD_binding_4: FAD bi 99.8 1.6E-19 3.5E-24 140.6 11.6 108 66-174 1-109 (139)
7 TIGR00387 glcD glycolate oxida 99.8 1.1E-18 2.4E-23 159.2 9.6 102 69-170 1-103 (413)
8 PLN02441 cytokinin dehydrogena 99.8 1.6E-18 3.5E-23 160.6 10.7 125 42-167 41-173 (525)
9 TIGR01676 GLDHase galactonolac 99.8 3.9E-18 8.5E-23 158.1 11.0 118 56-175 52-169 (541)
10 TIGR01678 FAD_lactone_ox sugar 99.7 1.2E-17 2.6E-22 153.0 11.8 118 56-175 5-122 (438)
11 TIGR01677 pln_FAD_oxido plant- 99.7 2.3E-17 4.9E-22 154.5 12.0 125 51-175 17-144 (557)
12 PLN02465 L-galactono-1,4-lacto 99.7 2.9E-16 6.2E-21 146.8 12.4 119 56-176 87-205 (573)
13 TIGR01679 bact_FAD_ox FAD-link 99.7 1.4E-16 3E-21 145.6 9.6 114 56-174 2-115 (419)
14 PRK13906 murB UDP-N-acetylenol 99.7 6.4E-16 1.4E-20 135.4 12.8 122 27-160 4-131 (307)
15 PRK14652 UDP-N-acetylenolpyruv 99.7 8.8E-16 1.9E-20 134.2 13.0 122 26-160 3-131 (302)
16 PRK12436 UDP-N-acetylenolpyruv 99.7 8.1E-16 1.8E-20 134.7 12.3 120 29-160 6-131 (305)
17 KOG1231|consensus 99.6 3.7E-15 7.9E-20 132.4 11.0 129 32-160 29-165 (505)
18 TIGR00179 murB UDP-N-acetyleno 99.6 6.3E-15 1.4E-19 128.0 10.2 97 59-160 6-108 (284)
19 PRK13905 murB UDP-N-acetylenol 99.6 1.1E-14 2.3E-19 127.5 10.5 106 46-160 14-126 (298)
20 PRK11183 D-lactate dehydrogena 99.5 2.7E-14 5.8E-19 131.4 8.3 67 179-245 35-106 (564)
21 PRK11282 glcE glycolate oxidas 99.5 9.5E-14 2.1E-18 123.6 10.7 99 74-174 3-103 (352)
22 PRK14653 UDP-N-acetylenolpyruv 99.5 6.5E-13 1.4E-17 115.7 11.9 120 26-160 2-127 (297)
23 PRK13903 murB UDP-N-acetylenol 99.4 7.7E-13 1.7E-17 118.0 11.2 106 47-160 17-128 (363)
24 KOG4730|consensus 99.4 1.6E-13 3.5E-18 122.1 6.6 115 61-177 45-159 (518)
25 PRK14649 UDP-N-acetylenolpyruv 99.4 6.5E-13 1.4E-17 115.9 10.2 105 48-159 6-117 (295)
26 PF01565 FAD_binding_4: FAD bi 99.4 4.3E-13 9.3E-18 104.3 7.4 63 183-246 1-63 (139)
27 KOG1233|consensus 99.4 5.6E-13 1.2E-17 116.7 8.5 115 58-172 153-272 (613)
28 PRK11230 glycolate oxidase sub 99.4 7.4E-13 1.6E-17 123.4 8.8 68 179-246 52-119 (499)
29 PLN02805 D-lactate dehydrogena 99.4 6.6E-13 1.4E-17 124.8 8.0 66 181-246 132-197 (555)
30 COG0277 GlcD FAD/FMN-containin 99.3 1.5E-12 3.2E-17 120.1 7.4 68 178-246 27-94 (459)
31 PRK14650 UDP-N-acetylenolpyruv 99.3 1.2E-11 2.5E-16 107.7 9.2 110 42-160 12-128 (302)
32 KOG1233|consensus 99.3 6.5E-12 1.4E-16 110.1 7.5 105 134-246 110-228 (613)
33 PRK14648 UDP-N-acetylenolpyruv 99.3 1.7E-11 3.7E-16 108.3 9.7 112 42-160 9-129 (354)
34 TIGR00387 glcD glycolate oxida 99.3 6.1E-12 1.3E-16 114.9 6.3 61 186-246 1-61 (413)
35 COG0812 MurB UDP-N-acetylmuram 99.2 1.1E-10 2.4E-15 100.5 10.3 106 48-160 6-117 (291)
36 PRK00046 murB UDP-N-acetylenol 99.2 1.1E-10 2.5E-15 103.0 9.1 105 48-160 6-118 (334)
37 KOG1232|consensus 99.1 4.1E-11 8.9E-16 104.8 2.9 69 178-246 85-153 (511)
38 TIGR01678 FAD_lactone_ox sugar 99.1 2.6E-10 5.7E-15 104.7 7.7 66 179-246 11-76 (438)
39 PLN02441 cytokinin dehydrogena 99.1 3.6E-10 7.7E-15 105.3 8.1 66 179-245 61-134 (525)
40 TIGR01676 GLDHase galactonolac 99.0 6.3E-10 1.4E-14 103.7 7.9 66 179-246 58-123 (541)
41 TIGR01677 pln_FAD_oxido plant- 99.0 1.5E-09 3.2E-14 102.2 8.4 69 178-246 27-98 (557)
42 PRK12436 UDP-N-acetylenolpyruv 98.9 2.3E-09 4.9E-14 94.1 6.4 69 171-243 25-95 (305)
43 TIGR01679 bact_FAD_ox FAD-link 98.9 4.2E-09 9.1E-14 96.5 7.0 63 179-246 8-70 (419)
44 KOG1231|consensus 98.9 6.9E-09 1.5E-13 92.9 7.6 65 178-242 59-128 (505)
45 PLN02465 L-galactono-1,4-lacto 98.8 1.1E-08 2.5E-13 96.1 7.7 65 179-245 93-157 (573)
46 TIGR00179 murB UDP-N-acetyleno 98.8 8.5E-09 1.8E-13 89.7 6.1 70 173-244 3-72 (284)
47 PRK13906 murB UDP-N-acetylenol 98.8 1.1E-08 2.4E-13 89.8 6.5 69 171-243 25-95 (307)
48 PRK14652 UDP-N-acetylenolpyruv 98.7 2.8E-08 6.1E-13 87.1 7.2 66 171-239 24-92 (302)
49 PRK13905 murB UDP-N-acetylenol 98.7 1.9E-08 4.1E-13 88.1 6.1 71 171-243 19-90 (298)
50 PRK14651 UDP-N-acetylenolpyruv 98.6 9.9E-08 2.2E-12 82.1 7.9 94 48-160 6-106 (273)
51 PRK13904 murB UDP-N-acetylenol 98.4 6.5E-07 1.4E-11 76.4 7.3 93 48-160 4-101 (257)
52 PRK13903 murB UDP-N-acetylenol 98.4 5.5E-07 1.2E-11 80.7 6.4 68 171-243 21-90 (363)
53 PRK14649 UDP-N-acetylenolpyruv 98.4 7.5E-07 1.6E-11 77.9 6.1 66 171-239 9-77 (295)
54 PRK14653 UDP-N-acetylenolpyruv 98.3 1.2E-06 2.7E-11 76.5 5.5 70 171-243 22-91 (297)
55 KOG4730|consensus 98.0 1.1E-05 2.4E-10 72.7 5.1 64 181-246 48-111 (518)
56 PRK14650 UDP-N-acetylenolpyruv 97.9 2E-05 4.3E-10 69.0 5.8 69 171-243 21-92 (302)
57 PRK14648 UDP-N-acetylenolpyruv 97.9 2E-05 4.4E-10 70.1 5.4 66 171-239 18-85 (354)
58 COG0812 MurB UDP-N-acetylmuram 97.7 9.9E-05 2.1E-09 63.9 6.2 70 171-244 9-80 (291)
59 PRK00046 murB UDP-N-acetylenol 97.6 7.5E-05 1.6E-09 66.3 5.2 67 171-242 9-76 (334)
60 PF00941 FAD_binding_5: FAD bi 96.4 0.0054 1.2E-07 49.3 4.9 76 66-146 2-80 (171)
61 PRK09799 putative oxidoreducta 96.2 0.022 4.8E-07 48.9 7.8 75 68-146 4-78 (258)
62 PRK14651 UDP-N-acetylenolpyruv 96.1 0.0085 1.8E-07 51.8 4.7 59 171-239 9-70 (273)
63 TIGR03312 Se_sel_red_FAD proba 95.8 0.043 9.3E-07 47.1 7.5 73 69-145 4-76 (257)
64 TIGR02963 xanthine_xdhA xanthi 94.5 0.14 3E-06 47.8 7.5 80 66-149 192-273 (467)
65 KOG1262|consensus 93.7 0.023 5E-07 51.0 0.6 58 112-169 104-161 (543)
66 TIGR03195 4hydrxCoA_B 4-hydrox 93.1 0.22 4.8E-06 44.2 5.8 74 68-145 6-81 (321)
67 PRK09971 xanthine dehydrogenas 93.0 0.32 7E-06 42.5 6.6 74 68-145 6-82 (291)
68 TIGR03199 pucC xanthine dehydr 92.8 0.19 4.2E-06 43.2 4.9 70 72-145 1-73 (264)
69 PRK13904 murB UDP-N-acetylenol 91.2 0.23 5E-06 42.6 3.5 59 170-243 6-65 (257)
70 PLN02906 xanthine dehydrogenas 88.3 1 2.2E-05 47.4 6.2 79 67-149 229-309 (1319)
71 PLN00192 aldehyde oxidase 87.3 1.8 3.9E-05 45.7 7.3 84 66-150 233-317 (1344)
72 TIGR02969 mam_aldehyde_ox alde 85.9 2.1 4.5E-05 45.2 6.9 80 67-150 237-318 (1330)
73 TIGR01182 eda Entner-Doudoroff 80.4 4.4 9.6E-05 33.5 5.5 121 65-213 9-131 (204)
74 PRK13237 tyrosine phenol-lyase 78.3 28 0.0006 32.6 10.5 134 71-218 193-348 (460)
75 COG1319 CoxM Aerobic-type carb 76.0 9.7 0.00021 33.2 6.5 76 66-145 3-81 (284)
76 COG4981 Enoyl reductase domain 75.4 4.5 9.7E-05 38.3 4.4 70 63-141 149-225 (717)
77 PRK09799 putative oxidoreducta 71.1 9.1 0.0002 32.8 5.2 52 185-239 4-57 (258)
78 PF00941 FAD_binding_5: FAD bi 70.6 2.7 5.9E-05 33.6 1.7 53 183-239 2-56 (171)
79 TIGR03312 Se_sel_red_FAD proba 68.3 12 0.00026 32.1 5.3 48 186-236 4-51 (257)
80 COG4981 Enoyl reductase domain 63.1 12 0.00027 35.5 4.5 150 54-218 24-193 (717)
81 PF07317 YcgR: Flagellar regul 62.6 58 0.0013 23.8 7.9 68 73-156 5-72 (108)
82 COG4359 Uncharacterized conser 61.9 9.4 0.0002 31.2 3.2 24 78-101 78-101 (220)
83 PF15608 PELOTA_1: PELOTA RNA 60.9 13 0.00027 27.2 3.4 36 63-98 53-89 (100)
84 COG4630 XdhA Xanthine dehydrog 60.6 23 0.00051 32.2 5.7 83 63-150 200-285 (493)
85 cd06565 GH20_GcnA-like Glycosy 60.4 22 0.00048 31.2 5.6 23 72-94 56-78 (301)
86 PF04227 Indigoidine_A: Indigo 57.6 26 0.00057 30.6 5.4 111 78-207 99-213 (293)
87 cd07033 TPP_PYR_DXS_TK_like Py 57.3 19 0.0004 28.2 4.2 33 63-95 120-153 (156)
88 COG4359 Uncharacterized conser 57.3 12 0.00027 30.5 3.1 25 195-219 78-102 (220)
89 PRK04322 peptidyl-tRNA hydrola 57.0 26 0.00056 26.1 4.7 37 62-98 44-81 (113)
90 KOG3282|consensus 55.4 26 0.00056 28.4 4.6 33 62-94 121-153 (190)
91 cd02742 GH20_hexosaminidase Be 55.0 13 0.00028 32.6 3.2 30 72-101 68-99 (303)
92 cd06568 GH20_SpHex_like A subg 54.9 13 0.00028 33.1 3.2 29 73-101 72-102 (329)
93 cd02742 GH20_hexosaminidase Be 53.8 14 0.0003 32.4 3.2 22 191-212 70-91 (303)
94 cd06568 GH20_SpHex_like A subg 52.9 14 0.00031 32.8 3.2 22 191-212 73-94 (329)
95 COG1920 Predicted nucleotidylt 52.2 9.1 0.0002 31.4 1.6 72 28-101 36-128 (210)
96 PF00728 Glyco_hydro_20: Glyco 51.7 13 0.00028 32.9 2.7 30 72-101 69-100 (351)
97 cd02407 PTH2_family Peptidyl-t 51.1 31 0.00068 25.7 4.3 33 61-93 45-77 (115)
98 PF00728 Glyco_hydro_20: Glyco 50.8 14 0.00029 32.8 2.7 28 191-218 71-100 (351)
99 cd06570 GH20_chitobiase-like_1 50.8 17 0.00036 32.2 3.2 30 72-101 64-95 (311)
100 PF02779 Transket_pyr: Transke 50.5 27 0.00058 27.9 4.2 36 63-98 134-172 (178)
101 cd06570 GH20_chitobiase-like_1 50.3 17 0.00037 32.1 3.2 29 190-218 65-95 (311)
102 cd06562 GH20_HexA_HexB-like Be 50.2 17 0.00036 32.6 3.2 28 74-101 68-97 (348)
103 cd06563 GH20_chitobiase-like T 50.2 17 0.00036 32.7 3.2 28 74-101 84-113 (357)
104 cd06565 GH20_GcnA-like Glycosy 49.6 17 0.00038 31.8 3.2 23 190-212 57-79 (301)
105 cd03062 TRX_Fd_Sucrase TRX-lik 48.8 62 0.0013 23.2 5.5 61 26-92 20-89 (97)
106 TIGR02617 tnaA_trp_ase tryptop 48.5 1.5E+02 0.0032 27.9 9.0 136 72-218 200-356 (467)
107 cd06563 GH20_chitobiase-like T 48.4 18 0.0004 32.5 3.2 22 191-212 84-105 (357)
108 TIGR00283 arch_pth2 peptidyl-t 48.4 41 0.00089 25.1 4.6 37 63-99 47-84 (115)
109 cd06564 GH20_DspB_LnbB-like Gl 47.7 17 0.00037 32.2 2.8 28 73-100 79-108 (326)
110 KOG2499|consensus 47.4 17 0.00038 33.9 2.8 30 191-220 248-279 (542)
111 PF01981 PTH2: Peptidyl-tRNA h 47.1 39 0.00084 25.0 4.3 37 63-99 48-85 (116)
112 cd06562 GH20_HexA_HexB-like Be 46.8 20 0.00044 32.1 3.2 29 191-219 68-98 (348)
113 cd06564 GH20_DspB_LnbB-like Gl 46.4 18 0.00039 32.0 2.8 22 191-212 80-101 (326)
114 KOG2212|consensus 46.4 54 0.0012 29.6 5.6 68 27-94 40-113 (504)
115 PF13380 CoA_binding_2: CoA bi 45.9 1.1E+02 0.0024 22.6 6.6 76 136-215 12-88 (116)
116 cd06569 GH20_Sm-chitobiase-lik 45.7 21 0.00046 33.2 3.2 28 74-101 95-124 (445)
117 KOG1199|consensus 45.7 21 0.00045 29.1 2.7 55 190-244 65-121 (260)
118 PF02601 Exonuc_VII_L: Exonucl 44.9 22 0.00048 31.2 3.1 36 66-101 42-89 (319)
119 cd02429 PTH2_like Peptidyl-tRN 43.7 58 0.0013 24.4 4.7 33 63-95 53-85 (116)
120 cd06360 PBP1_alkylbenzenes_lik 43.5 1.4E+02 0.003 25.6 8.0 148 64-216 64-225 (336)
121 PRK07094 biotin synthase; Prov 43.5 99 0.0021 27.0 7.0 122 74-208 71-210 (323)
122 cd06569 GH20_Sm-chitobiase-lik 41.0 27 0.0006 32.5 3.2 28 191-218 95-124 (445)
123 cd07036 TPP_PYR_E1-PDHc-beta_l 40.8 47 0.001 26.4 4.1 33 63-95 131-164 (167)
124 cd02430 PTH2 Peptidyl-tRNA hyd 40.6 66 0.0014 24.0 4.6 36 63-98 47-83 (115)
125 cd05014 SIS_Kpsf KpsF-like pro 40.5 52 0.0011 24.2 4.2 34 67-100 52-85 (128)
126 TIGR02666 moaA molybdenum cofa 40.0 2.5E+02 0.0054 24.7 9.1 137 72-217 42-198 (334)
127 KOG0524|consensus 39.2 34 0.00074 29.7 3.2 50 52-101 158-208 (359)
128 KOG2499|consensus 38.9 28 0.00062 32.6 2.8 23 72-94 246-268 (542)
129 PRK06015 keto-hydroxyglutarate 38.1 94 0.002 25.6 5.6 28 66-93 6-33 (201)
130 cd07033 TPP_PYR_DXS_TK_like Py 37.6 56 0.0012 25.4 4.1 28 185-212 126-153 (156)
131 TIGR03822 AblA_like_2 lysine-2 37.5 1.3E+02 0.0029 26.5 6.9 130 74-208 120-260 (321)
132 PF10740 DUF2529: Protein of u 36.9 94 0.002 25.0 5.2 68 69-139 87-155 (172)
133 PRK00286 xseA exodeoxyribonucl 36.1 38 0.00082 31.3 3.3 34 66-99 163-204 (438)
134 PF13986 DUF4224: Domain of un 35.9 50 0.0011 20.4 2.8 21 79-99 18-38 (47)
135 PRK05583 ribosomal protein L7A 35.9 70 0.0015 23.4 4.1 64 26-97 2-67 (104)
136 TIGR02717 AcCoA-syn-alpha acet 35.1 1.6E+02 0.0035 27.3 7.3 83 131-218 10-101 (447)
137 smart00861 Transket_pyr Transk 34.8 69 0.0015 25.0 4.2 33 63-95 129-163 (168)
138 TIGR02963 xanthine_xdhA xanthi 34.2 69 0.0015 30.0 4.7 54 182-239 191-246 (467)
139 PF10087 DUF2325: Uncharacteri 34.1 1.7E+02 0.0036 20.6 6.0 68 138-213 10-82 (97)
140 cd04906 ACT_ThrD-I_1 First of 33.9 1E+02 0.0022 21.2 4.5 33 63-95 39-72 (85)
141 COG2144 Selenophosphate synthe 33.8 39 0.00085 29.6 2.7 40 57-96 249-289 (324)
142 cd07241 Glo_EDI_BRP_like_3 Thi 33.6 67 0.0015 22.8 3.8 49 185-233 74-124 (125)
143 PRK06683 hypothetical protein; 33.6 67 0.0014 22.4 3.5 37 63-99 25-63 (82)
144 TIGR03195 4hydrxCoA_B 4-hydrox 33.5 68 0.0015 28.5 4.3 52 183-238 4-57 (321)
145 PRK09971 xanthine dehydrogenas 33.1 60 0.0013 28.3 3.9 51 185-239 6-58 (291)
146 cd07241 Glo_EDI_BRP_like_3 Thi 33.1 88 0.0019 22.2 4.4 28 67-94 73-100 (125)
147 PF02603 Hpr_kinase_N: HPr Ser 32.6 52 0.0011 24.8 3.0 35 62-96 78-112 (127)
148 PF09413 DUF2007: Domain of un 32.6 1.2E+02 0.0027 19.6 4.6 34 69-102 3-36 (67)
149 PF05889 SLA_LP_auto_ag: Solub 32.3 28 0.0006 31.8 1.7 27 187-213 166-192 (389)
150 PF12694 MoCo_carrier: Putativ 31.9 64 0.0014 25.2 3.4 34 62-95 88-121 (145)
151 PF02603 Hpr_kinase_N: HPr Ser 31.7 43 0.00092 25.3 2.4 34 179-212 78-111 (127)
152 cd04795 SIS SIS domain. SIS (S 31.7 75 0.0016 21.3 3.6 29 67-95 52-80 (87)
153 PF15608 PELOTA_1: PELOTA RNA 31.5 73 0.0016 23.2 3.5 36 180-215 53-89 (100)
154 PF02779 Transket_pyr: Transke 31.4 74 0.0016 25.3 3.9 33 181-213 135-170 (178)
155 COG1519 KdtA 3-deoxy-D-manno-o 31.3 1.6E+02 0.0036 27.2 6.4 35 64-98 259-293 (419)
156 PF12694 MoCo_carrier: Putativ 31.0 71 0.0015 25.0 3.5 35 180-214 89-123 (145)
157 PF01983 CofC: Guanylyl transf 30.6 13 0.00027 31.2 -0.7 36 66-101 89-130 (217)
158 cd07766 DHQ_Fe-ADH Dehydroquin 30.5 2.6E+02 0.0057 24.4 7.6 22 191-212 89-110 (332)
159 PLN02683 pyruvate dehydrogenas 30.1 75 0.0016 28.6 4.1 33 63-95 161-194 (356)
160 COG1154 Dxs Deoxyxylulose-5-ph 29.9 77 0.0017 30.7 4.2 84 62-152 437-528 (627)
161 PF13611 Peptidase_S76: Serine 29.8 94 0.002 23.5 3.9 54 66-128 27-81 (121)
162 cd06388 PBP1_iGluR_AMPA_GluR4 29.7 1.4E+02 0.003 26.8 5.8 137 63-209 61-205 (371)
163 PRK14467 ribosomal RNA large s 29.5 4.2E+02 0.0091 23.8 9.3 37 183-219 295-332 (348)
164 PF01113 DapB_N: Dihydrodipico 29.1 60 0.0013 24.2 2.9 37 181-217 66-102 (124)
165 PF02601 Exonuc_VII_L: Exonucl 28.7 66 0.0014 28.2 3.5 29 190-218 55-89 (319)
166 PF13611 Peptidase_S76: Serine 28.5 99 0.0021 23.4 3.8 50 186-244 30-80 (121)
167 cd05014 SIS_Kpsf KpsF-like pro 28.5 1.1E+02 0.0023 22.4 4.2 35 184-218 52-86 (128)
168 cd06338 PBP1_ABC_ligand_bindin 28.4 3.9E+02 0.0084 23.0 9.2 137 64-212 70-226 (345)
169 smart00642 Aamy Alpha-amylase 28.3 72 0.0016 25.2 3.3 22 73-94 67-88 (166)
170 PRK06091 membrane protein FdrA 28.2 5.5E+02 0.012 24.8 10.4 89 132-220 198-293 (555)
171 PRK07714 hypothetical protein; 28.1 83 0.0018 22.6 3.4 34 63-96 32-67 (100)
172 KOG3282|consensus 27.7 1.2E+02 0.0026 24.7 4.3 32 180-211 122-153 (190)
173 PF09970 DUF2204: Nucleotidyl 27.3 3E+02 0.0066 22.1 6.8 91 140-239 5-97 (181)
174 PF01212 Beta_elim_lyase: Beta 27.3 55 0.0012 28.5 2.7 27 72-98 141-167 (290)
175 PRK04175 rpl7ae 50S ribosomal 27.2 88 0.0019 23.5 3.4 39 63-101 44-85 (122)
176 TIGR00441 gmhA phosphoheptose 26.8 1.1E+02 0.0023 23.7 4.0 32 67-98 84-115 (154)
177 COG1570 XseA Exonuclease VII, 26.6 60 0.0013 30.2 2.8 35 66-100 163-206 (440)
178 PRK13575 3-dehydroquinate dehy 26.5 1.2E+02 0.0026 25.6 4.5 36 181-216 157-196 (238)
179 cd05710 SIS_1 A subgroup of th 26.4 1.3E+02 0.0027 22.1 4.2 31 67-97 52-82 (120)
180 COG0439 AccC Biotin carboxylas 26.2 81 0.0018 29.5 3.7 130 78-213 14-159 (449)
181 cd06332 PBP1_aromatic_compound 26.2 3.8E+02 0.0082 22.8 7.8 35 65-99 65-99 (333)
182 KOG0369|consensus 26.1 80 0.0017 31.2 3.6 92 120-213 96-191 (1176)
183 PRK09417 mogA molybdenum cofac 25.9 1.4E+02 0.003 24.4 4.7 37 184-220 43-80 (193)
184 TIGR01161 purK phosphoribosyla 25.7 3.2E+02 0.007 24.1 7.4 74 80-154 13-86 (352)
185 COG2896 MoaA Molybdenum cofact 25.6 3E+02 0.0066 24.5 7.0 140 68-218 34-197 (322)
186 TIGR00237 xseA exodeoxyribonuc 25.1 62 0.0013 30.0 2.7 35 67-101 158-201 (432)
187 PRK09212 pyruvate dehydrogenas 25.1 1.1E+02 0.0023 27.2 4.1 87 62-152 137-228 (327)
188 PF09673 TrbC_Ftype: Type-F co 25.1 97 0.0021 22.9 3.3 24 75-98 10-33 (113)
189 PF03614 Flag1_repress: Repres 24.8 83 0.0018 24.7 2.9 34 69-102 9-43 (165)
190 COG4770 Acetyl/propionyl-CoA c 24.2 1.6E+02 0.0034 28.5 5.1 71 140-213 88-159 (645)
191 TIGR03531 selenium_SpcS O-phos 24.1 1.3E+02 0.0029 28.0 4.7 28 74-101 220-250 (444)
192 PRK06256 biotin synthase; Vali 23.9 4.9E+02 0.011 22.8 8.5 131 72-212 90-235 (336)
193 cd08175 G1PDH Glycerol-1-phosp 23.7 4.3E+02 0.0094 23.3 7.8 29 182-212 80-110 (348)
194 PF05889 SLA_LP_auto_ag: Solub 23.6 58 0.0013 29.8 2.1 26 71-96 167-192 (389)
195 PRK04322 peptidyl-tRNA hydrola 23.5 1.9E+02 0.0041 21.5 4.6 38 180-217 45-83 (113)
196 PRK13575 3-dehydroquinate dehy 23.5 1.5E+02 0.0032 25.1 4.5 35 65-99 158-196 (238)
197 cd07036 TPP_PYR_E1-PDHc-beta_l 23.4 1.4E+02 0.003 23.7 4.1 29 184-212 136-164 (167)
198 cd05017 SIS_PGI_PMI_1 The memb 23.3 1.5E+02 0.0032 21.7 4.0 35 67-101 48-82 (119)
199 PF01113 DapB_N: Dihydrodipico 23.2 1.1E+02 0.0024 22.8 3.3 34 66-99 68-101 (124)
200 cd06167 LabA_like LabA_like pr 23.0 1.5E+02 0.0032 22.4 4.1 78 139-217 53-134 (149)
201 PF00128 Alpha-amylase: Alpha 22.8 74 0.0016 26.9 2.6 22 73-94 49-70 (316)
202 PF07287 DUF1446: Protein of u 22.6 1.1E+02 0.0025 27.6 3.8 34 70-103 52-85 (362)
203 COG1880 CdhB CO dehydrogenase/ 22.6 1.4E+02 0.003 23.8 3.7 36 63-98 35-72 (170)
204 CHL00144 odpB pyruvate dehydro 22.5 1.3E+02 0.0028 26.7 4.1 34 62-95 137-171 (327)
205 PF09383 NIL: NIL domain; Int 22.4 1.4E+02 0.0031 19.9 3.5 27 68-94 49-75 (76)
206 PRK09417 mogA molybdenum cofac 22.3 1.7E+02 0.0036 23.9 4.5 34 68-101 44-78 (193)
207 COG2008 GLY1 Threonine aldolas 22.3 80 0.0017 28.3 2.7 25 74-98 148-172 (342)
208 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.3 1.6E+02 0.0035 21.3 4.1 30 69-98 53-82 (126)
209 COG0710 AroD 3-dehydroquinate 22.2 1.5E+02 0.0032 25.1 4.2 36 64-99 148-186 (231)
210 KOG1342|consensus 22.2 98 0.0021 28.2 3.2 25 74-98 276-300 (425)
211 PF01487 DHquinase_I: Type I 3 21.9 80 0.0017 26.1 2.6 36 64-99 145-184 (224)
212 PF00543 P-II: Nitrogen regula 21.8 94 0.002 22.2 2.6 35 67-101 2-37 (102)
213 TIGR00514 accC acetyl-CoA carb 21.5 3E+02 0.0064 25.4 6.5 23 75-97 11-33 (449)
214 COG1570 XseA Exonuclease VII, 21.4 93 0.002 28.9 3.0 132 65-217 53-206 (440)
215 PF02844 GARS_N: Phosphoribosy 21.4 84 0.0018 22.9 2.2 29 71-99 44-72 (100)
216 PRK02412 aroD 3-dehydroquinate 21.4 1.7E+02 0.0037 24.8 4.5 36 182-217 168-208 (253)
217 COG1712 Predicted dinucleotide 21.3 3.5E+02 0.0075 23.1 6.1 82 132-217 4-95 (255)
218 COG1990 pth2 Peptidyl-tRNA hyd 21.1 1.7E+02 0.0036 22.2 3.8 33 62-94 53-85 (122)
219 PRK08462 biotin carboxylase; V 21.0 3.6E+02 0.0079 24.7 7.0 18 78-95 16-33 (445)
220 PF07071 DUF1341: Protein of u 21.0 1.4E+02 0.0031 24.8 3.7 25 73-97 161-185 (218)
221 TIGR03820 lys_2_3_AblA lysine- 21.0 2.1E+02 0.0046 26.5 5.3 77 72-151 137-216 (417)
222 TIGR03677 rpl7ae 50S ribosomal 20.9 1.3E+02 0.0029 22.3 3.3 39 63-101 40-81 (117)
223 PF01380 SIS: SIS domain SIS d 20.8 1.9E+02 0.0041 20.9 4.3 29 69-97 60-88 (131)
224 PRK13361 molybdenum cofactor b 20.6 5.8E+02 0.013 22.4 8.6 134 73-216 45-198 (329)
225 PTZ00182 3-methyl-2-oxobutanat 20.6 1.5E+02 0.0032 26.7 4.1 34 62-95 168-202 (355)
226 COG3962 Acetolactate synthase 20.4 1.3E+02 0.0029 28.4 3.8 33 72-104 213-245 (617)
227 TIGR02667 moaB_proteo molybden 20.4 2.5E+02 0.0055 22.0 5.0 34 68-101 41-75 (163)
228 PRK11892 pyruvate dehydrogenas 20.3 1.3E+02 0.0027 28.3 3.7 43 53-95 266-309 (464)
229 PRK15404 leucine ABC transport 20.2 6.1E+02 0.013 22.4 9.5 144 63-214 90-248 (369)
230 KOG3728|consensus 20.0 1.8E+02 0.004 24.8 4.2 126 76-211 118-247 (308)
231 TIGR00789 flhB_rel flhB C-term 20.0 2E+02 0.0043 20.1 3.8 31 180-211 15-45 (82)
No 1
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=2.1e-24 Score=197.37 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=119.2
Q ss_pred HHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcc
Q psy6765 27 DTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGV 106 (246)
Q Consensus 27 ~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~ 106 (246)
.+++++|++++| +++|++++..+..|++||.. ..+.|.+||+|.|++||+++|++|+++++||++||||||++||++
T Consensus 3 ~~li~~L~~IvG--~~~Vltd~~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAv 79 (564)
T PRK11183 3 KALINELTRIVG--SSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGST 79 (564)
T ss_pred HHHHHHHHHhcC--cccEecCHHHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcc
Confidence 567899999999 78999999999999999864 577899999999999999999999999999999999999999999
Q ss_pred cCCC-----eEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCc
Q psy6765 107 PLYD-----EVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLY 160 (246)
Q Consensus 107 ~~~~-----gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s 160 (246)
|..+ +|||||.+||+|+++| ++.+++|+||+++.+|.++|.++|++++.++++
T Consensus 80 P~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GS 137 (564)
T PRK11183 80 PNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGS 137 (564)
T ss_pred cCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccc
Confidence 9653 7999999999999999 567899999999999999999999988777754
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.91 E-value=5.9e-24 Score=197.42 Aligned_cols=145 Identities=20% Similarity=0.364 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCC
Q psy6765 24 ILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVA 103 (246)
Q Consensus 24 ~~~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g 103 (246)
..+++++++|++++| ...|.++++.+..|++|+...+...|.+|++|+|++||+++|++|+++++||++||+|||++|
T Consensus 16 ~~~~~~~~~l~~~~g--~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~g 93 (499)
T PRK11230 16 VDRTSLLMALREHLP--GLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSG 93 (499)
T ss_pred ccHHHHHHHHHHhcC--cceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCC
Confidence 345678899999999 788999999999999998666788999999999999999999999999999999999999999
Q ss_pred CcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCch-hHHhhHHhh
Q psy6765 104 GGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYD-EVIVSASLM 170 (246)
Q Consensus 104 ~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~-~~~~~~~~~ 170 (246)
+..|..+|++|||++||+|+++|+++++++|+||+++.+|.++|.++|+.++++|++. ..+.++...
T Consensus 94 g~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia 161 (499)
T PRK11230 94 GALPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVA 161 (499)
T ss_pred CcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceec
Confidence 9998778999999999999999999999999999999999999999999999999763 345555543
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.90 E-value=5e-23 Score=192.68 Aligned_cols=146 Identities=20% Similarity=0.194 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHhhCCCCCCeecCccccccccccccccC--CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCC
Q psy6765 25 LNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQ--EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV 102 (246)
Q Consensus 25 ~~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~--~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~ 102 (246)
.+..++++|+++++ + .+.++++.+..|.+||.... ...|.+|++|+|++||+++|++|+++++|++|||||||+.
T Consensus 94 ~~~~~~~~L~~~l~--~-~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~ 170 (555)
T PLN02805 94 VPQELIDELKAILQ--D-NMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIE 170 (555)
T ss_pred chHHHHHHHHHhcC--C-ceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 34667889999998 3 48888888889998874222 3579999999999999999999999999999999999999
Q ss_pred CCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhh
Q psy6765 103 AGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKIL 174 (246)
Q Consensus 103 g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~ 174 (246)
|++++.++|++|||++||+|+++|+++++++|+||+++.+|.++|.++|+.||++|++. .+.++......+
T Consensus 171 G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~-~TIGG~ia~n~~ 241 (555)
T PLN02805 171 GHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPG-ATIGGMCATRCS 241 (555)
T ss_pred CCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccc-cChhhHhhCCCc
Confidence 99887778999999999999999999999999999999999999999999999999864 455665544433
No 4
>KOG1232|consensus
Probab=99.88 E-value=4.4e-23 Score=178.70 Aligned_cols=143 Identities=45% Similarity=0.763 Sum_probs=136.9
Q ss_pred ccccC-cccCCCHHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 16 TVERG-AYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 16 ~~~~~-~~~~~~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
.+.|. .|..++++.+.-+++++| .+.+.++++++..|++||..+++++-..|++|.|++||++|++||+++++.|+|
T Consensus 41 ~v~R~p~fa~l~~~Dl~~Fk~iLg--~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVP 118 (511)
T KOG1232|consen 41 LVQRNPNFAKLDSKDLAYFKSILG--KDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVP 118 (511)
T ss_pred hhhcCCCcccccHHHHHHHHHHhc--ccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEec
Confidence 56788 888999999999999999 677889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCc
Q psy6765 95 QGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLY 160 (246)
Q Consensus 95 ~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s 160 (246)
+||.|++.||++|.-+.|||+|.+||+|+.+|+-.+.++|.+|+++.++.+++.++|+.||-|-+.
T Consensus 119 QGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgA 184 (511)
T KOG1232|consen 119 QGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGA 184 (511)
T ss_pred CCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCC
Confidence 999999999999988899999999999999999999999999999999999999999999988776
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.87 E-value=2.6e-22 Score=184.89 Aligned_cols=139 Identities=29% Similarity=0.429 Sum_probs=125.8
Q ss_pred HHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeE
Q psy6765 33 FKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEV 112 (246)
Q Consensus 33 L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gv 112 (246)
|.++++ ...+.++......|..||+ .....|.+|+.|+|++||+++|++|+++++||+|||+|||++|++.|. +||
T Consensus 2 ~~~~~~--~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gv 77 (459)
T COG0277 2 LKRILG--ELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGV 77 (459)
T ss_pred hhHhcC--ccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcE
Confidence 456677 5667778888888998988 677899999999999999999999999999999999999999999998 799
Q ss_pred EEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCch-hHHhhHHhhhhhhc
Q psy6765 113 IVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYD-EVIVSASLMNKILN 175 (246)
Q Consensus 113 vidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~-~~~~~~~~~~~~~~ 175 (246)
+|||++||+|+++|+++.+++|+||+++.++.++|.++|+.+|.+|++. .++.++......++
T Consensus 78 vl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G 141 (459)
T COG0277 78 VLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGG 141 (459)
T ss_pred EEEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCC
Confidence 9999999999899999999999999999999999999999999999996 77788877665554
No 6
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.82 E-value=1.6e-19 Score=140.61 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=93.7
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHH
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSL 145 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~ 145 (246)
|.+|++|+|++||++++++|+++++|+.++|+||++.+... ..++++|||++||+|+++|+++++++|++|+++.+|.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999986554 46799999999999889999999999999999999999
Q ss_pred HHhhcCceeecCCCc-hhHHhhHHhhhhhh
Q psy6765 146 ELSNTGVVVLGVPLY-DEVIVSASLMNKIL 174 (246)
Q Consensus 146 ~L~~~gl~~~~~p~s-~~~~~~~~~~~~~~ 174 (246)
+|.++|+.++.++.+ ...+.++......+
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~ 109 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGH 109 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-E
T ss_pred ccccccccccccccccccceEchhhcCCCc
Confidence 999999999876665 34455555544443
No 7
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.77 E-value=1.1e-18 Score=159.23 Aligned_cols=102 Identities=24% Similarity=0.395 Sum_probs=93.4
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHh
Q psy6765 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELS 148 (246)
Q Consensus 69 vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~ 148 (246)
||+|+|++||+++|++|+++++|++++|+|||+.|+..+.+++++|||++||+|+++|+++++++|+||+++.+|.++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999999988877899999999999999999999999999999999999999
Q ss_pred hcCceeecCCCch-hHHhhHHhh
Q psy6765 149 NTGVVVLGVPLYD-EVIVSASLM 170 (246)
Q Consensus 149 ~~gl~~~~~p~s~-~~~~~~~~~ 170 (246)
++|+.+|++|++. ..+.++...
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia 103 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIA 103 (413)
T ss_pred HcCCeeCCCCcccccceehhhhh
Confidence 9999999999874 455565543
No 8
>PLN02441 cytokinin dehydrogenase
Probab=99.77 E-value=1.6e-18 Score=160.63 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=108.7
Q ss_pred CCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHH--hCCCcEEEecCCCCCCCCcccCCCeEEEecCCC
Q psy6765 42 NRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCN--EQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLM 119 (246)
Q Consensus 42 ~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~--~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m 119 (246)
..+.+++..+..|++||...+...|.+|++|+|++||+++|++|+ +++++|.+||+||++.|++.+ .+|++|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 557888888999999999888999999999999999999999997 679999999999999988776 46999999999
Q ss_pred CC------ceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCchhHHhhH
Q psy6765 120 NK------ILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSA 167 (246)
Q Consensus 120 ~~------i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~ 167 (246)
|+ ++++|.+..+++|++|++|.++.+++.++|+..+..+.+...+.++
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG 173 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGG 173 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeE
Confidence 99 6788999999999999999999999999998755545443344443
No 9
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.76 E-value=3.9e-18 Score=158.05 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=105.4
Q ss_pred ccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEc
Q psy6765 56 VDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSM 135 (246)
Q Consensus 56 ~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~ 135 (246)
++|++...+.|..+++|+|++||+++|++|++++.+|.++|+|||++|.+.+ ++.+|||++||+|+++|+++++|+|+
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4788888899999999999999999999999999999999999999887664 34589999999999999999999999
Q ss_pred CCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhc
Q psy6765 136 SNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILN 175 (246)
Q Consensus 136 aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~ 175 (246)
+|+++.+|.+.|.++|+.++..++...++.++......|+
T Consensus 130 AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHG 169 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHG 169 (541)
T ss_pred CCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcC
Confidence 9999999999999999999887777777777766655554
No 10
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.74 E-value=1.2e-17 Score=153.03 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=103.2
Q ss_pred ccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEc
Q psy6765 56 VDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSM 135 (246)
Q Consensus 56 ~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~ 135 (246)
++|+..+...|.+|++|+|++||+++|++|+++++||.++|+|||+++.++ .+|++|||++||+|+++|+++++++|+
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 467777788999999999999999999999999999999999999976444 458999999999999999999999999
Q ss_pred CCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhc
Q psy6765 136 SNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILN 175 (246)
Q Consensus 136 aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~ 175 (246)
+|+++.+|.+.|.++|+.++..++....+.++.+....|+
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG 122 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHG 122 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCC
Confidence 9999999999999999999876666656666665555554
No 11
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.73 E-value=2.3e-17 Score=154.52 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=107.2
Q ss_pred cccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCcccC--CCeEEEecCCCCCceeeeC
Q psy6765 51 VKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQG-GNTGVVAGGVPL--YDEVIVSASLMNKILNFDE 127 (246)
Q Consensus 51 ~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~G-gG~~~~g~~~~~--~~gvvidl~~m~~i~~id~ 127 (246)
+..+-++|++.+...|.+|++|+|++||+++|++|+++++||.++| +||++.+...+. ++|++|||++||+|+++|.
T Consensus 17 ~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~ 96 (557)
T TIGR01677 17 VSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDA 96 (557)
T ss_pred eecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeC
Confidence 3445578999999999999999999999999999999999999995 699986655443 2469999999999889999
Q ss_pred CCCeEEEcCCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhc
Q psy6765 128 LSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILN 175 (246)
Q Consensus 128 ~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~ 175 (246)
++++|+|++|+++.+|.+.|.++|+.++..|.....+.++......|+
T Consensus 97 ~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthG 144 (557)
T TIGR01677 97 TAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHG 144 (557)
T ss_pred CCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCC
Confidence 999999999999999999999999999998877666677666544443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.68 E-value=2.9e-16 Score=146.77 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=104.1
Q ss_pred ccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEc
Q psy6765 56 VDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSM 135 (246)
Q Consensus 56 ~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~ 135 (246)
++|++...+.|.++++|+|++||+++|++|+++++||.++|+||++++-+.. + +.+|||++||+|+++|++.++|+|+
T Consensus 87 ~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t-d-~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 87 SNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS-R-EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC-C-CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4788888999999999999999999999999999999999999999765553 3 4578999999999999999999999
Q ss_pred CCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhcc
Q psy6765 136 SNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNF 176 (246)
Q Consensus 136 aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~ 176 (246)
+|+++.+|.+.|.++|+.++..++....+.++......|+.
T Consensus 165 AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGt 205 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGT 205 (573)
T ss_pred cCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCc
Confidence 99999999999999999999877776666777665555553
No 13
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.68 E-value=1.4e-16 Score=145.57 Aligned_cols=114 Identities=12% Similarity=0.201 Sum_probs=97.6
Q ss_pred ccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEc
Q psy6765 56 VDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSM 135 (246)
Q Consensus 56 ~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~ 135 (246)
++|+......|.+|++|+|++||+++|++|++ ||.++|+|||+.+... .+|++|||++||+|+++|+++++++|+
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 36777778899999999999999999999974 7999999999965433 458999999999999999999999999
Q ss_pred CCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhh
Q psy6765 136 SNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKIL 174 (246)
Q Consensus 136 aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~ 174 (246)
+|+++.++.+.|.++|+.+|..|+....+.++......|
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~h 115 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATH 115 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCC
Confidence 999999999999999999987777766666665544333
No 14
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=6.4e-16 Score=135.38 Aligned_cols=122 Identities=18% Similarity=0.354 Sum_probs=101.8
Q ss_pred HHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcc
Q psy6765 27 DTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGV 106 (246)
Q Consensus 27 ~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~ 106 (246)
.+++++|++.++ ...+..+ +++..|+ +.+.++.+.++++|+|++||++++++|+++++|+.++|+|||+ ++
T Consensus 4 ~~~~~~l~~~~~--~~~v~~~-~~L~~~t---t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNl---l~ 74 (307)
T PRK13906 4 KDIYQALQQLIP--NEKIKVD-EPLKRYT---YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNI---II 74 (307)
T ss_pred HHHHHHHHHhcC--CCeeecC-Cccccce---EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeE---ee
Confidence 457889999987 4456654 6788888 4567899999999999999999999999999999999999999 45
Q ss_pred cCCC--eEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 107 PLYD--EVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 107 ~~~~--gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
++++ |++|++++|++| +++. .++++++|+.+.+|.+++.++|+ .+...|++
T Consensus 75 ~d~g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGt 131 (307)
T PRK13906 75 REGGIRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGS 131 (307)
T ss_pred cCCCcceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCcc
Confidence 4443 899999889997 6653 58999999999999999999988 33356664
No 15
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=8.8e-16 Score=134.22 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=102.1
Q ss_pred CHHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc
Q psy6765 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG 105 (246)
Q Consensus 26 ~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~ 105 (246)
..+++++|++.++ .. +..++++..|+ +.++++.|.++++|+|++||++++++|+++++|++++|+|||+ +
T Consensus 3 ~~~~~~~~~~~~~--~~--~~~~~~l~~~t---t~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNl---l 72 (302)
T PRK14652 3 EATWRDEIARRVR--GE--VLRDAPLAPRT---AVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANT---L 72 (302)
T ss_pred hHHHHHHHHHhhc--cc--cccCCCccccc---EeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcce---e
Confidence 4578899999888 33 44556789998 6789999999999999999999999999999999999999999 6
Q ss_pred ccCCC--eEEEecCC-CCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 106 VPLYD--EVIVSASL-MNKILNFDELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 106 ~~~~~--gvvidl~~-m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
+++++ |++|++++ ++.+ .. ++.+++|++|+.+.+|.+++.++|+ ++...|++
T Consensus 73 v~d~g~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGT 131 (302)
T PRK14652 73 VADAGVRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGT 131 (302)
T ss_pred ecCCCEeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCcc
Confidence 66655 89999977 4444 43 3568999999999999999999998 55666663
No 16
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=8.1e-16 Score=134.67 Aligned_cols=120 Identities=17% Similarity=0.254 Sum_probs=98.6
Q ss_pred HHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccC
Q psy6765 29 HIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL 108 (246)
Q Consensus 29 ~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~ 108 (246)
++++|++.++ ...+..+ +.+..|++ .++++.|.++++|.|++||++++++|+++++|++++|+|||+ ++++
T Consensus 6 ~~~~l~~~l~--~~~~~~~-~~l~~~tt---~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNl---l~~d 76 (305)
T PRK12436 6 VYEYLSTVLP--EGHVKQD-EMLKNHTH---IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNV---IIKD 76 (305)
T ss_pred HHHHHHHhcC--cCceecC-CcchhccC---cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEE---EEeC
Confidence 4677888886 4445444 57888873 467889999999999999999999999999999999999999 5555
Q ss_pred CC--eEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCce---e-ecCCCc
Q psy6765 109 YD--EVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVV---V-LGVPLY 160 (246)
Q Consensus 109 ~~--gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~---~-~~~p~s 160 (246)
.+ |++|+|++|++| +++ +.+++|++|+.+.+|.+++.++|+. + ...|++
T Consensus 77 ~g~~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGt 131 (305)
T PRK12436 77 GGIRGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGS 131 (305)
T ss_pred CCeeEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccc
Confidence 44 899999889987 665 4589999999999999999998773 3 346665
No 17
>KOG1231|consensus
Probab=99.61 E-value=3.7e-15 Score=132.41 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=107.0
Q ss_pred HHHHhhCCC-CCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhC--CCcEEEecCCCCCCCCcccC
Q psy6765 32 KFKQILSND-DNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQ--KIAVCPQGGNTGVVAGGVPL 108 (246)
Q Consensus 32 ~L~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~--~i~v~~~GgG~~~~g~~~~~ 108 (246)
.+.++||.+ ...+.+++....+.++||..+..-.|.+|+.|+|++||++++|+|+.. .+||++||+|||+.|++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~ 108 (505)
T KOG1231|consen 29 SLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT 108 (505)
T ss_pred chhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC
Confidence 345556521 123444555566777888888888999999999999999999999999 89999999999999999987
Q ss_pred CCeEEEecC---CCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc--eeecCCCc
Q psy6765 109 YDEVIVSAS---LMNKILNFDELSGNVNSMSNALVTNRSLELSNTGV--VVLGVPLY 160 (246)
Q Consensus 109 ~~gvvidl~---~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl--~~~~~p~s 160 (246)
.+|++|.|+ .|+++-.+..++..+.|.+|..|-++++++.++|+ +++.||.+
T Consensus 109 ~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~ 165 (505)
T KOG1231|consen 109 RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP 165 (505)
T ss_pred CCCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc
Confidence 888765543 57777677778899999999999999999999999 99999988
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.59 E-value=6.3e-15 Score=127.95 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=86.6
Q ss_pred cccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccC--CCeEEEecCCCCCceeeeCCCCeEEEcC
Q psy6765 59 LKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL--YDEVIVSASLMNKILNFDELSGNVNSMS 136 (246)
Q Consensus 59 ~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~--~~gvvidl~~m~~i~~id~~~~~v~v~a 136 (246)
+.++++.|.++++|+|++||++++++|+++++|++++|+|||+. .++ .+|++|++.+|+++ .+++ +.+++|++
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll---~~d~~~~gvvi~l~~~~~~-~~~~-~~~v~v~a 80 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLL---ILDDGRGGVIINLGKGIDI-EDDE-GEYVHVGG 80 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEE---EccCCcCeEEEECCCCceE-EEec-CCEEEEEc
Confidence 46789999999999999999999999999999999999999994 444 35899999999987 5565 56899999
Q ss_pred CccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 137 NALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 137 G~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
|+.+.+|.+++.++|+ +++..|++
T Consensus 81 G~~~~~l~~~~~~~Gl~GlE~l~giPGt 108 (284)
T TIGR00179 81 GENWHKLVKYALKNGLSGLEFLAGIPGT 108 (284)
T ss_pred CCcHHHHHHHHHHCCCcccccCCCCCch
Confidence 9999999999999999 88888885
No 19
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.58 E-value=1.1e-14 Score=127.54 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=90.2
Q ss_pred cCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC--CeEEEecCC-CCCc
Q psy6765 46 TDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY--DEVIVSASL-MNKI 122 (246)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~--~gvvidl~~-m~~i 122 (246)
..+.++..|+ +.+.++.|.++++|+|++||++++++|+++++|+.++|+|||+ ..++. +|++|+|++ |+.|
T Consensus 14 ~~~~~l~~~~---t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnl---l~~d~g~~gvvI~l~~~l~~i 87 (298)
T PRK13905 14 LENEPLARYT---SFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNL---LVRDGGIRGVVIRLGKGLNEI 87 (298)
T ss_pred ecCCCccccc---eeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceE---EecCCCcceEEEEecCCcceE
Confidence 3455788887 5688999999999999999999999999999999999999998 44444 389999998 9987
Q ss_pred eeeeCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 123 LNFDELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 123 ~~id~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
++ ++.+++|++|+.+.+|.+++.++|+ .++..|++
T Consensus 88 -~~--~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipGT 126 (298)
T PRK13905 88 -EV--EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPGT 126 (298)
T ss_pred -Ee--cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCcc
Confidence 44 4568999999999999999999987 45566654
No 20
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.52 E-value=2.7e-14 Score=131.42 Aligned_cols=67 Identities=27% Similarity=0.325 Sum_probs=62.0
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC-----cEEEEcCCcCcceeccCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD-----EVIVSASLMNKILNFDEL 245 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~-----gv~idl~~m~~i~~~d~~ 245 (246)
....|.+||+|.|++||+++|++|+++++||+|||||||++|++.|..+ +|+|||++||+|+++|.+
T Consensus 35 ~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID~~ 106 (564)
T PRK11183 35 GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLNNG 106 (564)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEECCC
Confidence 4568999999999999999999999999999999999999999998643 799999999999999954
No 21
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.51 E-value=9.5e-14 Score=123.59 Aligned_cols=99 Identities=10% Similarity=0.137 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCce
Q psy6765 74 TTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVV 153 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~ 153 (246)
..+||+++|++|+++++|+.|+|+||+..++. +. ++++|||++||+|+++|+++++++|++|+++.+|.++|.++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 47999999999999999999999998544444 33 46799999999999999999999999999999999999999999
Q ss_pred eecCCCc-h-hHHhhHHhhhhhh
Q psy6765 154 VLGVPLY-D-EVIVSASLMNKIL 174 (246)
Q Consensus 154 ~~~~p~s-~-~~~~~~~~~~~~~ 174 (246)
+|.+|.. . ..+.++......+
T Consensus 81 lp~~p~~~~~~~TIGG~iatg~~ 103 (352)
T PRK11282 81 LPFEPPHFGGGATLGGMVAAGLS 103 (352)
T ss_pred eCCCCCCcCCCcEehhHHhcCCC
Confidence 9887643 2 2455665544333
No 22
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.46 E-value=6.5e-13 Score=115.69 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=98.4
Q ss_pred CHHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc
Q psy6765 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG 105 (246)
Q Consensus 26 ~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~ 105 (246)
+.++++.|-+-.+ -+..++++..|+ +.++++.+.+++.|+|++|+++++++|++ ++|+.+.|+|||+ +
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~L~~~t---t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNl---L 69 (297)
T PRK14653 2 TRKIIETLLKYGN-----DVFINEEMKCHV---SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNV---L 69 (297)
T ss_pred chHHHHHHHHhcC-----eeccCCcccccC---EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeE---E
Confidence 3456666655544 144567889998 67899999999999999999999999999 9999999999999 5
Q ss_pred ccCCC--eEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 106 VPLYD--EVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 106 ~~~~~--gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
+++.+ |+||.+.+|++| +++. ..+++++|+.+.+|..++.++|+ ++.+.|++
T Consensus 70 v~d~g~~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT 127 (297)
T PRK14653 70 PKDEPMDFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS 127 (297)
T ss_pred EecCCccEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh
Confidence 55543 899999789997 7763 57999999999999999999988 24445665
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.44 E-value=7.7e-13 Score=118.00 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=91.1
Q ss_pred CccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--eEEEecCCCCCcee
Q psy6765 47 DEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASLMNKILN 124 (246)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~--gvvidl~~m~~i~~ 124 (246)
.+.++..|+ ++++++.|.+++.|+|++|+++++++|+++++|+.++|+|||+ ++++++ |+||+++ ++.+ +
T Consensus 17 ~~~~L~~~t---t~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl---Lv~D~g~~GvVI~l~-~~~i-~ 88 (363)
T PRK13903 17 EDVPLAPLT---TLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL---VIADDGFDGTVVRVA-TRGV-T 88 (363)
T ss_pred CCCCccccc---EeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE---eECCCCccEEEEEeC-CCcE-E
Confidence 445788888 6788999999999999999999999999999999999999999 777654 8999987 5786 6
Q ss_pred eeCCCCeEEEcCCccHHHHHHHHhhcCce----eecCCCc
Q psy6765 125 FDELSGNVNSMSNALVTNRSLELSNTGVV----VLGVPLY 160 (246)
Q Consensus 125 id~~~~~v~v~aG~~~~~l~~~L~~~gl~----~~~~p~s 160 (246)
+++++.++++++|+.|.+|..++.++|+. +...|++
T Consensus 89 i~~~~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGT 128 (363)
T PRK13903 89 VDCGGGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGS 128 (363)
T ss_pred EeCCCCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcc
Confidence 77666789999999999999999998874 3456655
No 24
>KOG4730|consensus
Probab=99.44 E-value=1.6e-13 Score=122.09 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=102.5
Q ss_pred cCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccH
Q psy6765 61 TQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALV 140 (246)
Q Consensus 61 ~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~ 140 (246)
+..++++-|-+|+|++|+.++|+.|++++.++.+.|.||+..+-.+ .+|.+|++++||+++++|++.++++|++|+++
T Consensus 45 r~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 45 RSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 4456778899999999999999999999999999999999976444 34699999999999999999999999999999
Q ss_pred HHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccc
Q psy6765 141 TNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFD 177 (246)
Q Consensus 141 ~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~ 177 (246)
.+|.+++.+.|+.+|..|..+..++++-+-+..|+..
T Consensus 123 rQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS 159 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSS 159 (518)
T ss_pred HHHHHHHHhcCccccCCCceecceeeeEEecccCCCc
Confidence 9999999999999999999998888887766666533
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.43 E-value=6.5e-13 Score=115.87 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=88.6
Q ss_pred ccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC--CeEEEecCCCC-Ccee
Q psy6765 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY--DEVIVSASLMN-KILN 124 (246)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~--~gvvidl~~m~-~i~~ 124 (246)
++++..|+ +.++++.+..+++|+|++|+++++++|+++++|+.++|+|||+ ++++. +|+||++++++ ++ .
T Consensus 6 ~~~L~~~t---t~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNl---L~~d~g~~GvVI~l~~~~~~i-~ 78 (295)
T PRK14649 6 NEPLAPYT---SWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNL---LVRDEGFDGLVARYRGQRWEL-H 78 (295)
T ss_pred CCcccccc---EeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeE---EEeCCCcCeEEEEecCCCcEE-E
Confidence 45678887 6789999999999999999999999999999999999999999 67665 38999998754 55 4
Q ss_pred eeCCCCeEEEcCCccHHHHHHHHhhcCce----eecCCC
Q psy6765 125 FDELSGNVNSMSNALVTNRSLELSNTGVV----VLGVPL 159 (246)
Q Consensus 125 id~~~~~v~v~aG~~~~~l~~~L~~~gl~----~~~~p~ 159 (246)
.+.++.++++++|+.|.++..++.++|+. +...|+
T Consensus 79 ~~~~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG 117 (295)
T PRK14649 79 EHGDTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG 117 (295)
T ss_pred EeCCcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc
Confidence 55555589999999999999999998873 344555
No 26
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.42 E-value=4.3e-13 Score=104.29 Aligned_cols=63 Identities=29% Similarity=0.478 Sum_probs=57.5
Q ss_pred cceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 183 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 183 p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
|.+|++|++++||++++++|++++++|.++|+||++.+... ..++++|||++||+|+++|+++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~ 63 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPEN 63 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTT
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccc
Confidence 78999999999999999999999999999999999985554 4678999999999999999853
No 27
>KOG1233|consensus
Probab=99.42 E-value=5.6e-13 Score=116.69 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=98.6
Q ss_pred ccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC---e-EEEecCCCCCceeeeCCCCeEE
Q psy6765 58 WLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD---E-VIVSASLMNKILNFDELSGNVN 133 (246)
Q Consensus 58 ~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~---g-vvidl~~m~~i~~id~~~~~v~ 133 (246)
|-..+...|+.||-|++.+||.++|+.|.+|++-++|.||||+.++++.+... . +-+|++.||+|+.+|.++.++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 34567789999999999999999999999999999999999999988865443 2 4488899999999999999999
Q ss_pred EcCCccHHHHHHHHhhcCceeecCCCc-hhHHhhHHhhhh
Q psy6765 134 SMSNALVTNRSLELSNTGVVVLGVPLY-DEVIVSASLMNK 172 (246)
Q Consensus 134 v~aG~~~~~l~~~L~~~gl~~~~~p~s-~~~~~~~~~~~~ 172 (246)
+++|+.-.+|...|.+.|+...+.|.+ +.++.+++-.++
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTR 272 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTR 272 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeec
Confidence 999999999999999999999999998 444444443333
No 28
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.40 E-value=7.4e-13 Score=123.41 Aligned_cols=68 Identities=29% Similarity=0.589 Sum_probs=63.6
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
+...|.+|++|.|++||+++|++|+++++||+|+|+||++.|+..+..+||+|||++||+|+++|+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~ 119 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVG 119 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCC
Confidence 45689999999999999999999999999999999999999988887789999999999999999864
No 29
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.39 E-value=6.6e-13 Score=124.76 Aligned_cols=66 Identities=27% Similarity=0.463 Sum_probs=61.8
Q ss_pred CccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 181 ~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
..|.+|++|+|++||+++|++|+++++|++|+|||||+.|++.+..+||+|||++||+|+++|+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~ 197 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVED 197 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCC
Confidence 469999999999999999999999999999999999999988876779999999999999999864
No 30
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.35 E-value=1.5e-12 Score=120.08 Aligned_cols=68 Identities=41% Similarity=0.611 Sum_probs=63.5
Q ss_pred cccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 178 ~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
.+...|.+|++|.|++||++++++|+++++|++|||+|||++|+..+. +||+|||++||+|+++|+++
T Consensus 27 ~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl~l~~mn~i~~id~~~ 94 (459)
T COG0277 27 VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDPED 94 (459)
T ss_pred hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEEEchhhcchhccCcCC
Confidence 345789999999999999999999999999999999999999999988 79999999999999999764
No 31
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.29 E-value=1.2e-11 Score=107.72 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=93.3
Q ss_pred CCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC---eEEEecCC
Q psy6765 42 NRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD---EVIVSASL 118 (246)
Q Consensus 42 ~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~---gvvidl~~ 118 (246)
.++.+..+++..|+ +.++++.+..++.|+|.+|+.+++++++++++|+.+.|+|||+ ++++++ |+||.+.+
T Consensus 12 ~~~~~~~~~L~~~t---t~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl---Lv~D~g~~~g~vi~~~~ 85 (302)
T PRK14650 12 INIKPQTKNLANYT---TYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI---LINDEEEIDFPIIYTGH 85 (302)
T ss_pred cCCCCCCccccccc---eeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE---EEECCCccceEEEEECC
Confidence 44555667888888 6789999999999999999999999999999999999999999 888764 78898867
Q ss_pred CCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 119 MNKILNFDELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 119 m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
|+.+ +++. ..+++++|+.|.+|..++.++|+ ++...|++
T Consensus 86 ~~~i-~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT 128 (302)
T PRK14650 86 LNKI-EIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT 128 (302)
T ss_pred cCcE-EEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc
Confidence 9887 6653 46999999999999999998877 34556655
No 32
>KOG1233|consensus
Probab=99.29 E-value=6.5e-12 Score=110.07 Aligned_cols=105 Identities=20% Similarity=0.155 Sum_probs=83.2
Q ss_pred EcCCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhc----------cccccCccceEEcCCCHHHHHHHHHHHH
Q psy6765 134 SMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILN----------FDELSGKSKLVLKPKTTEEVSAILRYCN 203 (246)
Q Consensus 134 v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~----------~~~~~~~p~~vv~P~s~~~v~~~v~~a~ 203 (246)
..+.+...++..+|.+..+.|....-. - ..+.|+ ...+...|+.|++|++.+||.++|++|.
T Consensus 110 ~P~~VeNedflh~Lket~isyS~Ea~d------R--l~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~ 181 (613)
T KOG1233|consen 110 APRPVENEDFLHFLKETKISYSNEARD------R--LMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAM 181 (613)
T ss_pred CCCCccchHHHHHHHhccCccchhHHH------H--HHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHh
Confidence 456678889999999877766332211 1 123332 2245689999999999999999999999
Q ss_pred hCCCcEEEecCCCCCCCCcccCCCc----EEEEcCCcCcceeccCCC
Q psy6765 204 EQKIAVCPQGGNTGVVAGGVPLYDE----VIVSASLMNKILNFDELS 246 (246)
Q Consensus 204 ~~~~~~~~~ggG~~~~~~~~~~~~g----v~idl~~m~~i~~~d~~~ 246 (246)
+|++.++|.|||++++++..+.+.. +.+|++.||+|+|+|.++
T Consensus 182 khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreN 228 (613)
T KOG1233|consen 182 KHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDREN 228 (613)
T ss_pred hcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEecccc
Confidence 9999999999999999988876653 788889999999999875
No 33
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.28 E-value=1.7e-11 Score=108.32 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=93.2
Q ss_pred CCeecCccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--eEEEecCCC
Q psy6765 42 NRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASLM 119 (246)
Q Consensus 42 ~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~--gvvidl~~m 119 (246)
.+++..+.++..|+ ++++++.+..++.|+|.+|+.+++++|+++++|+.+.|+|||+ ++++++ |+||.+.+|
T Consensus 9 ~~~~~~~~~La~~t---T~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNl---L~~D~g~~G~VI~l~~~ 82 (354)
T PRK14648 9 RRITRRNVPLAERC---SFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNV---LIADEGVPGLMLSLRRF 82 (354)
T ss_pred heeeecCCCccccc---eeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEE---EEeCCCccEEEEEeCCc
Confidence 34566677888888 6789999999999999999999999999999999999999999 887764 899998779
Q ss_pred CCceee---eCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 120 NKILNF---DELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 120 ~~i~~i---d~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
+.+ ++ +.+...+++++|+.|.+|..++.++|+ .+...|++
T Consensus 83 ~~i-~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGT 129 (354)
T PRK14648 83 RSL-HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGS 129 (354)
T ss_pred Cce-EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcc
Confidence 887 54 222247999999999999999988776 34455554
No 34
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.27 E-value=6.1e-12 Score=114.95 Aligned_cols=61 Identities=38% Similarity=0.704 Sum_probs=57.0
Q ss_pred EEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 186 vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
|++|+|++||+++|++|+++++|++|+|+|||+.|+..+.+++|+|||++||+|+++|+++
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~ 61 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVN 61 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCC
Confidence 6899999999999999999999999999999999888877778999999999999999763
No 35
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=1.1e-10 Score=100.45 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=91.8
Q ss_pred ccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--eEEEecCCCCCceee
Q psy6765 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASLMNKILNF 125 (246)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~--gvvidl~~m~~i~~i 125 (246)
+.++.+|+ ++++++.++.++.|++.+|+.++++++.++++|+.+.|+|+|+ ++.+++ +++|.+.+++.+ ++
T Consensus 6 ~~~L~~~t---tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNl---Lv~d~g~~gvvi~~~~~~~~-~~ 78 (291)
T COG0812 6 NVPLKRYT---TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL---LVRDGGIGGVVIKLGKLNFI-EI 78 (291)
T ss_pred CCccccce---eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceE---EEecCCCceEEEEcccccce-ee
Confidence 45688888 6789999999999999999999999999999999999999999 776654 899999988886 77
Q ss_pred eCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 126 DELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 126 d~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
+.+..++++++|+.|.+|...+.++|+ ++...|++
T Consensus 79 ~~~~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs 117 (291)
T COG0812 79 EGDDGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS 117 (291)
T ss_pred eccCCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc
Confidence 776669999999999999999988776 44556665
No 36
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.17 E-value=1.1e-10 Score=103.01 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=87.0
Q ss_pred ccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC-CeEEEecCCCCCceeee
Q psy6765 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY-DEVIVSASLMNKILNFD 126 (246)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~-~gvvidl~~m~~i~~id 126 (246)
+.++..|+ +.++++.+..++.|+|++|+++++++|+++++|+.+.|+|||+ ++++. .|+||.+ +|+++ +++
T Consensus 6 ~~~L~~~t---t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNl---Lv~D~~~g~vI~~-~~~~~-~~~ 77 (334)
T PRK00046 6 NHSLKPLN---TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNV---LFTEDFDGTVLLN-RIKGI-EVL 77 (334)
T ss_pred CCcccccc---eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEE---EECCCCCEEEEEe-cCCce-EEE
Confidence 34678888 6789999999999999999999999999999999999999999 77652 2888887 48887 662
Q ss_pred -CCC--CeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 127 -ELS--GNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 127 -~~~--~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
.++ ..+++++|+.|.+|...+.++|+ .+...|++
T Consensus 78 ~~~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT 118 (334)
T PRK00046 78 SEDDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGT 118 (334)
T ss_pred ecCCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcc
Confidence 222 27999999999999999988876 44556655
No 37
>KOG1232|consensus
Probab=99.09 E-value=4.1e-11 Score=104.81 Aligned_cols=69 Identities=68% Similarity=1.144 Sum_probs=65.8
Q ss_pred cccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 178 ~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
.+.++...|++|.|+++|++|+++|++..+.++|+||.|++.|++.|.-+.|+++|.+||+|+++|+.+
T Consensus 85 kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevs 153 (511)
T KOG1232|consen 85 KYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVS 153 (511)
T ss_pred hccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhcccccccccc
Confidence 577889999999999999999999999999999999999999999999889999999999999999854
No 38
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.08 E-value=2.6e-10 Score=104.73 Aligned_cols=66 Identities=29% Similarity=0.399 Sum_probs=59.7
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
+...|.+|++|+|++||+++|++|+++++++.++|+|||+++... .+|++|||++||+|+++|+++
T Consensus 11 ~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~ 76 (438)
T TIGR01678 11 YSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEK 76 (438)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCC
Confidence 566899999999999999999999999999999999999976544 468999999999999999863
No 39
>PLN02441 cytokinin dehydrogenase
Probab=99.07 E-value=3.6e-10 Score=105.33 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=58.5
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHH--hCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCc------ceeccCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCN--EQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNK------ILNFDEL 245 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~--~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~------i~~~d~~ 245 (246)
....|.+|++|+|++||+++|++|+ +++++|.++|+|||+.|++.+ .+||+|||++||+ ++++|.+
T Consensus 61 ~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~Ln~i~~~~~ii~vd~~ 134 (525)
T PLN02441 61 VHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSLRGGVRGPPVIVVSGD 134 (525)
T ss_pred cCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCCCCcCccCceEEEcCC
Confidence 4568999999999999999999997 779999999999999987775 4689999999999 5677754
No 40
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.03 E-value=6.3e-10 Score=103.74 Aligned_cols=66 Identities=26% Similarity=0.389 Sum_probs=59.3
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
....|..+++|+|++||+++|+.|++++.+|.|+|+|||+++.+.+ +|.+|||++||+|+++|+++
T Consensus 58 ~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~ 123 (541)
T TIGR01676 58 HEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEK 123 (541)
T ss_pred cccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCC
Confidence 4567999999999999999999999999999999999999886664 34689999999999999864
No 41
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=98.98 E-value=1.5e-09 Score=102.21 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=59.3
Q ss_pred cccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCcccC--CCcEEEEcCCcCcceeccCCC
Q psy6765 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQG-GNTGVVAGGVPL--YDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 178 ~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~g-gG~~~~~~~~~~--~~gv~idl~~m~~i~~~d~~~ 246 (246)
.....|.+|++|+|++||+++|++|++++++|.++| +||++.+...+. ++|++|||++||+|+++|.++
T Consensus 27 ~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~ 98 (557)
T TIGR01677 27 RSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATA 98 (557)
T ss_pred cccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCC
Confidence 456789999999999999999999999999999996 699987654443 246999999999999999863
No 42
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.91 E-value=2.3e-09 Score=94.14 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=58.7
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--cEEEEcCCcCcceecc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASLMNKILNFD 243 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~--gv~idl~~m~~i~~~d 243 (246)
+..|++...++.|+++++|.+++||++++++|+++++|++++|+|||+. ..+.+ |++|+|++|++| +++
T Consensus 25 l~~~tt~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll---~~d~g~~GvvI~l~~l~~i-~~~ 95 (305)
T PRK12436 25 LKNHTHIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI---IKDGGIRGITVSLIHITGV-TVT 95 (305)
T ss_pred chhccCcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE---EeCCCeeEEEEEeCCcCcE-EEe
Confidence 3455656678899999999999999999999999999999999999994 33332 799999989997 665
No 43
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=98.87 E-value=4.2e-09 Score=96.46 Aligned_cols=63 Identities=11% Similarity=0.250 Sum_probs=55.0
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
....|.+|++|+|++||+++|+.|++ ++.++|+|||+.+... .+|++|||++||+|+++|+++
T Consensus 8 ~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~ 70 (419)
T TIGR01679 8 QVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPT 70 (419)
T ss_pred ccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCC
Confidence 45689999999999999999999974 7999999999976543 468999999999999999763
No 44
>KOG1231|consensus
Probab=98.85 E-value=6.9e-09 Score=92.87 Aligned_cols=65 Identities=26% Similarity=0.415 Sum_probs=55.9
Q ss_pred cccCccceEEcCCCHHHHHHHHHHHHhC--CCcEEEecCCCCCCCCcccCCCcEEEEcC---CcCcceec
Q psy6765 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQ--KIAVCPQGGNTGVVAGGVPLYDEVIVSAS---LMNKILNF 242 (246)
Q Consensus 178 ~~~~~p~~vv~P~s~~~v~~~v~~a~~~--~~~~~~~ggG~~~~~~~~~~~~gv~idl~---~m~~i~~~ 242 (246)
.....|.+|+.|.|++||++++|+|+.. ++|++|||+|||+.|++.+..+|++|.|+ .|+++-.+
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~ 128 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVL 128 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCCCCeEEEEehhhccCCCcee
Confidence 5678999999999999999999999999 99999999999999999987889666664 46655333
No 45
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=98.80 E-value=1.1e-08 Score=96.10 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=57.9
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCC
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDEL 245 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~ 245 (246)
....|.+++.|+|++||+++|++|++++++|.++|+|||.++.... ++.+|||++||+|+++|++
T Consensus 93 ~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t--d~glIdL~~l~~Il~vD~e 157 (573)
T PLN02465 93 HEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS--REGMVNLALMDKVLEVDKE 157 (573)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC--CCEEEECcCCCCcEEEeCC
Confidence 4578999999999999999999999999999999999998765553 3457999999999999986
No 46
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=98.79 E-value=8.5e-09 Score=89.68 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=59.0
Q ss_pred hhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccC
Q psy6765 173 ILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244 (246)
Q Consensus 173 ~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~ 244 (246)
.|++...++.|+.+++|+|++||++++++|+++++|++++|||||+..... ..+|++|++++|+.+ .+++
T Consensus 3 ~~tt~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~~~-~~~~ 72 (284)
T TIGR00179 3 EFTTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDD-GRGGVIINLGKGIDI-EDDE 72 (284)
T ss_pred CcceeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccC-CcCeEEEECCCCceE-EEec
Confidence 455567788999999999999999999999999999999999999964332 245899999999987 3444
No 47
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.78 E-value=1.1e-08 Score=89.82 Aligned_cols=69 Identities=19% Similarity=0.415 Sum_probs=58.4
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC--CcEEEEcCCcCcceecc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY--DEVIVSASLMNKILNFD 243 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~--~gv~idl~~m~~i~~~d 243 (246)
+..|++...++.++++++|.+++||++++++|+++++|++++|+|||+. ..+. +|++|++++|++| +++
T Consensus 25 L~~~tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll---~~d~g~~GvvI~l~~l~~i-~~~ 95 (307)
T PRK13906 25 LKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII---IREGGIRGIVISLLSLDHI-EVS 95 (307)
T ss_pred cccceEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe---ecCCCcceEEEEecCccce-EEe
Confidence 3456666778899999999999999999999999999999999999994 2222 2899999889998 554
No 48
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.72 E-value=2.8e-08 Score=87.08 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=56.0
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--cEEEEcCC-cCcc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASL-MNKI 239 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~--gv~idl~~-m~~i 239 (246)
+..|++...++.|+++++|++++||++++++|+++++|++++|||||+ ..++.+ |++|+|++ ++.|
T Consensus 24 l~~~tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNl---lv~d~g~~gvVI~l~~~~~~i 92 (302)
T PRK14652 24 LAPRTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANT---LVADAGVRGVVLRLPQDFPGE 92 (302)
T ss_pred cccccEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcce---eecCCCEeeEEEEecCCcceE
Confidence 456666788999999999999999999999999999999999999999 344333 79999977 4444
No 49
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.72 E-value=1.9e-08 Score=88.13 Aligned_cols=71 Identities=15% Similarity=0.286 Sum_probs=58.2
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCC-cCcceecc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASL-MNKILNFD 243 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~-m~~i~~~d 243 (246)
+..|++...++.|++++.|+|++||++++++|+++++|+.++|+|||+...... -.|++|||++ |++| +++
T Consensus 19 l~~~~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~~ 90 (298)
T PRK13905 19 LARYTSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EVE 90 (298)
T ss_pred ccccceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Eec
Confidence 345566677889999999999999999999999999999999999998422111 1389999998 9997 544
No 50
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.64 E-value=9.9e-08 Score=82.13 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=75.9
Q ss_pred ccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--eEEEecCC-CCCcee
Q psy6765 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASL-MNKILN 124 (246)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~--gvvidl~~-m~~i~~ 124 (246)
+.++..|+ +.++++.+..++ |.|.+|+.+++ ++|+.+.|+|||+ ++++++ |+||.+.+ ++.+ +
T Consensus 6 ~~~L~~~t---t~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNl---L~~D~g~~g~vI~l~~~~~~~-~ 71 (273)
T PRK14651 6 RVPLARYT---TLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNL---LVSDAGVPERVIRLGGEFAEW-D 71 (273)
T ss_pred CCcccccc---EeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEE---EEcCCCcceEEEEECCcceeE-e
Confidence 34678888 678899999999 99999999988 5999999999999 888773 89998865 5554 4
Q ss_pred eeCCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 125 FDELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 125 id~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
++ + ++++|+.|.+|..++.++|+ .+...|++
T Consensus 72 ~~--~---~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT 106 (273)
T PRK14651 72 LD--G---WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ 106 (273)
T ss_pred EC--C---EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc
Confidence 43 2 59999999999999988876 44455554
No 51
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.43 E-value=6.5e-07 Score=76.40 Aligned_cols=93 Identities=6% Similarity=-0.026 Sum_probs=74.5
Q ss_pred ccccccccccccccCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC-eEEEecCCCCCceeee
Q psy6765 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD-EVIVSASLMNKILNFD 126 (246)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~-gvvidl~~m~~i~~id 126 (246)
+.++..|+ +.++++.++.++.|++.+ + ++|+.+.|+|||+ ++++++ +.++-+.+|+.+ +++
T Consensus 4 ~~~L~~~t---t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNl---Lv~D~g~~~vv~~~~~~~~-~~~ 65 (257)
T PRK13904 4 IIDFSKYS---SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNL---LISPNPKNLAILGKNFDYI-KID 65 (257)
T ss_pred CcchhhcC---ceeECceEEEEEEechhh-h----------CCCeEEEeceeEE---EEecCCccEEEEccCcCeE-EEe
Confidence 45678888 678999999999999988 6 8999999999999 887765 444434668886 665
Q ss_pred CCCCeEEEcCCccHHHHHHHHhhcCc----eeecCCCc
Q psy6765 127 ELSGNVNSMSNALVTNRSLELSNTGV----VVLGVPLY 160 (246)
Q Consensus 127 ~~~~~v~v~aG~~~~~l~~~L~~~gl----~~~~~p~s 160 (246)
. .++++++|+.+.+|..++.++|+ ++...|++
T Consensus 66 ~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt 101 (257)
T PRK13904 66 G--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT 101 (257)
T ss_pred C--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc
Confidence 4 47999999999999999998876 44556665
No 52
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.40 E-value=5.5e-07 Score=80.66 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--cEEEEcCCcCcceecc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASLMNKILNFD 243 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~--gv~idl~~m~~i~~~d 243 (246)
+..|++...++.+++++.|.+++|+.+++++|+++++|++++|+|||+ .+.+++ |++|+++ ++.| +++
T Consensus 21 L~~~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl---Lv~D~g~~GvVI~l~-~~~i-~i~ 90 (363)
T PRK13903 21 LAPLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL---VIADDGFDGTVVRVA-TRGV-TVD 90 (363)
T ss_pred cccccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE---eECCCCccEEEEEeC-CCcE-EEe
Confidence 456666788899999999999999999999999999999999999999 454433 7999997 5776 555
No 53
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.35 E-value=7.5e-07 Score=77.91 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=56.2
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC--CcEEEEcCCcC-cc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY--DEVIVSASLMN-KI 239 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~--~gv~idl~~m~-~i 239 (246)
+..|++...++.++.++.|++++|+++++++|+++++|+.++|+|||+ ...+. +|++|++++|+ ++
T Consensus 9 L~~~tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNl---L~~d~g~~GvVI~l~~~~~~i 77 (295)
T PRK14649 9 LAPYTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNL---LVRDEGFDGLVARYRGQRWEL 77 (295)
T ss_pred cccccEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeE---EEeCCCcCeEEEEecCCCcEE
Confidence 456666788999999999999999999999999999999999999999 34333 38999998754 55
No 54
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.27 E-value=1.2e-06 Score=76.49 Aligned_cols=70 Identities=26% Similarity=0.285 Sum_probs=59.3
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceecc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d 243 (246)
+..|++...++.++.++.|.+++|+++++++|++ ++|+++.|+|+|+-..-.+. .|++|.+++|++| +++
T Consensus 22 L~~~tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~-~gvVI~l~~~~~i-~i~ 91 (297)
T PRK14653 22 MKCHVSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM-DFVVVSTERLDDI-FVD 91 (297)
T ss_pred ccccCEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc-cEEEEEeCCcCce-EEe
Confidence 4566777889999999999999999999999999 99999999999995433322 3899999789998 665
No 55
>KOG4730|consensus
Probab=97.95 E-value=1.1e-05 Score=72.70 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=57.1
Q ss_pred CccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccCCC
Q psy6765 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELS 246 (246)
Q Consensus 181 ~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~~~ 246 (246)
.++.-|-+|+|++|+..+|+.|++++.++.+.|.||+..+-.+. +|.+|++++||+++++|+|.
T Consensus 48 c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ct--dg~lisl~~lnkVv~~dpe~ 111 (518)
T KOG4730|consen 48 CKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCT--DGLLISLDKLNKVVEFDPEL 111 (518)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceec--cccEEEhhhhccceeeCchh
Confidence 45667899999999999999999999999999999999875553 46999999999999999874
No 56
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.91 E-value=2e-05 Score=68.96 Aligned_cols=69 Identities=26% Similarity=0.337 Sum_probs=58.7
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC---cEEEEcCCcCcceecc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD---EVIVSASLMNKILNFD 243 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~---gv~idl~~m~~i~~~d 243 (246)
+..|++...++.++.++.|.+.+|++++++++.++++|+.+.|+|+|+ ...+++ |++|.+.+|+.| +++
T Consensus 21 L~~~tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl---Lv~D~g~~~g~vi~~~~~~~i-~~~ 92 (302)
T PRK14650 21 LANYTTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI---LINDEEEIDFPIIYTGHLNKI-EIH 92 (302)
T ss_pred ccccceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE---EEECCCccceEEEEECCcCcE-EEe
Confidence 356677788999999999999999999999999999999999999999 555443 688888668887 554
No 57
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.88 E-value=2e-05 Score=70.06 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=57.1
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC--cEEEEcCCcCcc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD--EVIVSASLMNKI 239 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~--gv~idl~~m~~i 239 (246)
+..|++...++.++.++.|.|.+|+.+++++|.++++|+++.|+|+|+ .+.+++ |++|.+++|+.+
T Consensus 18 La~~tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNl---L~~D~g~~G~VI~l~~~~~i 85 (354)
T PRK14648 18 LAERCSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNV---LIADEGVPGLMLSLRRFRSL 85 (354)
T ss_pred ccccceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEE---EEeCCCccEEEEEeCCcCce
Confidence 345666778899999999999999999999999999999999999999 454432 899999668887
No 58
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=9.9e-05 Score=63.93 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=58.7
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC--CcEEEEcCCcCcceeccC
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY--DEVIVSASLMNKILNFDE 244 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~--~gv~idl~~m~~i~~~d~ 244 (246)
+..|++...++.++.++.|.+.+|+.++++++.++++|+.+.|+|+|+ .+.++ +|++|.+.+++.+ +++.
T Consensus 9 L~~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNl---Lv~d~g~~gvvi~~~~~~~~-~~~~ 80 (291)
T COG0812 9 LKRYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL---LVRDGGIGGVVIKLGKLNFI-EIEG 80 (291)
T ss_pred cccceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceE---EEecCCCceEEEEcccccce-eeec
Confidence 456677788999999999999999999999999999999999999998 34332 3799999988776 4443
No 59
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.64 E-value=7.5e-05 Score=66.28 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=56.1
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccC-CCcEEEEcCCcCcceec
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL-YDEVIVSASLMNKILNF 242 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~-~~gv~idl~~m~~i~~~ 242 (246)
+..|++...++.++.++.|.|++|+++++++|+++++|+++.|+|+|+- +.+ -.|++|.+ +|+.+ .+
T Consensus 9 L~~~tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlL---v~D~~~g~vI~~-~~~~~-~~ 76 (334)
T PRK00046 9 LKPLNTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVL---FTEDFDGTVLLN-RIKGI-EV 76 (334)
T ss_pred ccccceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEE---ECCCCCEEEEEe-cCCce-EE
Confidence 4566667889999999999999999999999999999999999999993 332 23788887 48887 44
No 60
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.42 E-value=0.0054 Score=49.34 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=53.3
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccC---CCeEEEecCCCCCceeeeCCCCeEEEcCCccHHH
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL---YDEVIVSASLMNKILNFDELSGNVNSMSNALVTN 142 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~---~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~ 142 (246)
+.-+++|.|.+|+.++++ ... ...+.+|||.+.- .... ....+||++++.+...|+.++..++++++++..+
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~~~--~a~~vaGgT~l~~-~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--KGP--DARIVAGGTDLGV-QMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--HGT--TEEEESS-TTHHH-HHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh--cCC--CCEEEeCCCccch-hcccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 345789999999999999 222 4788999998721 1111 1258999998766655555678899999999999
Q ss_pred HHHH
Q psy6765 143 RSLE 146 (246)
Q Consensus 143 l~~~ 146 (246)
+.+.
T Consensus 77 l~~~ 80 (171)
T PF00941_consen 77 LEES 80 (171)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9876
No 61
>PRK09799 putative oxidoreductase; Provisional
Probab=96.20 E-value=0.022 Score=48.91 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=54.6
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHH
Q psy6765 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLE 146 (246)
Q Consensus 68 ~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~ 146 (246)
-+..|+|.+|+.++++ +++-...+.+|||.+.-..-.....++||++++ +...+..++..++++++++..++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4678999999998876 343235779999998322111123689999986 65556666778999999999999764
No 62
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.11 E-value=0.0085 Score=51.82 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=47.5
Q ss_pred hhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC--CcEEEEcCC-cCcc
Q psy6765 171 NKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY--DEVIVSASL-MNKI 239 (246)
Q Consensus 171 ~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~--~gv~idl~~-m~~i 239 (246)
+..|++...++.++.++ |.+.+|+.+++ ++|+.+.|+|+|+ .+.++ .|++|.+.+ ++.+
T Consensus 9 L~~~tt~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNl---L~~D~g~~g~vI~l~~~~~~~ 70 (273)
T PRK14651 9 LARYTTLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNL---LVSDAGVPERVIRLGGEFAEW 70 (273)
T ss_pred cccccEeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEE---EEcCCCcceEEEEECCcceeE
Confidence 34566677888999999 99999999988 5899999999999 55554 378888865 6654
No 63
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.76 E-value=0.043 Score=47.12 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=52.1
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHH
Q psy6765 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSL 145 (246)
Q Consensus 69 vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~ 145 (246)
+++|+|.+|+.++++ +++-.-.+.+|||.+.-........++||++++ ....|+.++..+++++.++..++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 678999999998766 343235678999999422211123588999886 5555555667899999999999865
No 64
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.51 E-value=0.14 Score=47.81 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=57.8
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc-cc-CCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHH
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG-VP-LYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNR 143 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~-~~-~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l 143 (246)
..-+++|+|.+|+.++++- +. ...+.+|||.+.-.. .. .....+||++++.++..+..++..++++++++..++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988763 32 357799999983221 11 123689999987665555556678999999999999
Q ss_pred HHHHhh
Q psy6765 144 SLELSN 149 (246)
Q Consensus 144 ~~~L~~ 149 (246)
.+.+.+
T Consensus 268 ~~~l~~ 273 (467)
T TIGR02963 268 YAALAK 273 (467)
T ss_pred HHHHHH
Confidence 876654
No 65
>KOG1262|consensus
Probab=93.68 E-value=0.023 Score=50.96 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=50.0
Q ss_pred EEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCceeecCCCchhHHhhHHh
Q psy6765 112 VIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASL 169 (246)
Q Consensus 112 vvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~ 169 (246)
--|++..|..|+++|.++++++|+|+++..++.++|-+.|+.+|.-|.-+..++|+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLi 161 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLI 161 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceeccee
Confidence 3455666778889999999999999999999999999999999999988777777654
No 66
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=93.08 E-value=0.22 Score=44.17 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=52.1
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccc--CCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHH
Q psy6765 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSL 145 (246)
Q Consensus 68 ~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~--~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~ 145 (246)
-+++|+|.+|..++++- ++ .-.+.+|||.+.-..-. .....+||+.++.++..|+.++..++++++++..++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47889999999988763 32 24579999987322211 11268899988655444555567799999999999865
No 67
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=92.98 E-value=0.32 Score=42.50 Aligned_cols=74 Identities=15% Similarity=0.019 Sum_probs=52.3
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc-cc-CCCeEEEecCCCCCceeee-CCCCeEEEcCCccHHHHH
Q psy6765 68 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG-VP-LYDEVIVSASLMNKILNFD-ELSGNVNSMSNALVTNRS 144 (246)
Q Consensus 68 ~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~-~~-~~~gvvidl~~m~~i~~id-~~~~~v~v~aG~~~~~l~ 144 (246)
-++.|+|.+|..++++- +. ...+.+|||.+.-.. .. .....+||++++.....|. .++..++++++++..++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57889999999988774 22 357799999883211 11 1227899999866554555 234579999999999987
Q ss_pred H
Q psy6765 145 L 145 (246)
Q Consensus 145 ~ 145 (246)
+
T Consensus 82 ~ 82 (291)
T PRK09971 82 E 82 (291)
T ss_pred c
Confidence 5
No 68
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=92.80 E-value=0.19 Score=43.25 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccC---CCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHH
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL---YDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSL 145 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~---~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~ 145 (246)
|.|.+|+.++++-. . ...+.+|||.+.-..... ....+||++++.+...|+.++..+++++++++.++.+
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 78888888888742 2 356789999883322111 1368899998776666666778899999999999974
No 69
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=91.22 E-value=0.23 Score=42.61 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=43.4
Q ss_pred hhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCC-cEEEEcCCcCcceecc
Q psy6765 170 MNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD-EVIVSASLMNKILNFD 243 (246)
Q Consensus 170 ~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~-gv~idl~~m~~i~~~d 243 (246)
.+..|++...++.++.++.|++.+ + ++|+.+.|+|+|+ ...+.+ +.++-++.|+.+ +++
T Consensus 6 ~L~~~tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNl---Lv~D~g~~~vv~~~~~~~~-~~~ 65 (257)
T PRK13904 6 DFSKYSSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNL---LISPNPKNLAILGKNFDYI-KID 65 (257)
T ss_pred chhhcCceeECceEEEEEEechhh-h----------CCCeEEEeceeEE---EEecCCccEEEEccCcCeE-EEe
Confidence 345677778899999999999887 5 8999999999999 454432 344434567776 543
No 70
>PLN02906 xanthine dehydrogenase
Probab=88.34 E-value=1 Score=47.39 Aligned_cols=79 Identities=9% Similarity=0.000 Sum_probs=57.2
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc-cc-CCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHH
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG-VP-LYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRS 144 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~-~~-~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~ 144 (246)
.-+++|.|.+|+.++++-. . ...+.+|||.+.-.. .. ....++||++++..+..|+.++..++++++++..++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4588999999999887642 1 246789999983221 00 1237899999876665566566789999999999998
Q ss_pred HHHhh
Q psy6765 145 LELSN 149 (246)
Q Consensus 145 ~~L~~ 149 (246)
..|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 87544
No 71
>PLN00192 aldehyde oxidase
Probab=87.32 E-value=1.8 Score=45.70 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=58.0
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccC-CCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHH
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL-YDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRS 144 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~-~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~ 144 (246)
..-+++|.|.+|+.++++-....+-...+..|||.+.- .-.. ...++||++++..+..|..++..+++++++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~-~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGY-YKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCccee-eeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 34689999999999887642100123667889999822 1111 126899999876665566566789999999999988
Q ss_pred HHHhhc
Q psy6765 145 LELSNT 150 (246)
Q Consensus 145 ~~L~~~ 150 (246)
+.+...
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 766543
No 72
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=85.90 E-value=2.1 Score=45.20 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=57.7
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc-c-cCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHH
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG-V-PLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRS 144 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~-~-~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~ 144 (246)
.-+++|.|.+|+.++++- +. .-.+.+|||.+.-.. . ......+||++++..+..+..++..++++++++..++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 458899999999988764 22 346789999982211 0 01225799999876665566666789999999999998
Q ss_pred HHHhhc
Q psy6765 145 LELSNT 150 (246)
Q Consensus 145 ~~L~~~ 150 (246)
+.|.+.
T Consensus 313 ~~l~~~ 318 (1330)
T TIGR02969 313 DILADV 318 (1330)
T ss_pred HHHHHh
Confidence 876543
No 73
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=80.42 E-value=4.4 Score=33.54 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=67.0
Q ss_pred CccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccH--HH
Q psy6765 65 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALV--TN 142 (246)
Q Consensus 65 ~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~--~~ 142 (246)
+--.|++-.+.++..++++.+.+.|+++.=.--.+-- .. .+ ++.+.+ ++ ..+.+++|+.. .+
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~---a~----~~---i~~l~~--~~----~~~~vGAGTVl~~~~ 72 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPV---AL----DA---IRLLRK--EV----PDALIGAGTVLNPEQ 72 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCcc---HH----HH---HHHHHH--HC----CCCEEEEEeCCCHHH
Confidence 4467999999999999999999998876543211100 00 00 122222 12 13678888776 33
Q ss_pred HHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEec
Q psy6765 143 RSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQG 213 (246)
Q Consensus 143 l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~g 213 (246)
+. .+...|-.|-..|+.+.. ...+-........| =..|+.|+.+.+++-. .-++++|-+
T Consensus 73 a~-~a~~aGA~FivsP~~~~~------v~~~~~~~~i~~iP----G~~TptEi~~A~~~Ga-~~vKlFPA~ 131 (204)
T TIGR01182 73 LR-QAVDAGAQFIVSPGLTPE------LAKHAQDHGIPIIP----GVATPSEIMLALELGI-TALKLFPAE 131 (204)
T ss_pred HH-HHHHcCCCEEECCCCCHH------HHHHHHHcCCcEEC----CCCCHHHHHHHHHCCC-CEEEECCch
Confidence 43 344578778788887554 22221111121222 2347777777665421 235667743
No 74
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=78.26 E-value=28 Score=32.59 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=74.6
Q ss_pred eCCCHHHHHHHHHHHHhCCCcEEE---ecCC---------CCCCCCccc--------CCCeEEEecCCCCCceeeeCCCC
Q psy6765 71 KPKTTEEVSAILRYCNEQKIAVCP---QGGN---------TGVVAGGVP--------LYDEVIVSASLMNKILNFDELSG 130 (246)
Q Consensus 71 ~P~s~~ev~~~v~~a~~~~i~v~~---~GgG---------~~~~g~~~~--------~~~gvvidl~~m~~i~~id~~~~ 130 (246)
+|-+.+++.++-++|+++|+|++. |.-| .++.+..+. ..+.+++++.+ -.... .++
T Consensus 193 qpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K---~~~~~-~GG 268 (460)
T PRK13237 193 QPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKK---DCLVN-IGG 268 (460)
T ss_pred eeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCC---CCCCC-Cce
Confidence 455678999999999999999987 4333 224333321 22356666433 21222 233
Q ss_pred eEEEcCCccHHHHHHHHhhcCceeecCCCchhHHh-hHHhhhh-hhccccccCccceEEcCCCHHHHHHHHHHHHhCCCc
Q psy6765 131 NVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIV-SASLMNK-ILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIA 208 (246)
Q Consensus 131 ~v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~-~~~~~~~-~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~ 208 (246)
.+... ..++.+.++..-..+++.++|.-.+. +-+-... ..-.-... ..-...++++.+.+...+.|+|
T Consensus 269 ~i~t~----D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~------y~~~ri~~~~~l~~~L~~~Gvp 338 (460)
T PRK13237 269 FLAMN----DEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYE------YIEHRVGQVRYLGEKLLAAGVP 338 (460)
T ss_pred EEEEC----CHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHH------HHHHHHHHHHHHHHHHHHCCCc
Confidence 33332 25777777766666766666643211 1111110 00000000 0012457788888888999999
Q ss_pred EEEecCCCCC
Q psy6765 209 VCPQGGNTGV 218 (246)
Q Consensus 209 ~~~~ggG~~~ 218 (246)
|.--.|||.+
T Consensus 339 v~~p~ggH~v 348 (460)
T PRK13237 339 IVEPVGGHAV 348 (460)
T ss_pred eecCCCceEE
Confidence 9977888876
No 75
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=76.04 E-value=9.7 Score=33.23 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccc--CCCeEEEecCCCCCcee-eeCCCCeEEEcCCccHHH
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSASLMNKILN-FDELSGNVNSMSNALVTN 142 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~--~~~gvvidl~~m~~i~~-id~~~~~v~v~aG~~~~~ 142 (246)
+.-+.+|.|.+|..++++ +++ -..+.+|||++.-..-. ....-+||+.++..... ...++..+++++-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 455789999998888777 444 57889999998421110 12256888888742222 333566799999999998
Q ss_pred HHH
Q psy6765 143 RSL 145 (246)
Q Consensus 143 l~~ 145 (246)
+.+
T Consensus 79 i~~ 81 (284)
T COG1319 79 IAR 81 (284)
T ss_pred HHh
Confidence 863
No 76
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=75.40 E-value=4.5 Score=38.28 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=43.9
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCC-CcEEE-----ecCCCCCCCCcccCCCeEEEec-CCCCCceeeeCCCCeEEEc
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQK-IAVCP-----QGGNTGVVAGGVPLYDEVIVSA-SLMNKILNFDELSGNVNSM 135 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~-i~v~~-----~GgG~~~~g~~~~~~~gvvidl-~~m~~i~~id~~~~~v~v~ 135 (246)
.+.|-.+++|.|.++|..++++|+++- .||+. |+|||.-. . +-+..+|-+ +.+++ .++-++.++
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSw---e-Dld~llL~tYs~lR~-----~~NIvl~vG 219 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSW---E-DLDDLLLATYSELRS-----RDNIVLCVG 219 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccch---h-hcccHHHHHHHHHhc-----CCCEEEEec
Confidence 377889999999999999999999874 67776 45555431 1 111233322 22222 134466777
Q ss_pred CCccHH
Q psy6765 136 SNALVT 141 (246)
Q Consensus 136 aG~~~~ 141 (246)
.|.-..
T Consensus 220 gGiGtp 225 (717)
T COG4981 220 GGIGTP 225 (717)
T ss_pred CCcCCh
Confidence 777553
No 77
>PRK09799 putative oxidoreductase; Provisional
Probab=71.14 E-value=9.1 Score=32.82 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=34.8
Q ss_pred eEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCC--cCcc
Q psy6765 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASL--MNKI 239 (246)
Q Consensus 185 ~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~--m~~i 239 (246)
..+.|+|.+|..++++ +++=.-.+.+|||.+..........++||+++ |+.|
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~ieL~~I 57 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWI 57 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhhCCCCCCEEEEcCCCCCCeE
Confidence 4678999999888765 34323467899999943222223468999986 4444
No 78
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=70.58 E-value=2.7 Score=33.61 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=33.0
Q ss_pred cceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccc--CCCcEEEEcCCcCcc
Q psy6765 183 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSASLMNKI 239 (246)
Q Consensus 183 p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~--~~~gv~idl~~m~~i 239 (246)
+...++|.|.+|..++++ .+-...+.+|||.+....-. .....+||++++..+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL 56 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPEL 56 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGG
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEeccc
Confidence 346789999999999988 33356778899987321111 123599999876444
No 79
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=68.34 E-value=12 Score=32.12 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=32.0
Q ss_pred EEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCc
Q psy6765 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLM 236 (246)
Q Consensus 186 vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m 236 (246)
.+.|+|.+|..++++ +++-.-.+.+|||.+..........++||+++.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i 51 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL 51 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccCCCEEEEcCCC
Confidence 578999998887765 343234567999999533222223589999874
No 80
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=63.08 E-value=12 Score=35.46 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=78.4
Q ss_pred ccccccccCCCCccEEE---eCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEec-----CCCCCceee
Q psy6765 54 YNVDWLKTQEGKSKLVL---KPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA-----SLMNKILNF 125 (246)
Q Consensus 54 ~~~~~~~~~~~~p~~vv---~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl-----~~m~~i~~i 125 (246)
..+.|+.. .++|..++ .|.|.+ .+++..+...|--.-.-|||.-........-.-++.-+ -.+|.| -+
T Consensus 24 v~TkfsrL-tGr~PillaGMTPtTVd--p~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~lepG~t~qfN~i-fl 99 (717)
T COG4981 24 VSTKFSRL-TGRSPILLAGMTPTTVD--PDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSLLEPGRTAQFNSI-FL 99 (717)
T ss_pred Eeechhhh-cCCCCeeecCCCCCcCC--HHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhccCCCccceeeEE-Ee
Confidence 34445544 34444444 366654 45666677777666666666432110000000011111 124554 55
Q ss_pred eCCCCeEEEcCCccHHHHHHHHhhcCcee------ecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHH
Q psy6765 126 DELSGNVNSMSNALVTNRSLELSNTGVVV------LGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAIL 199 (246)
Q Consensus 126 d~~~~~v~v~aG~~~~~l~~~L~~~gl~~------~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v 199 (246)
|+---.. ++-.+.|.+.++..|..+ .+.|+-+.. ..+.......+-|-.+++|.|.++|..++
T Consensus 100 dpylw~~----qig~krLv~kara~G~~I~gvvIsAGIP~le~A-------~ElI~~L~~~G~~yv~fKPGtIeqI~svi 168 (717)
T COG4981 100 DPYLWKL----QIGGKRLVQKARASGAPIDGVVISAGIPSLEEA-------VELIEELGDDGFPYVAFKPGTIEQIRSVI 168 (717)
T ss_pred chHHhhh----cCChHHHHHHHHhcCCCcceEEEecCCCcHHHH-------HHHHHHHhhcCceeEEecCCcHHHHHHHH
Confidence 5532111 222345666666655432 234443332 12323223346788999999999999999
Q ss_pred HHHHhC-CCcEEEe-----cCCCCC
Q psy6765 200 RYCNEQ-KIAVCPQ-----GGNTGV 218 (246)
Q Consensus 200 ~~a~~~-~~~~~~~-----ggG~~~ 218 (246)
++|+++ ..||+.+ +|||.-
T Consensus 169 ~IAka~P~~pIilq~egGraGGHHS 193 (717)
T COG4981 169 RIAKANPTFPIILQWEGGRAGGHHS 193 (717)
T ss_pred HHHhcCCCCceEEEEecCccCCccc
Confidence 999987 5677774 455543
No 81
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=62.56 E-value=58 Score=23.79 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGV 152 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl 152 (246)
++..||..+++-..+++.|+.++ -+++- . .+ ..|+++|+++.++....|..-..-...+....+
T Consensus 5 ~~p~eI~~~Lr~L~~~~~~l~v~-~~~g~---------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~~ 68 (108)
T PF07317_consen 5 RNPREILAVLRDLAKQRSPLTVR-HPRGQ---------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEEL 68 (108)
T ss_dssp -SHHHHHHHHHHHHHTT--EEEE-TT-SS---------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--E
T ss_pred cCHHHHHHHHHHHHhCCCeEEEE-eCCCC---------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCcE
Confidence 57889999999999999999998 33222 1 22 256788999888888777776655555555555
Q ss_pred eeec
Q psy6765 153 VVLG 156 (246)
Q Consensus 153 ~~~~ 156 (246)
.+-.
T Consensus 69 ~~~a 72 (108)
T PF07317_consen 69 TFVA 72 (108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 82
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=61.89 E-value=9.4 Score=31.21 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCC
Q psy6765 78 VSAILRYCNEQKIAVCPQGGNTGV 101 (246)
Q Consensus 78 v~~~v~~a~~~~i~v~~~GgG~~~ 101 (246)
....++||+++++||++.++|+.+
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 455778999999999999999987
No 83
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=60.86 E-value=13 Score=27.18 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 63 EGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 63 ~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
+..| ..+|++.+..|++.++.+|.+.|+||...+.-
T Consensus 53 RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 53 RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred hcCCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 3455 66788888899999999999999999998754
No 84
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=60.59 E-value=23 Score=32.16 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCC---CeEEEecCCCCCceeeeCCCCeEEEcCCcc
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY---DEVIVSASLMNKILNFDELSGNVNSMSNAL 139 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~---~gvvidl~~m~~i~~id~~~~~v~v~aG~~ 139 (246)
+.-...++.|.+.+|...++.. +=...+..|+|.+ |-.+... =+.+|-..++..+..|+.....+++++|++
T Consensus 200 ~~~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDv-gLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt 274 (493)
T COG4630 200 GSGDDRFIVPATLADFADLLAA----HPGATIVAGSTDV-GLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVT 274 (493)
T ss_pred cCCCceeEeeccHHHHHHHHhh----CCCCEEEecCcch-hhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCcc
Confidence 3445678899999999988752 2235666777776 2233211 145555666666656666778899999999
Q ss_pred HHHHHHHHhhc
Q psy6765 140 VTNRSLELSNT 150 (246)
Q Consensus 140 ~~~l~~~L~~~ 150 (246)
..+....|.++
T Consensus 275 ~t~a~~~la~~ 285 (493)
T COG4630 275 YTQAYRALAGR 285 (493)
T ss_pred HHHHHHHHHhh
Confidence 99999888654
No 85
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=60.42 E-value=22 Score=31.16 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
+-|.+|+.+++++|+++||-|+|
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEe
Confidence 56999999999999999999998
No 86
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=57.60 E-value=26 Score=30.63 Aligned_cols=111 Identities=21% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccH----HHHHHHHhhcCce
Q psy6765 78 VSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALV----TNRSLELSNTGVV 153 (246)
Q Consensus 78 v~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~----~~l~~~L~~~gl~ 153 (246)
|+..+.+|+..||+|++-||==++..+... .-.|--||..|.+. ..+.|.+|+.. ..-.++|..+|+.
T Consensus 99 VsaTm~lA~~aGI~VfaTGGiGGVHrga~~-t~DiSaDL~eL~rt-------pv~VV~aG~KsILDi~~TLE~LET~GV~ 170 (293)
T PF04227_consen 99 VSATMILAHLAGIKVFATGGIGGVHRGAEE-TFDISADLTELART-------PVAVVCAGAKSILDIPKTLEYLETQGVP 170 (293)
T ss_dssp HHHHHHHHHHTT--EEE-S-B--B-TT----SS-B-HHHHHHTTS--------EEEEESBB-TTS-HHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCcC-cchhhhHHHHHhcC-------CceEEEccCcchhchHHHHHHhhcCCeE
Confidence 788999999999999997753333222110 11344455555543 34567777653 3344677788886
Q ss_pred eecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCC
Q psy6765 154 VLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKI 207 (246)
Q Consensus 154 ~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~ 207 (246)
+-..... .. -.+|+.. .+..... +-.+++|++++++.-++.++
T Consensus 171 Vvgy~t~-~f-------PaFy~~~-Sg~~~~~--~~d~~~e~A~~~~~~~~lgl 213 (293)
T PF04227_consen 171 VVGYGTD-EF-------PAFYTRS-SGFKSPY--RVDSPEEAARIIRAHWQLGL 213 (293)
T ss_dssp EEEES-S-B---------BTTBS---S-B-----EE-SHHHHHHHHHHHHHTT-
T ss_pred EEEecCC-CC-------CeeeccC-CCCCCCc--ccCCHHHHHHHHHHHHHhCC
Confidence 6544222 11 1244322 1111111 33688888888888777654
No 87
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=57.35 E-value=19 Score=28.18 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=28.0
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 63 EGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 63 ~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
...| ..|+.|.+.+|+..++++|-+..-|+.+|
T Consensus 120 ~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 120 RAIPNMTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4455 45889999999999999999888798886
No 88
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=57.31 E-value=12 Score=30.53 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCCC
Q psy6765 195 VSAILRYCNEQKIAVCPQGGNTGVV 219 (246)
Q Consensus 195 v~~~v~~a~~~~~~~~~~ggG~~~~ 219 (246)
....++||++|++||++.++|+...
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567899999999999999999873
No 89
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=56.97 E-value=26 Score=26.10 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE-ecCC
Q psy6765 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP-QGGN 98 (246)
Q Consensus 62 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~-~GgG 98 (246)
..+.+..|++..|++|+.++.+-|.+.+++... +-+|
T Consensus 44 ~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG 81 (113)
T PRK04322 44 NEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAG 81 (113)
T ss_pred HCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 368999999999999999999999999988544 4443
No 90
>KOG3282|consensus
Probab=55.44 E-value=26 Score=28.42 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 62 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
..++|+.||+.++++++.++.+.|++.+++...
T Consensus 121 ~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 121 NCGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 468999999999999999999999999887544
No 91
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.02 E-value=13 Score=32.61 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--ecCCCCC
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCP--QGGNTGV 101 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~--~GgG~~~ 101 (246)
.-|.+|+.+++++|+++||.|+| -.=||..
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~~ 99 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHST 99 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHHH
Confidence 45889999999999999999999 3445543
No 92
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=54.86 E-value=13 Score=33.13 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe--cCCCCC
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCPQ--GGNTGV 101 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~~--GgG~~~ 101 (246)
-|.+|+.+++++|+++||.|+|- .=||..
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~~ 102 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHTN 102 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHHH
Confidence 48999999999999999999993 445543
No 93
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=53.79 E-value=14 Score=32.41 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
|.+|+.+++++|+++||.|+|-
T Consensus 70 T~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8899999999999999999995
No 94
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=52.93 E-value=14 Score=32.81 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
|.+|+.+++++|++++|.|+|-
T Consensus 73 T~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999995
No 95
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=52.20 E-value=9.1 Score=31.41 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCCCCeecCccccccccccc--------cc----cCCCCc---cEEEeCC-----CHHHHHHHHHHHHh
Q psy6765 28 THIQKFKQILSNDDNRVLTDEDSVKPYNVDW--------LK----TQEGKS---KLVLKPK-----TTEEVSAILRYCNE 87 (246)
Q Consensus 28 ~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~--------~~----~~~~~p---~~vv~P~-----s~~ev~~~v~~a~~ 87 (246)
+.+..|+..++ ...|++.+++...+.... +. .....| ..+|.|. ++++|..+++.++.
T Consensus 36 dvi~Al~~~~~--~i~Vvtpde~~~~~a~~~~vl~d~dLN~Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d 113 (210)
T COG1920 36 DVLGALAGVLG--EITVVTPDEEVLVPATKLEVLADPDLNTAINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKD 113 (210)
T ss_pred HHHHHhhhhcC--CceEEcCChHhhhhcccceeeeccchHHHHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCC
Confidence 34455555555 556777665544433221 11 111222 2455555 47999999999999
Q ss_pred CCCcEEE-ecCCCCC
Q psy6765 88 QKIAVCP-QGGNTGV 101 (246)
Q Consensus 88 ~~i~v~~-~GgG~~~ 101 (246)
..+-+.| +|||||.
T Consensus 114 ~dvviaP~~gGGTn~ 128 (210)
T COG1920 114 ADVVIAPGRGGGTNV 128 (210)
T ss_pred CcEEEecCCCCceEE
Confidence 8876777 7888887
No 96
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=51.73 E-value=13 Score=32.93 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--ecCCCCC
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCP--QGGNTGV 101 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~--~GgG~~~ 101 (246)
.-|.+|+++++++|+++||.|+| -.=||.-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~~ 100 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHAE 100 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-H
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHHH
Confidence 45899999999999999999999 4666654
No 97
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=51.15 E-value=31 Score=25.72 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.4
Q ss_pred cCCCCccEEEeCCCHHHHHHHHHHHHhCCCcEE
Q psy6765 61 TQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVC 93 (246)
Q Consensus 61 ~~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~ 93 (246)
...+.+..|++..+++|+.++.+.|.+.+++..
T Consensus 45 ~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~ 77 (115)
T cd02407 45 ELEGQKKVVLKVPSEEELLELAKKAKELGLPHS 77 (115)
T ss_pred HhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeE
Confidence 457899999999999999999999999988754
No 98
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=50.81 E-value=14 Score=32.78 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe--cCCCCC
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQ--GGNTGV 218 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~--ggG~~~ 218 (246)
|.+|+++++++|+++||.|+|- .=||..
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~ 100 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAE 100 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-H
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHH
Confidence 8899999999999999999984 235544
No 99
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.79 E-value=17 Score=32.17 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--ecCCCCC
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCP--QGGNTGV 101 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~--~GgG~~~ 101 (246)
.-|.+|+.+++++|+++||.|+| -.=||..
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~PGH~~ 95 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDVPGHAS 95 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecCccchH
Confidence 36999999999999999999998 3555654
No 100
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=50.48 E-value=27 Score=27.88 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHh--CCCcEEEecCC
Q psy6765 63 EGKS-KLVLKPKTTEEVSAILRYCNE--QKIAVCPQGGN 98 (246)
Q Consensus 63 ~~~p-~~vv~P~s~~ev~~~v~~a~~--~~i~v~~~GgG 98 (246)
...| .-|+.|.+.+|+..+++++-+ .+-|+.+|-.-
T Consensus 134 ~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 134 RSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp HTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred ccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 4455 458899999999999999999 66898887543
No 101
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.27 E-value=17 Score=32.10 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEec--CCCCC
Q psy6765 190 KTTEEVSAILRYCNEQKIAVCPQG--GNTGV 218 (246)
Q Consensus 190 ~s~~~v~~~v~~a~~~~~~~~~~g--gG~~~ 218 (246)
=|.+|+.+++++|+++||.|+|-= =||..
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~~ 95 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHAS 95 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccchH
Confidence 489999999999999999999852 35554
No 102
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=50.23 E-value=17 Score=32.62 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEE--ecCCCCC
Q psy6765 74 TTEEVSAILRYCNEQKIAVCP--QGGNTGV 101 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~--~GgG~~~ 101 (246)
|.+|+.++|++|+++||.|+| =.=||..
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~ 97 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTG 97 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhH
Confidence 999999999999999999999 3556654
No 103
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.21 E-value=17 Score=32.73 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEE--ecCCCCC
Q psy6765 74 TTEEVSAILRYCNEQKIAVCP--QGGNTGV 101 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~--~GgG~~~ 101 (246)
|.+|+.+++++|+++||.|+| -.=||..
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~ 113 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHAL 113 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHH
Confidence 799999999999999999998 3455543
No 104
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=49.61 E-value=17 Score=31.79 Aligned_cols=23 Identities=39% Similarity=0.458 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 190 KTTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 190 ~s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
=|.+|+.+++++|+++++.++|-
T Consensus 57 yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 57 YTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred cCHHHHHHHHHHHHHcCCEEEec
Confidence 48999999999999999999995
No 105
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=48.77 E-value=62 Score=23.16 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeC---------CCHHHHHHHHHHHHhCCCcE
Q psy6765 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKP---------KTTEEVSAILRYCNEQKIAV 92 (246)
Q Consensus 26 ~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P---------~s~~ev~~~v~~a~~~~i~v 92 (246)
...++++|++.+. +.. .....-....-.+....-|-+|++| -+++++..+|+..-..+.++
T Consensus 20 g~~l~~~l~~~l~--~~~----~~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v~p~~v~~Iv~~hl~~g~~v 89 (97)
T cd03062 20 GPPLAAELRAELP--EHG----PGGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRVTPEHVPPIVDRLILGGKII 89 (97)
T ss_pred CHHHHHHHHHHHH--HhC----CCceEEEeCCcCCccCcCCEEEEEeCCCeeEEeecCHHHHHHHHHHHhcCCcCC
Confidence 3567788887776 221 1111111111223445678999999 59999999999877766544
No 106
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=48.51 E-value=1.5e+02 Score=27.88 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCC-----C-------CCCCCcc--------cCCCeEEEecCCCCCceeeeCCCCe
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCPQGGN-----T-------GVVAGGV--------PLYDEVIVSASLMNKILNFDELSGN 131 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~~GgG-----~-------~~~g~~~--------~~~~gvvidl~~m~~i~~id~~~~~ 131 (246)
|-+.+.+.++-++|++||+|+..=|.. + .+.+-.+ ..-+++.+++++=-.. +-+.
T Consensus 200 pvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgA----pvGg- 274 (467)
T TIGR02617 200 PVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMV----PMGG- 274 (467)
T ss_pred EeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCC----cccc-
Confidence 668899999999999999999985532 1 1222221 1124777887761111 1111
Q ss_pred EEEcCCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhh-ccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEE
Q psy6765 132 VNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKIL-NFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVC 210 (246)
Q Consensus 132 v~v~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~-~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~ 210 (246)
+.++.--.+.++.+.+...-+.+=+.+.|.-.+ +.++...- +-.+. -+.-..-.-..+|+-+.+-..+.|+|+.
T Consensus 275 ~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGla--grd~ea~a~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~Gvpi~ 349 (467)
T TIGR02617 275 LLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLE--GGAMERLAVGLYDG---MNLDWLAYRINQVQYLVNGLEEIGVVCQ 349 (467)
T ss_pred eEEecchhHHHHHHHHHhhcccccCCcCcCchh--HHHHHHHHhhhhhc---ccHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 223332223356666665555554555553211 00011000 00000 0000011246889999999999999998
Q ss_pred EecCCCCC
Q psy6765 211 PQGGNTGV 218 (246)
Q Consensus 211 ~~ggG~~~ 218 (246)
- -|||..
T Consensus 350 ~-~Gghav 356 (467)
T TIGR02617 350 Q-AGGHAA 356 (467)
T ss_pred e-cCccEE
Confidence 7 999986
No 107
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.43 E-value=18 Score=32.45 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
|.+|+.+++++|+++||.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 7999999999999999999985
No 108
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=48.43 E-value=41 Score=25.12 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE-ecCCC
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP-QGGNT 99 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~-~GgG~ 99 (246)
.+.+..+++..+++|+.++.+-|.+.+++..+ +=+|.
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGH 84 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 67899999999999999999999999998644 44333
No 109
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.72 E-value=17 Score=32.19 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE--ecCCCC
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCP--QGGNTG 100 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~--~GgG~~ 100 (246)
-|.+|+.+++++|+++||.|+| --=||.
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~ 108 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHS 108 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHH
Confidence 3899999999999999999998 344454
No 110
>KOG2499|consensus
Probab=47.41 E-value=17 Score=33.94 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEec--CCCCCCC
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQG--GNTGVVA 220 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~g--gG~~~~~ 220 (246)
|.+||+.+|++|+-+||+|+|-= =||..++
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~sW 279 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGSW 279 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCcccccc
Confidence 78999999999999999999853 3555444
No 111
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=47.07 E-value=39 Score=25.05 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE-ecCCC
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP-QGGNT 99 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~-~GgG~ 99 (246)
.+.+..|++..|++++.++.+.|.+.|+|..+ +-.|.
T Consensus 48 ~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~ 85 (116)
T PF01981_consen 48 NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGR 85 (116)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 67899999999999999999999999998654 44443
No 112
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=46.78 E-value=20 Score=32.06 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEec--CCCCCC
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQG--GNTGVV 219 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~g--gG~~~~ 219 (246)
|.+|+.+++++|++++|.|+|-= =||+..
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a 98 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGS 98 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHH
Confidence 89999999999999999999953 366543
No 113
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.44 E-value=18 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
|.+|+.+++++|+++||.|+|-
T Consensus 80 T~~di~eiv~yA~~rgI~vIPE 101 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPE 101 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEecc
Confidence 8899999999999999999984
No 114
>KOG2212|consensus
Probab=46.42 E-value=54 Score=29.59 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhCCCC---CCeecCcccccccc--ccccccCCCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 27 DTHIQKFKQILSNDD---NRVLTDEDSVKPYN--VDWLKTQEGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 27 ~~~~~~L~~~l~~~~---~~v~~~~~~~~~~~--~~~~~~~~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
.++..|-+++|++++ -.|.+..+.+..+. +.|+-+++... +.--+-.++||.+..|+-|++-|+.+.+
T Consensus 40 ~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiyV 113 (504)
T KOG2212|consen 40 VDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIYV 113 (504)
T ss_pred HHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceEEeeccCCCHHHHHHHHHHhhccceEEEe
Confidence 467788888887321 13444455555555 56765553322 5666788999999999999999988765
No 115
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.89 E-value=1.1e+02 Score=22.57 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=47.8
Q ss_pred CCccHHHHHHHHhhcC-ceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecC
Q psy6765 136 SNALVTNRSLELSNTG-VVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG 214 (246)
Q Consensus 136 aG~~~~~l~~~L~~~g-l~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~gg 214 (246)
++.....+.+.|.++| -.+|..|.+... ++ ...|.+-.+....++.++.....+.+.++++.|.+.+++-+..-.
T Consensus 12 ~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i--~G--~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 12 PGKFGYRVLRNLKAAGYEVYPVNPKGGEI--LG--IKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp TTSHHHHHHHHHHHTT-EEEEESTTCSEE--TT--EE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred CCChHHHHHHHHHhCCCEEEEECCCceEE--Cc--EEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3444566777777788 678888887543 01 011112222347899999999999999999999999887666555
Q ss_pred C
Q psy6765 215 N 215 (246)
Q Consensus 215 G 215 (246)
|
T Consensus 88 g 88 (116)
T PF13380_consen 88 G 88 (116)
T ss_dssp T
T ss_pred c
Confidence 5
No 116
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=45.73 E-value=21 Score=33.22 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEE--ecCCCCC
Q psy6765 74 TTEEVSAILRYCNEQKIAVCP--QGGNTGV 101 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~--~GgG~~~ 101 (246)
|.+|+.++|++|++++|.|+| --=||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~ 124 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHAR 124 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHH
Confidence 899999999999999999998 3455544
No 117
>KOG1199|consensus
Probab=45.71 E-value=21 Score=29.05 Aligned_cols=55 Identities=5% Similarity=0.082 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccC
Q psy6765 190 KTTEEVSAILRYCNEQ--KIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244 (246)
Q Consensus 190 ~s~~~v~~~v~~a~~~--~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~ 244 (246)
+|++||+..+..++.. .+-...-..|..+.--..+.+.+...|++.+.++|++|.
T Consensus 65 tsekdv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~ 121 (260)
T KOG1199|consen 65 TSEKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNV 121 (260)
T ss_pred CcHHHHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeee
Confidence 6889999999887653 456666677777754445555678888888888888763
No 118
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.88 E-value=22 Score=31.20 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=26.5
Q ss_pred ccEEEeCC------CHHHHHHHHHHHHhCC------CcEEEecCCCCC
Q psy6765 66 SKLVLKPK------TTEEVSAILRYCNEQK------IAVCPQGGNTGV 101 (246)
Q Consensus 66 p~~vv~P~------s~~ev~~~v~~a~~~~------i~v~~~GgG~~~ 101 (246)
...+++|. .+++|.++++.+++.+ +=|.+||||+--
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 34566665 4789999999998654 667779999843
No 119
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=43.70 E-value=58 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=30.0
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
.+.+..|++..+++|+.++-+-|.+.+++..++
T Consensus 53 ~g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 53 DNMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 668999999999999999999999999987663
No 120
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=43.51 E-value=1.4e+02 Score=25.64 Aligned_cols=148 Identities=11% Similarity=-0.003 Sum_probs=75.8
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCC-CCCCcccCCCeEEEecCC---CCCcee--eeCCCC-eEEEcC
Q psy6765 64 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG-VVAGGVPLYDEVIVSASL---MNKILN--FDELSG-NVNSMS 136 (246)
Q Consensus 64 ~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~-~~g~~~~~~~gvvidl~~---m~~i~~--id~~~~-~v~v~a 136 (246)
....+|+-|.+..+...+...+.+.++|++.-+.+.. +++... .+....+.... +..+.+ .+.... .+.+..
T Consensus 64 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~ 142 (336)
T cd06360 64 DKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLC-APNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAW 142 (336)
T ss_pred hCCcEEEccCccHhHHHHHHHHHhcCceEEecCCCCccccccCC-CCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEec
Confidence 4567899998888888888899999999987654432 221110 01111122111 000000 011111 122211
Q ss_pred ----Ccc-HHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCC--cE
Q psy6765 137 ----NAL-VTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKI--AV 209 (246)
Q Consensus 137 ----G~~-~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~--~~ 209 (246)
|.. ...+.+.+.+.|+.+.....+... ..+...... ......|++|+......+...+++-+++.++ .+
T Consensus 143 ~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~---~~d~~~~v~-~~~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~ 218 (336)
T cd06360 143 DYAFGYEVVEGFKEAFTEAGGKIVKELWVPFG---TSDFASYLA-QIPDDVPDAVFVFFAGGDAIKFVKQYDAAGLKAKI 218 (336)
T ss_pred cchhhHHHHHHHHHHHHHcCCEEEEEEecCCC---CcchHHHHH-HHHhcCCCEEEEecccccHHHHHHHHHHcCCccCC
Confidence 111 234556666667655321111000 000011111 1123568999988888999999999999988 66
Q ss_pred EEecCCC
Q psy6765 210 CPQGGNT 216 (246)
Q Consensus 210 ~~~ggG~ 216 (246)
...|++.
T Consensus 219 ~~~~~~~ 225 (336)
T cd06360 219 PLIGSGF 225 (336)
T ss_pred eEEeccc
Confidence 5555443
No 121
>PRK07094 biotin synthase; Provisional
Probab=43.50 E-value=99 Score=27.04 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEec-CCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCc
Q psy6765 74 TTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA-SLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGV 152 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl-~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl 152 (246)
+.++|.+.++.+.+.|+.-+...||... ....+ -+.++ +.+.+. .+..+.+..|....+..+.|.+.|+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~---~~~~~--~l~~l~~~i~~~-----~~l~i~~~~g~~~~e~l~~Lk~aG~ 140 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDP---YYTDE--KIADIIKEIKKE-----LDVAITLSLGERSYEEYKAWKEAGA 140 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCC---CCCHH--HHHHHHHHHHcc-----CCceEEEecCCCCHHHHHHHHHcCC
Confidence 8999999999999999987777777543 11111 11111 112110 1223455667777788888888775
Q ss_pred e---eecCCCchhHHhhHHhhhhhhccc----------c--ccCccceEE-c-CCCHHHHHHHHHHHHhCCCc
Q psy6765 153 V---VLGVPLYDEVIVSASLMNKILNFD----------E--LSGKSKLVL-K-PKTTEEVSAILRYCNEQKIA 208 (246)
Q Consensus 153 ~---~~~~p~s~~~~~~~~~~~~~~~~~----------~--~~~~p~~vv-~-P~s~~~v~~~v~~a~~~~~~ 208 (246)
. +..+..+... ... ....++.. . +......++ . =.+.+++.+.++++++.+..
T Consensus 141 ~~v~~glEs~~~~~-~~~--i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~ 210 (323)
T PRK07094 141 DRYLLRHETADKEL-YAK--LHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLD 210 (323)
T ss_pred CEEEeccccCCHHH-HHH--hCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCC
Confidence 3 2222222211 000 00011100 0 111233333 2 36889999999998888764
No 122
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.01 E-value=27 Score=32.45 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEec--CCCCC
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQG--GNTGV 218 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~g--gG~~~ 218 (246)
|.+|+.+++++|++++|.|+|-= =||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~ 124 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHAR 124 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHH
Confidence 88999999999999999999842 25544
No 123
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=40.78 E-value=47 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=27.5
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 63 EGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 63 ~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
+..| ..|+.|.+.+|...+++++.+++-|++++
T Consensus 131 r~iPg~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 131 AHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4455 56888999999999999999988787764
No 124
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=40.56 E-value=66 Score=24.00 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE-ecCC
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP-QGGN 98 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~-~GgG 98 (246)
.+.+..|++..+++|+.++.+.|.+.+++..+ +=+|
T Consensus 47 ~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG 83 (115)
T cd02430 47 EGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAG 83 (115)
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56899999999999999999999999988544 4433
No 125
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.50 E-value=52 Score=24.17 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=27.8
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCC
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG 100 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~ 100 (246)
-++=++....|+.++++.|+++|+|++...+..+
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4455678899999999999999999988766543
No 126
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=39.98 E-value=2.5e+02 Score=24.67 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcC
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTG 151 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~g 151 (246)
.-+.+|+.++++.+.+.++.-+...||--+ .-++=..++=.+.++..+. .-.+ .--|..+.+..+.|.+.|
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltGGEPl---l~~~l~~li~~i~~~~gi~-----~v~i-tTNG~ll~~~~~~L~~~g 112 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTGGEPL---LRKDLVELVARLAALPGIE-----DIAL-TTNGLLLARHAKDLKEAG 112 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcccc---ccCCHHHHHHHHHhcCCCC-----eEEE-EeCchhHHHHHHHHHHcC
Confidence 357899999999999999876666666544 2111000110011111110 1112 224555666677777766
Q ss_pred ce---eecCCCchh---HHhh-H---Hhhhhhhc-ccccc---CccceEEcC-CCHHHHHHHHHHHHhCCCc-----EEE
Q psy6765 152 VV---VLGVPLYDE---VIVS-A---SLMNKILN-FDELS---GKSKLVLKP-KTTEEVSAILRYCNEQKIA-----VCP 211 (246)
Q Consensus 152 l~---~~~~p~s~~---~~~~-~---~~~~~~~~-~~~~~---~~p~~vv~P-~s~~~v~~~v~~a~~~~~~-----~~~ 211 (246)
+. +..+..... ...+ . ........ ....+ ..-..|+.+ .+.+++.++++++.++++. +.|
T Consensus 113 l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~mp 192 (334)
T TIGR02666 113 LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRFIELMP 192 (334)
T ss_pred CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 52 222211111 0000 0 00000000 00111 223446655 6999999999999999985 567
Q ss_pred ecCCCC
Q psy6765 212 QGGNTG 217 (246)
Q Consensus 212 ~ggG~~ 217 (246)
.+++..
T Consensus 193 ~~~~~~ 198 (334)
T TIGR02666 193 LGEGNG 198 (334)
T ss_pred CCCCcc
Confidence 766633
No 127
>KOG0524|consensus
Probab=39.22 E-value=34 Score=29.73 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=40.4
Q ss_pred ccccccccccCCCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCC
Q psy6765 52 KPYNVDWLKTQEGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGV 101 (246)
Q Consensus 52 ~~~~~~~~~~~~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~ 101 (246)
.+|+++|..+++..| .-||-|-|.+|..-++|.|-+..-||+..-.-.=|
T Consensus 158 AqHSQ~f~~wy~siPGlkvvapysaedakGLlKaAIRd~NPVV~lEnelLY 208 (359)
T KOG0524|consen 158 AQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKAAIRDENPVVFLENELLY 208 (359)
T ss_pred hhhhhhhHHHhccCCCceEeccCChhhhhhHHHHhccCCCCeEEEechhhc
Confidence 567788777777666 56999999999999999999888899887554443
No 128
>KOG2499|consensus
Probab=38.89 E-value=28 Score=32.60 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
--|.+||+++|+||+-+||.|.|
T Consensus 246 vYT~eDv~evV~yarlRGIRVlp 268 (542)
T KOG2499|consen 246 VYTREDVSEVVEYARLRGIRVLP 268 (542)
T ss_pred eecHHHHHHHHHHHHhccceeee
Confidence 34889999999999999999998
No 129
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.11 E-value=94 Score=25.64 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=24.3
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEE
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVC 93 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~ 93 (246)
--.|++..+.++..++++.+.+.|+++.
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~i 33 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAI 33 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEE
Confidence 3578999999999999999999888754
No 130
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=37.62 E-value=56 Score=25.43 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.4
Q ss_pred eEEcCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 185 ~vv~P~s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
.|+.|.+.+|+..++++|-+..-|++.|
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4899999999999999988777687766
No 131
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=37.51 E-value=1.3e+02 Score=26.49 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEecCCCCCCCCcccCCC--eEEEecCCCCCc--eeeeCCCCeEEEcCCccHHHHHHHHh
Q psy6765 74 TTEEVSAILRYCNEQ-KIAVCPQGGNTGVVAGGVPLYD--EVIVSASLMNKI--LNFDELSGNVNSMSNALVTNRSLELS 148 (246)
Q Consensus 74 s~~ev~~~v~~a~~~-~i~v~~~GgG~~~~g~~~~~~~--gvvidl~~m~~i--~~id~~~~~v~v~aG~~~~~l~~~L~ 148 (246)
+.+++.+++++++++ ++.-++.+||--+ ..+... .++=.+..+..+ +.+.. ....+-+.....++.+.|.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl---~~~~~~L~~ll~~l~~i~~v~~iri~T--r~~v~~p~rit~ell~~L~ 194 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPL---VLSPRRLGDIMARLAAIDHVKIVRFHT--RVPVADPARVTPALIAALK 194 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcc---cCCHHHHHHHHHHHHhCCCccEEEEeC--CCcccChhhcCHHHHHHHH
Confidence 678999999999866 7888888888777 222111 111111222221 12221 1112233334567888887
Q ss_pred hcCce--eecCCCchhHHhh-HHhhhhhhccccccCccceEEcC---CCHHHHHHHHHHHHhCCCc
Q psy6765 149 NTGVV--VLGVPLYDEVIVS-ASLMNKILNFDELSGKSKLVLKP---KTTEEVSAILRYCNEQKIA 208 (246)
Q Consensus 149 ~~gl~--~~~~p~s~~~~~~-~~~~~~~~~~~~~~~~p~~vv~P---~s~~~v~~~v~~a~~~~~~ 208 (246)
+.|.. +..+-......+. ........-.......-..|+.. .+.+++.++++++.+.++.
T Consensus 195 ~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 195 TSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence 76632 2222111110000 00000000000122233456766 7888999999999888874
No 132
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=36.87 E-value=94 Score=25.01 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=31.4
Q ss_pred EEeCCCHH-HHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCcc
Q psy6765 69 VLKPKTTE-EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNAL 139 (246)
Q Consensus 69 vv~P~s~~-ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~ 139 (246)
++-|.+.+ |+.++.+-+.+.++|++....-..- ....++--.+-||++--..+ -.++++.++ +.|...
T Consensus 87 lfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~-~~~l~~~~~~~Idl~~~~~L-vP~EdG~Ri-g~P~~~ 155 (172)
T PF10740_consen 87 LFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPD-EEDLEDLADVHIDLKLPKPL-VPTEDGDRI-GFPHLM 155 (172)
T ss_dssp EEES-S--HHHHHHHHHHHHHT--EEEEE-SS----TTGGG-SSS-EE----S-S-EE-TTS-EE----HHH
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCC-CCchhhhhhheeecccCCCc-ccCCCCCEe-cchHHH
Confidence 45576666 9999999999999999998722221 12233222466888776676 556665544 444433
No 133
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=36.09 E-value=38 Score=31.26 Aligned_cols=34 Identities=15% Similarity=0.449 Sum_probs=27.2
Q ss_pred ccEEEeCCCH------HHHHHHHHHHHhC--CCcEEEecCCC
Q psy6765 66 SKLVLKPKTT------EEVSAILRYCNEQ--KIAVCPQGGNT 99 (246)
Q Consensus 66 p~~vv~P~s~------~ev~~~v~~a~~~--~i~v~~~GgG~ 99 (246)
....++|... .+|.++++.+++. ++=|++||||+
T Consensus 163 ~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 163 VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 4678888765 8899999999874 66678899996
No 134
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=35.95 E-value=50 Score=20.40 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCcEEEecCCC
Q psy6765 79 SAILRYCNEQKIAVCPQGGNT 99 (246)
Q Consensus 79 ~~~v~~a~~~~i~v~~~GgG~ 99 (246)
++-+++.+++|||+.++..|+
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred HHHHHHHHHCCCeeEECCCCC
Confidence 345788999999999987775
No 135
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=35.93 E-value=70 Score=23.36 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhhCCCCCCeecCccccccccccccccCCCCccEEEeCCCHH--HHHHHHHHHHhCCCcEEEecC
Q psy6765 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTE--EVSAILRYCNEQKIAVCPQGG 97 (246)
Q Consensus 26 ~~~~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~--ev~~~v~~a~~~~i~v~~~Gg 97 (246)
.+.+++-|.-... ...++...+.....- -.+.+.+|+.+.+.. .-.++.++|+.+++|++..+.
T Consensus 2 ~~k~l~lLglA~r--AGklv~G~~~v~~ai------k~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t 67 (104)
T PRK05583 2 MNKFLNFLGLTKK--AGKLLEGYNKCEEAI------KKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS 67 (104)
T ss_pred hHHHHHHHHHHHH--hCCeeecHHHHHHHH------HcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC
Confidence 4445555443333 345555543322221 135788888887754 488999999999999977743
No 136
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=35.11 E-value=1.6e+02 Score=27.33 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=50.9
Q ss_pred eEEEcC----CccHHHHHHHHhhcCc---eeecCCCchhHHhhHHhhhhhh-ccccccCccceEEcCCCHHHHHHHHHHH
Q psy6765 131 NVNSMS----NALVTNRSLELSNTGV---VVLGVPLYDEVIVSASLMNKIL-NFDELSGKSKLVLKPKTTEEVSAILRYC 202 (246)
Q Consensus 131 ~v~v~a----G~~~~~l~~~L~~~gl---~~~~~p~s~~~~~~~~~~~~~~-~~~~~~~~p~~vv~P~s~~~v~~~v~~a 202 (246)
.+.+++ |-.-..+.+.|.++|+ .+|..|.+... .+ ...| +-......|++++.....+.+.++++.|
T Consensus 10 iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i--~G---~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~ 84 (447)
T TIGR02717 10 VAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI--LG---VKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEEC 84 (447)
T ss_pred EEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc--CC---ccccCCHHHCCCCCCEEEEecCHHHHHHHHHHH
Confidence 455555 3344556667766554 78888876543 11 1122 2223445678888888888888888888
Q ss_pred HhCCCcEE-EecCCCCC
Q psy6765 203 NEQKIAVC-PQGGNTGV 218 (246)
Q Consensus 203 ~~~~~~~~-~~ggG~~~ 218 (246)
.+.+++-+ +.++|-.-
T Consensus 85 ~~~gv~~~vi~s~gf~e 101 (447)
T TIGR02717 85 GEKGVKGAVVITAGFKE 101 (447)
T ss_pred HhcCCCEEEEECCCccc
Confidence 88888644 55555443
No 137
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=34.80 E-value=69 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHhC-CCcEEEe
Q psy6765 63 EGKS-KLVLKPKTTEEVSAILRYCNEQ-KIAVCPQ 95 (246)
Q Consensus 63 ~~~p-~~vv~P~s~~ev~~~v~~a~~~-~i~v~~~ 95 (246)
...| ..|+.|.+.+|+..+++++-++ +-|+.+|
T Consensus 129 ~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p~~i~ 163 (168)
T smart00861 129 RAIPGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIR 163 (168)
T ss_pred hcCCCcEEEecCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 4556 5589999999999999999966 3465554
No 138
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=34.15 E-value=69 Score=30.04 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=36.2
Q ss_pred ccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc--ccCCCcEEEEcCCcCcc
Q psy6765 182 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG--VPLYDEVIVSASLMNKI 239 (246)
Q Consensus 182 ~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~--~~~~~gv~idl~~m~~i 239 (246)
.....++|+|.+|..++++- +. ...+.+|||.+.-.. -......+||++++..+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL 246 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAEL 246 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhh
Confidence 34568999999999888763 32 356789999983221 11123699999876543
No 139
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.15 E-value=1.7e+02 Score=20.64 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=42.6
Q ss_pred ccHHHHHHHHhhcCceeecC--CCchhHHhhHHhhhhhhccccccCccceEEcCC---CHHHHHHHHHHHHhCCCcEEEe
Q psy6765 138 ALVTNRSLELSNTGVVVLGV--PLYDEVIVSASLMNKILNFDELSGKSKLVLKPK---TTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 138 ~~~~~l~~~L~~~gl~~~~~--p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~---s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
-....+.+.+.+.|..+-.- ...... .... -...-..+++||.++ |..-...+-+.|+++++|++.-
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~------~~~~--l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEK------KASR--LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCcc------chhH--HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 56677888888888755433 111110 0000 011235678887776 5677778888999999999986
Q ss_pred c
Q psy6765 213 G 213 (246)
Q Consensus 213 g 213 (246)
-
T Consensus 82 ~ 82 (97)
T PF10087_consen 82 R 82 (97)
T ss_pred C
Confidence 3
No 140
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.89 E-value=1e+02 Score=21.23 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=27.2
Q ss_pred CCCccEEEeCCC-HHHHHHHHHHHHhCCCcEEEe
Q psy6765 63 EGKSKLVLKPKT-TEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 63 ~~~p~~vv~P~s-~~ev~~~v~~a~~~~i~v~~~ 95 (246)
.+...+++.-.+ .+++.++++..++.|..+...
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 445666778888 999999999999999888764
No 141
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=33.80 E-value=39 Score=29.63 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=30.6
Q ss_pred cccccCCCCcc-EEEeCCCHHHHHHHHHHHHhCCCcEEEec
Q psy6765 57 DWLKTQEGKSK-LVLKPKTTEEVSAILRYCNEQKIAVCPQG 96 (246)
Q Consensus 57 ~~~~~~~~~p~-~vv~P~s~~ev~~~v~~a~~~~i~v~~~G 96 (246)
||.......|. -++...++++|.+++.++.+.++|+.+.|
T Consensus 249 d~~~wlk~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~G 289 (324)
T COG2144 249 DFRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIG 289 (324)
T ss_pred cHHHHHHhCCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEE
Confidence 33333344555 67777788899999999999999999876
No 142
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.61 E-value=67 Score=22.81 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=30.7
Q ss_pred eEEcCCCHHHHHHHHHHHHhCCCcEEE--ecCCCCCCCCcccCCCcEEEEc
Q psy6765 185 LVLKPKTTEEVSAILRYCNEQKIAVCP--QGGNTGVVAGGVPLYDEVIVSA 233 (246)
Q Consensus 185 ~vv~P~s~~~v~~~v~~a~~~~~~~~~--~ggG~~~~~~~~~~~~gv~idl 233 (246)
.-+.-.+.+++.++.+.+.++++++.. ...+++.......+.+|..|.+
T Consensus 74 i~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 74 LAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEI 124 (125)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEe
Confidence 344556789999999999999998874 2233333222333445655543
No 143
>PRK06683 hypothetical protein; Provisional
Probab=33.61 E-value=67 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCccEEEeCCCHHH--HHHHHHHHHhCCCcEEEecCCC
Q psy6765 63 EGKSKLVLKPKTTEE--VSAILRYCNEQKIAVCPQGGNT 99 (246)
Q Consensus 63 ~~~p~~vv~P~s~~e--v~~~v~~a~~~~i~v~~~GgG~ 99 (246)
.+.+..|+..++.++ ...+..+|+.+++|+.......
T Consensus 25 ~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~ 63 (82)
T PRK06683 25 NGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVR 63 (82)
T ss_pred cCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 468888888887766 7788999999999998876433
No 144
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=33.51 E-value=68 Score=28.52 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=33.7
Q ss_pred cceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccc--CCCcEEEEcCCcCc
Q psy6765 183 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSASLMNK 238 (246)
Q Consensus 183 p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~--~~~gv~idl~~m~~ 238 (246)
+...+.|+|.+|..++++- +. .-.+.+|||.+....-. .....+||+++...
T Consensus 4 ~f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~e 57 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDE 57 (321)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChh
Confidence 3457899999998887663 32 23578999987322111 12369999986543
No 145
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=33.14 E-value=60 Score=28.25 Aligned_cols=51 Identities=18% Similarity=0.035 Sum_probs=34.2
Q ss_pred eEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCc-c-cCCCcEEEEcCCcCcc
Q psy6765 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG-V-PLYDEVIVSASLMNKI 239 (246)
Q Consensus 185 ~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~~~~~-~-~~~~gv~idl~~m~~i 239 (246)
-.+.|+|.+|..++++- +. ...+.+|||.+.... . ......+||+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL 58 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAEL 58 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhh
Confidence 57889999998888763 32 346789999983211 1 1133699999875544
No 146
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.11 E-value=88 Score=22.17 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=23.3
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
-.-+...+.+++.++++.+.++|+++..
T Consensus 73 hi~f~v~~~~~v~~~~~~l~~~g~~~~~ 100 (125)
T cd07241 73 HLAFSVGSKEAVDELTERLRADGYLIIG 100 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEe
Confidence 3556677889999999999999998764
No 147
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=32.63 E-value=52 Score=24.81 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=24.4
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEec
Q psy6765 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQG 96 (246)
Q Consensus 62 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~G 96 (246)
....|.|++.-++.+--..+++.|+++++|+..-.
T Consensus 78 ~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 78 FSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp CTTT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred hCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 56789999999999999999999999999987643
No 148
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=32.60 E-value=1.2e+02 Score=19.57 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=20.7
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCC
Q psy6765 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV 102 (246)
Q Consensus 69 vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~ 102 (246)
++...+.-++.-+-....++|||..+++.+.+..
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~ 36 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY 36 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S----SS
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh
Confidence 5667788899999999999999999998877664
No 149
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=32.33 E-value=28 Score=31.80 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=17.9
Q ss_pred EcCCCHHHHHHHHHHHHhCCCcEEEec
Q psy6765 187 LKPKTTEEVSAILRYCNEQKIAVCPQG 213 (246)
Q Consensus 187 v~P~s~~~v~~~v~~a~~~~~~~~~~g 213 (246)
+.|+..+++.++-|+|+++++|.+.=+
T Consensus 166 fapr~~D~i~~IakiC~~~~IPhlvNn 192 (389)
T PF05889_consen 166 FAPRLPDDIEEIAKICKEYDIPHLVNN 192 (389)
T ss_dssp TTTB----HHHHHHHHHHHT--EEEEG
T ss_pred cCCCCCccHHHHHHHHHHcCCceEEcc
Confidence 357788899999999999999998843
No 150
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=31.87 E-value=64 Score=25.20 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=25.4
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 62 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
..++|-+++.+...+++..+.+|+.+|++.+.-.
T Consensus 88 ~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~vLNV 121 (145)
T PF12694_consen 88 KHGKPCLHIDLSIPEAAAAVAEWLREHNIRVLNV 121 (145)
T ss_dssp HTT--EEEETS-HHHHHHHHHHHHHHTT--EEEE
T ss_pred HhCCCEEEEecCcccHHHHHHHHHHHCCceEEEe
Confidence 3679999999999999999999999999887654
No 151
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=31.72 E-value=43 Score=25.30 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=23.4
Q ss_pred ccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 179 ~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
....|.|++.-.+.+.-..+++.|+++++|+.--
T Consensus 78 ~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 78 FSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp CTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred hCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 3568889999999999999999999999999864
No 152
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.70 E-value=75 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.178 Sum_probs=22.9
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
-++-++....++.++++.++++|.+++..
T Consensus 52 i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 52 IALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 33445677889999999999999987654
No 153
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=31.47 E-value=73 Score=23.23 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=29.5
Q ss_pred cCccce-EEcCCCHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 180 SGKSKL-VLKPKTTEEVSAILRYCNEQKIAVCPQGGN 215 (246)
Q Consensus 180 ~~~p~~-vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG 215 (246)
...|.. ++.+....|+..++.+|.+.|+|+-..+.-
T Consensus 53 RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 53 RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred hcCCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 345655 677778899999999999999999988654
No 154
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=31.40 E-value=74 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=26.2
Q ss_pred Cccc-eEEcCCCHHHHHHHHHHHHh--CCCcEEEec
Q psy6765 181 GKSK-LVLKPKTTEEVSAILRYCNE--QKIAVCPQG 213 (246)
Q Consensus 181 ~~p~-~vv~P~s~~~v~~~v~~a~~--~~~~~~~~g 213 (246)
..|. .|+.|.+.+|+..+++++-+ .+-|++++-
T Consensus 135 ~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~ 170 (178)
T PF02779_consen 135 SIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIRE 170 (178)
T ss_dssp TSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEE
T ss_pred cccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4454 59999999999999999988 567887764
No 155
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=31.30 E-value=1.6e+02 Score=27.16 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 64 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 64 ~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
.....|+.|+..|-..++-+.|+++|+++..|+.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 35678999999999999999999999999999988
No 156
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=31.04 E-value=71 Score=24.95 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=26.2
Q ss_pred cCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecC
Q psy6765 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG 214 (246)
Q Consensus 180 ~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~gg 214 (246)
..+|..++.+...+++..+.+|..+|++.+.-..|
T Consensus 89 ~~KP~l~i~~~~~~~~~~v~~wl~~~~i~vLNVAG 123 (145)
T PF12694_consen 89 HGKPCLHIDLSIPEAAAAVAEWLREHNIRVLNVAG 123 (145)
T ss_dssp TT--EEEETS-HHHHHHHHHHHHHHTT--EEEEE-
T ss_pred hCCCEEEEecCcccHHHHHHHHHHHCCceEEEecc
Confidence 46888999999999999999999999999998765
No 157
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=30.60 E-value=13 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.553 Sum_probs=21.9
Q ss_pred ccEEEeCCC-----HHHHHHHHHHHHhCCCcEEE-ecCCCCC
Q psy6765 66 SKLVLKPKT-----TEEVSAILRYCNEQKIAVCP-QGGNTGV 101 (246)
Q Consensus 66 p~~vv~P~s-----~~ev~~~v~~a~~~~i~v~~-~GgG~~~ 101 (246)
...+|.|.+ .+||..++..+.++.+-|.| ||||||.
T Consensus 89 ~~vlvl~aDLPll~~~dl~~~l~~~~~~~vviap~r~gGTN~ 130 (217)
T PF01983_consen 89 DPVLVLPADLPLLTPEDLDALLAAAGRADVVIAPDRGGGTNA 130 (217)
T ss_dssp S-EEEE-S--TT--HHHHHHHCT-SS--SEEEEE-GGG-EEE
T ss_pred CceEEeecCCccCCHHHHHHHHhccCCCCEEEeCCCCCCeEE
Confidence 345566664 69999999998877766666 7888876
No 158
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=30.51 E-value=2.6e+02 Score=24.42 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEe
Q psy6765 191 TTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 191 s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
+.-|+.+++......++|++..
T Consensus 89 s~~D~aK~ia~~~~~~~p~i~i 110 (332)
T cd07766 89 STLDTAKAVAALLNRGLPIIIV 110 (332)
T ss_pred hHHHHHHHHHHHhcCCCCEEEE
Confidence 4555555555444334444433
No 159
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=30.14 E-value=75 Score=28.62 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=28.5
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 63 EGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 63 ~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
...| .-|+.|.+.+|+..+++++.+++-|+.+|
T Consensus 161 r~iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir 194 (356)
T PLN02683 161 SSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFL 194 (356)
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4455 56889999999999999999888899997
No 160
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.95 E-value=77 Score=30.67 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=50.2
Q ss_pred CCCCccE-EEeCCCHHHHHHHHHHHHhCC-CcEEEe---cCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcC
Q psy6765 62 QEGKSKL-VLKPKTTEEVSAILRYCNEQK-IAVCPQ---GGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMS 136 (246)
Q Consensus 62 ~~~~p~~-vv~P~s~~ev~~~v~~a~~~~-i~v~~~---GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~a 136 (246)
..+.|-. |..|++++|++..+.++..++ -|+.+| |.|.+. ..... .-.++..+ -. -+......+.+.=
T Consensus 437 l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~---~~~~~-~~~~~~Gk-~~--i~~~G~~vail~~ 509 (627)
T COG1154 437 LRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGV---ILTPE-LEPLEIGK-GE--LLKEGEKVAILAF 509 (627)
T ss_pred HhcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCC---Ccccc-cccccccc-eE--EEecCCcEEEEec
Confidence 3667754 667999999999999999998 699774 655444 11111 12233333 11 1223455666777
Q ss_pred CccHHH---HHHHHhhcCc
Q psy6765 137 NALVTN---RSLELSNTGV 152 (246)
Q Consensus 137 G~~~~~---l~~~L~~~gl 152 (246)
|..... +.+.|.++|+
T Consensus 510 G~~~~~al~vae~L~~~Gi 528 (627)
T COG1154 510 GTMLPEALKVAEKLNAYGI 528 (627)
T ss_pred chhhHHHHHHHHHHHhcCC
Confidence 766653 4445555655
No 161
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=29.80 E-value=94 Score=23.48 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=36.8
Q ss_pred ccEEEeCCCHHH-HHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCC
Q psy6765 66 SKLVLKPKTTEE-VSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDEL 128 (246)
Q Consensus 66 p~~vv~P~s~~e-v~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~ 128 (246)
..++.. .+..| +.++.+.|.+.|+|+...|++..- .+| .|.|.+...-.++|++
T Consensus 27 ~~vv~~-~~i~dL~~~~~~ic~ergiPIe~I~~~k~k---~~p-----~v~LkHt~~k~~~d~~ 81 (121)
T PF13611_consen 27 KQVVAN-NEIDDLVREVTEICCERGIPIEIIDKKKRK---AFP-----RVPLKHTFGKISKDGE 81 (121)
T ss_pred cceEec-CcHHHHHHHHHHHHHHcCCCEEEecCccee---ccc-----eEecceeecccccCcc
Confidence 344555 44444 567889999999999999988877 343 4777775543355543
No 162
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.68 E-value=1.4e+02 Score=26.78 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCC----CCCCCCcccCCCeEEEec-C--CCCCceee-eCCCCeEEE
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGN----TGVVAGGVPLYDEVIVSA-S--LMNKILNF-DELSGNVNS 134 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG----~~~~g~~~~~~~gvvidl-~--~m~~i~~i-d~~~~~v~v 134 (246)
.....+|+=|.+......+-.+|.+.+||.+.-+.- +.+.-...|.-.+.++++ . +.+++.-+ |.++..
T Consensus 61 ~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vaiiYd~~~~~--- 137 (371)
T cd06388 61 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNRFVFLYDTDRGY--- 137 (371)
T ss_pred hCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCceEEEEEecCCccH---
Confidence 455788999999999999999999999998853311 111000001101112221 1 12333222 222211
Q ss_pred cCCccHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcE
Q psy6765 135 MSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAV 209 (246)
Q Consensus 135 ~aG~~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~ 209 (246)
..+.++.+.+.+.|..+.....+.. .+. +.+..... .-...++.|+.+.+.+++..+++-+++.|+.-
T Consensus 138 ---~~lq~l~~~~~~~g~~v~~~~~~~~--~~~-d~~~~L~~-ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~ 205 (371)
T cd06388 138 ---SILQAIMEKAGQNGWQVSAICVENF--NDA-SYRRLLED-LDRRQEKKFVIDCEIERLQNILEQIVSVGKHV 205 (371)
T ss_pred ---HHHHHHHHhhHhcCCeeeeEEeccC--CcH-HHHHHHHH-hcccccEEEEEECCHHHHHHHHHHHHhcCccc
Confidence 2355677777777755432111100 010 11112111 11247899999999999999999999998854
No 163
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.49 E-value=4.2e+02 Score=23.80 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.7
Q ss_pred cceEEcCCCHHHHHHHHHHHHhCCCcEEEec-CCCCCC
Q psy6765 183 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQG-GNTGVV 219 (246)
Q Consensus 183 p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~g-gG~~~~ 219 (246)
|..=+.|.+.+++.++.++..++++++.+|- .|.-..
T Consensus 295 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~ 332 (348)
T PRK14467 295 PELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIF 332 (348)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchh
Confidence 3344578899999999999999999999983 455543
No 164
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=29.09 E-value=60 Score=24.19 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=29.0
Q ss_pred CccceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCC
Q psy6765 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG 217 (246)
Q Consensus 181 ~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~ 217 (246)
..+++++--++++.+...+++|.++++|++.--.|.+
T Consensus 66 ~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 66 EEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp TH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred ccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 3489999999999999999999999999999666654
No 165
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.72 E-value=66 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHh------CCCcEEEecCCCCC
Q psy6765 190 KTTEEVSAILRYCNE------QKIAVCPQGGNTGV 218 (246)
Q Consensus 190 ~s~~~v~~~v~~a~~------~~~~~~~~ggG~~~ 218 (246)
..++++...++.+++ ..+-++.||||+--
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 467888888988875 45788899999743
No 166
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=28.51 E-value=99 Score=23.38 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=34.5
Q ss_pred EEcCCCHHH-HHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCcEEEEcCCcCcceeccC
Q psy6765 186 VLKPKTTEE-VSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244 (246)
Q Consensus 186 vv~P~s~~~-v~~~v~~a~~~~~~~~~~ggG~~~~~~~~~~~~gv~idl~~m~~i~~~d~ 244 (246)
+.. .+..| +.++.++|.+.|+|+...|++..- ..| .|.|+++..-++.|+
T Consensus 30 v~~-~~i~dL~~~~~~ic~ergiPIe~I~~~k~k---~~p-----~v~LkHt~~k~~~d~ 80 (121)
T PF13611_consen 30 VAN-NEIDDLVREVTEICCERGIPIEIIDKKKRK---AFP-----RVPLKHTFGKISKDG 80 (121)
T ss_pred Eec-CcHHHHHHHHHHHHHHcCCCEEEecCccee---ccc-----eEecceeecccccCc
Confidence 555 34444 566778999999999999999887 222 377777665444553
No 167
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.51 E-value=1.1e+02 Score=22.37 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=29.1
Q ss_pred ceEEcCCCHHHHHHHHHHHHhCCCcEEEecCCCCC
Q psy6765 184 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGV 218 (246)
Q Consensus 184 ~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ggG~~~ 218 (246)
-++=++....++.++++.|++++++++...+.++-
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 44556778899999999999999999999876554
No 168
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=28.36 E-value=3.9e+02 Score=23.01 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=74.8
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecC-----------------C--CCCcee
Q psy6765 64 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSAS-----------------L--MNKILN 124 (246)
Q Consensus 64 ~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~-----------------~--m~~i~~ 124 (246)
..+.+|+-|.+......+..++.++++|++.-+..+.... ......+..+. . .+++--
T Consensus 70 ~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (345)
T cd06338 70 DKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGASDSIF---AQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAI 146 (345)
T ss_pred cCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCCchHh---hcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEE
Confidence 3678899999988899999999999999987665443210 00001111110 1 233322
Q ss_pred eeCCCCeEEEcCCc-cHHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHH
Q psy6765 125 FDELSGNVNSMSNA-LVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCN 203 (246)
Q Consensus 125 id~~~~~v~v~aG~-~~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~ 203 (246)
+..++. -|. ....+.+.+.+.|..+.....+.....| ...... .-....|++|+.....++...+++-++
T Consensus 147 v~~~~~-----~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d---~~~~v~-~l~~~~~d~i~~~~~~~~~~~~~~~~~ 217 (345)
T cd06338 147 LYADDP-----FSQDVAEGAREKAEAAGLEVVYDETYPPGTAD---LSPLIS-KAKAAGPDAVVVAGHFPDAVLLVRQMK 217 (345)
T ss_pred EecCCc-----ccHHHHHHHHHHHHHcCCEEEEEeccCCCccc---hHHHHH-HHHhcCCCEEEECCcchhHHHHHHHHH
Confidence 211110 111 2244556666777655321111111000 011111 011346899999999999999999999
Q ss_pred hCCCcEEEe
Q psy6765 204 EQKIAVCPQ 212 (246)
Q Consensus 204 ~~~~~~~~~ 212 (246)
+.++.....
T Consensus 218 ~~g~~~~~~ 226 (345)
T cd06338 218 ELGYNPKAL 226 (345)
T ss_pred HcCCCCCEE
Confidence 988754333
No 169
>smart00642 Aamy Alpha-amylase domain.
Probab=28.32 E-value=72 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
.+.+|++++++.|+++|+.|..
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5889999999999999998876
No 170
>PRK06091 membrane protein FdrA; Validated
Probab=28.19 E-value=5.5e+02 Score=24.77 Aligned_cols=89 Identities=17% Similarity=0.001 Sum_probs=52.1
Q ss_pred EEEcCCccHHHHHHHHhhcCceeec--CCCchh----H-HhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHh
Q psy6765 132 VNSMSNALVTNRSLELSNTGVVVLG--VPLYDE----V-IVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNE 204 (246)
Q Consensus 132 v~v~aG~~~~~l~~~L~~~gl~~~~--~p~s~~----~-~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~ 204 (246)
+..+.|.....+...+...|+-|.. ..+-.. . -.+..+...+...+........+..|..++--.++++.+++
T Consensus 198 iVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~fl~aar~ 277 (555)
T PRK06091 198 VIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINAMKA 277 (555)
T ss_pred EEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHhh
Confidence 6788999888888888776664432 222110 0 11222334444444333444556667333333467777777
Q ss_pred CCCcEEEecCCCCCCC
Q psy6765 205 QKIAVCPQGGNTGVVA 220 (246)
Q Consensus 205 ~~~~~~~~ggG~~~~~ 220 (246)
.+.||+..=.|.+-.+
T Consensus 278 ~~KPVVvlk~Grs~~g 293 (555)
T PRK06091 278 TGKPVVALFLGYTPAV 293 (555)
T ss_pred CCCCEEEEEecCCchh
Confidence 8999999877776644
No 171
>PRK07714 hypothetical protein; Provisional
Probab=28.15 E-value=83 Score=22.59 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.0
Q ss_pred CCCccEEEeCCCHHH--HHHHHHHHHhCCCcEEEec
Q psy6765 63 EGKSKLVLKPKTTEE--VSAILRYCNEQKIAVCPQG 96 (246)
Q Consensus 63 ~~~p~~vv~P~s~~e--v~~~v~~a~~~~i~v~~~G 96 (246)
.+.+..|+.+.+..+ ..++.++|..+++|+...+
T Consensus 32 ~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~ 67 (100)
T PRK07714 32 SGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVE 67 (100)
T ss_pred hCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 456788888887544 8889999999999997654
No 172
>KOG3282|consensus
Probab=27.67 E-value=1.2e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.4
Q ss_pred cCccceEEcCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 211 (246)
Q Consensus 180 ~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~ 211 (246)
-++|..|+...++++..++.+-|++.+++...
T Consensus 122 ~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 122 CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 46999999999999999999999999986543
No 173
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.30 E-value=3e+02 Score=22.07 Aligned_cols=91 Identities=14% Similarity=0.022 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHH-HHHhCCCcEEEecCCCCC
Q psy6765 140 VTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILR-YCNEQKIAVCPQGGNTGV 218 (246)
Q Consensus 140 ~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~-~a~~~~~~~~~~ggG~~~ 218 (246)
+..+.+.|.++|+.+-..-++- ..-+|+......--+.++.+.++.-..++++ ++.+++++.-..--|+-.
T Consensus 5 l~~~~~~L~~~gv~~~ivGG~a--------v~l~~g~~r~T~DIDlfi~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~ 76 (181)
T PF09970_consen 5 LKEILEELNKRGVEYVIVGGAA--------VNLAYGRRRTTKDIDLFIENPSPNLEADALREVAEENGWDLGWTDFGTPR 76 (181)
T ss_pred HHHHHHHHHHcCCeEEEECHHH--------HHHHhCCCCCCCCeEEEeCCCchHHHHHHHHHHHHHcCCCcCccccCCCc
Confidence 3567788888887443222221 2223455556677888998888776665664 567888866443322221
Q ss_pred CCCcccCCCcEEEEc-CCcCcc
Q psy6765 219 VAGGVPLYDEVIVSA-SLMNKI 239 (246)
Q Consensus 219 ~~~~~~~~~gv~idl-~~m~~i 239 (246)
.-... ....+-||+ .++..+
T Consensus 77 ~~~~~-~~~~v~IDl~~ni~~~ 97 (181)
T PF09970_consen 77 YVVKV-GGEDVRIDLLENIGDF 97 (181)
T ss_pred eEEEe-CCCCeEEEchhccCCc
Confidence 11111 134688888 344444
No 174
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=27.27 E-value=55 Score=28.53 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
|-+.+|+.++-++|++|++|+..=|..
T Consensus 141 ~~s~~el~ai~~~a~~~gl~lhmDGAR 167 (290)
T PF01212_consen 141 VYSLEELRAISELAREHGLPLHMDGAR 167 (290)
T ss_dssp ---HHHHHHHHHHHHHHT-EEEEEETT
T ss_pred eCCHHHHHHHHHHHHhCceEEEEehhh
Confidence 457899999999999999999998874
No 175
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=27.18 E-value=88 Score=23.52 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCCccEEEeCCCHH--H-HHHHHHHHHhCCCcEEEecCCCCC
Q psy6765 63 EGKSKLVLKPKTTE--E-VSAILRYCNEQKIAVCPQGGNTGV 101 (246)
Q Consensus 63 ~~~p~~vv~P~s~~--e-v~~~v~~a~~~~i~v~~~GgG~~~ 101 (246)
.+.+..|+.+.+.+ + ...+..+|+++++|+...+.-.-+
T Consensus 44 kgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eL 85 (122)
T PRK04175 44 RGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDL 85 (122)
T ss_pred cCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 46788888888883 4 479999999999998877644333
No 176
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.78 E-value=1.1e+02 Score=23.72 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=26.2
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
-++-+....+++.++++.|+++|+|++...+.
T Consensus 84 i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 84 LGISTSGNSKNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34445778999999999999999999887653
No 177
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.64 E-value=60 Score=30.16 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=25.8
Q ss_pred ccEEEeCCC------HHHHHHHHHHHHhCC-C--cEEEecCCCC
Q psy6765 66 SKLVLKPKT------TEEVSAILRYCNEQK-I--AVCPQGGNTG 100 (246)
Q Consensus 66 p~~vv~P~s------~~ev~~~v~~a~~~~-i--~v~~~GgG~~ 100 (246)
...+++|.. .+||.++|+.+++.+ + =|+.||||+=
T Consensus 163 ~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi 206 (440)
T COG1570 163 VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSI 206 (440)
T ss_pred CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchH
Confidence 467777765 579999999999876 3 3555888863
No 178
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=26.49 E-value=1.2e+02 Score=25.62 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=29.3
Q ss_pred CccceEEcCCCHHHHHHHHHHHHh----CCCcEEEecCCC
Q psy6765 181 GKSKLVLKPKTTEEVSAILRYCNE----QKIAVCPQGGNT 216 (246)
Q Consensus 181 ~~p~~vv~P~s~~~v~~~v~~a~~----~~~~~~~~ggG~ 216 (246)
-.++.++.|++.+|+..++++..+ .+.|++..+-|.
T Consensus 157 Di~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~ 196 (238)
T PRK13575 157 EYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSK 196 (238)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 377899999999999999998543 467888888665
No 179
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.36 E-value=1.3e+02 Score=22.13 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.2
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEecC
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGG 97 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~Gg 97 (246)
-++-+....+|+.++++.|+++|.|++..-+
T Consensus 52 I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 52 ILASHSGNTKETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred EEEeCCCCChHHHHHHHHHHHcCCeEEEEEC
Confidence 3445577889999999999999999887644
No 180
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=26.23 E-value=81 Score=29.46 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCcEEE-ecCCCCCCCCccc-CCCeEEEe-------cCCCCCceeeeCCC--CeEEEcCC--ccHHHHH
Q psy6765 78 VSAILRYCNEQKIAVCP-QGGNTGVVAGGVP-LYDEVIVS-------ASLMNKILNFDELS--GNVNSMSN--ALVTNRS 144 (246)
Q Consensus 78 v~~~v~~a~~~~i~v~~-~GgG~~~~g~~~~-~~~gvvid-------l~~m~~i~~id~~~--~~v~v~aG--~~~~~l~ 144 (246)
-..+++.|++.|+..+. .+--...+- -+. .+..+.|+ .-++..++...... ..+.-+.| .....|.
T Consensus 14 a~ri~ra~~~lGi~tvav~s~~d~~~~-~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~fa 92 (449)
T COG0439 14 AVRIIRACRELGIETVAVYSEADADAL-HVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFA 92 (449)
T ss_pred HHHHHHHHHHhCCeEEEEeccccccch-hhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHHH
Confidence 34678888999886533 333332210 011 12245554 12233443333322 23445556 5567788
Q ss_pred HHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCC---HHHHHHHHHHHHhCCCcEEEec
Q psy6765 145 LELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKT---TEEVSAILRYCNEQKIAVCPQG 213 (246)
Q Consensus 145 ~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s---~~~v~~~v~~a~~~~~~~~~~g 213 (246)
+.+.+.|+.|.+-+...-...+. .+.....-.....=+-|.+ ..+..+..+++.+.|.|++.+-
T Consensus 93 e~~~~~gl~fiGP~~~~i~~mgd-----K~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa 159 (449)
T COG0439 93 EACAEAGLTFIGPSAEAIRRMGD-----KITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKA 159 (449)
T ss_pred HHHHHcCCeeeCcCHHHHHHhhh-----HHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEE
Confidence 89999998886644433221111 1111111111112233344 5666888999999999999874
No 181
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=26.17 E-value=3.8e+02 Score=22.77 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=28.6
Q ss_pred CccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCC
Q psy6765 65 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNT 99 (246)
Q Consensus 65 ~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~ 99 (246)
.+.+|+-|.+......+..++.++++|++.-+.+.
T Consensus 65 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~ 99 (333)
T cd06332 65 KVDVVVGPVFSNVALAVVPSLTESGTFLISPNAGP 99 (333)
T ss_pred CCcEEEcCCccHHHHHHHHHHhhcCCeEEecCCCC
Confidence 67889988777777788899999999988876554
No 182
>KOG0369|consensus
Probab=26.13 E-value=80 Score=31.17 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=48.4
Q ss_pred CCceeeeCCCCeEEEcCCccH----HHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHH
Q psy6765 120 NKILNFDELSGNVNSMSNALV----TNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEV 195 (246)
Q Consensus 120 ~~i~~id~~~~~v~v~aG~~~----~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v 195 (246)
+.|+++-.++..=.+.||.-+ .++.+++.+.|+.|-+ |+.+..-.-+.......-.. ..+.|-.==.|...+-+
T Consensus 96 deii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiG-PspeVi~~mGDKv~AR~~Ai-~agVpvVPGTpgPitt~ 173 (1176)
T KOG0369|consen 96 DEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIG-PSPEVIDSMGDKVAARAIAI-EAGVPVVPGTPGPITTV 173 (1176)
T ss_pred HHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeC-CCHHHHHHhhhHHHHHHHHH-HcCCCccCCCCCCcccH
Confidence 344444443333335555433 5688888888887743 33322200011111110000 11223222345567788
Q ss_pred HHHHHHHHhCCCcEEEec
Q psy6765 196 SAILRYCNEQKIAVCPQG 213 (246)
Q Consensus 196 ~~~v~~a~~~~~~~~~~g 213 (246)
.+++.|++++|.|+++..
T Consensus 174 ~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 174 EEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred HHHHHHHHhcCCcEEEee
Confidence 999999999999999863
No 183
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=25.86 E-value=1.4e+02 Score=24.40 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=30.3
Q ss_pred ceEEcCCCHHHHHHHHHHHHh-CCCcEEEecCCCCCCC
Q psy6765 184 KLVLKPKTTEEVSAILRYCNE-QKIAVCPQGGNTGVVA 220 (246)
Q Consensus 184 ~~vv~P~s~~~v~~~v~~a~~-~~~~~~~~ggG~~~~~ 220 (246)
...+.|.+.+++++.++-+.+ .++-+++..||++...
T Consensus 43 ~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~ 80 (193)
T PRK09417 43 ETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPAR 80 (193)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCC
Confidence 346779999999999987654 6889999999999853
No 184
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=25.75 E-value=3.2e+02 Score=24.08 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcCcee
Q psy6765 80 AILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVV 154 (246)
Q Consensus 80 ~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~gl~~ 154 (246)
.+.+.|++.|+.+++....-...+...+ +..++.+...-..+.++-.....++.+-........+.+.+.|..+
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~a-d~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~g~~~ 86 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVA-DHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEARGVKL 86 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhC-ceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhCCCeE
Confidence 4556778889988887553322121222 2234444333222222212223455554443344556666666543
No 185
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=25.61 E-value=3e+02 Score=24.51 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=76.8
Q ss_pred EEEeCC----CHHHHHHHHHHHHhCCC-cEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHH
Q psy6765 68 LVLKPK----TTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTN 142 (246)
Q Consensus 68 ~vv~P~----s~~ev~~~v~~a~~~~i-~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~ 142 (246)
.-..|+ |.||+..+++.+.+.|+ +|.+-||.=-+ ..++.-=..++.+. .+ ......--|+.+..
T Consensus 34 ~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-------R~dl~eIi~~l~~~-~~---~~islTTNG~~L~~ 102 (322)
T COG2896 34 LAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-------RKDLDEIIARLARL-GI---RDLSLTTNGVLLAR 102 (322)
T ss_pred cccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-------hcCHHHHHHHHhhc-cc---ceEEEecchhhHHH
Confidence 456676 79999999999999776 56666665444 11111001233332 11 11222346888888
Q ss_pred HHHHHhhcCceeec---CCCchh---HHhhHHhhhhhh-c---cccc---cCccceEEcCC-CHHHHHHHHHHHHhCCCc
Q psy6765 143 RSLELSNTGVVVLG---VPLYDE---VIVSASLMNKIL-N---FDEL---SGKSKLVLKPK-TTEEVSAILRYCNEQKIA 208 (246)
Q Consensus 143 l~~~L~~~gl~~~~---~p~s~~---~~~~~~~~~~~~-~---~~~~---~~~p~~vv~P~-s~~~v~~~v~~a~~~~~~ 208 (246)
..+.|.+.|+.--+ +.-... ..++.....+-. + .... ..+-..|+.+. +.+|+..+++|++..++.
T Consensus 103 ~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~ 182 (322)
T COG2896 103 RAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQ 182 (322)
T ss_pred HHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCc
Confidence 88999888873321 111111 000000000000 0 0011 13456777776 999999999999998864
Q ss_pred -----EEEecCCCCC
Q psy6765 209 -----VCPQGGNTGV 218 (246)
Q Consensus 209 -----~~~~ggG~~~ 218 (246)
+.|.|.+.++
T Consensus 183 lrfIE~m~~g~~~~~ 197 (322)
T COG2896 183 LRFIELMPLGEGNSW 197 (322)
T ss_pred eEEEEEeecCcccch
Confidence 4566654433
No 186
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.14 E-value=62 Score=29.96 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=25.5
Q ss_pred cEEEeCCC------HHHHHHHHHHHHhC---CCcEEEecCCCCC
Q psy6765 67 KLVLKPKT------TEEVSAILRYCNEQ---KIAVCPQGGNTGV 101 (246)
Q Consensus 67 ~~vv~P~s------~~ev~~~v~~a~~~---~i~v~~~GgG~~~ 101 (246)
..+++|.. +.+|.++++.+++. ++=|+.||||+--
T Consensus 158 ~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~e 201 (432)
T TIGR00237 158 KVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLE 201 (432)
T ss_pred eEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHH
Confidence 56677754 58899999888863 4557779998854
No 187
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=25.09 E-value=1.1e+02 Score=27.22 Aligned_cols=87 Identities=15% Similarity=0.017 Sum_probs=49.7
Q ss_pred CCCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCC-CcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCcc
Q psy6765 62 QEGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVA-GGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNAL 139 (246)
Q Consensus 62 ~~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g-~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~ 139 (246)
....| .-|+.|.+.+|...+++++.+.+-|+.++=.+.-+.. .-++.+ .--+. +.+...+.+......+.-|..
T Consensus 137 ~r~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~~~~~~~-~~~~~---~Gk~~vl~~G~di~iva~G~~ 212 (327)
T PRK09212 137 YSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHSHEVPEE-EESIP---IGKAAILREGSDVTIVTFSIQ 212 (327)
T ss_pred HhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEEEchhhcCCCCCCCCC-Ccccc---CCeeEEEEeCCCEEEEEccHH
Confidence 35556 4588899999999999999998889998543322210 011111 00111 122212333445566777777
Q ss_pred HHHHHHH---HhhcCc
Q psy6765 140 VTNRSLE---LSNTGV 152 (246)
Q Consensus 140 ~~~l~~~---L~~~gl 152 (246)
.....++ |.+.|+
T Consensus 213 ~~~a~eAa~~L~~~Gi 228 (327)
T PRK09212 213 VKLALEAAELLEKEGI 228 (327)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7665444 444554
No 188
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=25.07 E-value=97 Score=22.86 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 75 TEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 75 ~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
.+.+..+++-+.+.+++++.||=-
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~ 33 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFP 33 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCC
Confidence 578999999999999999999843
No 189
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=24.79 E-value=83 Score=24.72 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=28.3
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCcEEE-ecCCCCCC
Q psy6765 69 VLKPKTTEEVSAILRYCNEQKIAVCP-QGGNTGVV 102 (246)
Q Consensus 69 vv~P~s~~ev~~~v~~a~~~~i~v~~-~GgG~~~~ 102 (246)
=+-|++.+-++..+++++.+++||.+ ...|..+.
T Consensus 9 Evwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~ 43 (165)
T PF03614_consen 9 EVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFC 43 (165)
T ss_pred ccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEE
Confidence 35699999999999999999999987 55666553
No 190
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=24.25 E-value=1.6e+02 Score=28.47 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCceeec-CCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEec
Q psy6765 140 VTNRSLELSNTGVVVLG-VPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQG 213 (246)
Q Consensus 140 ~~~l~~~L~~~gl~~~~-~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~g 213 (246)
+.+|.+++.+.|+.|-+ .|.+-.. -|.....+... .-.+.|..==+....++...+++++.++|.|+.++.
T Consensus 88 Na~FA~a~~~aGlvfIGP~~~aI~a-MGdK~~AK~l~--~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKA 159 (645)
T COG4770 88 NADFAQAVEDAGLVFIGPSAGAIRA-MGDKIAAKKLA--AEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159 (645)
T ss_pred CHHHHHHHHHCCcEEECCCHHHHHH-hccHHHHHHHH--HHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEe
Confidence 36788888889987754 3333222 11111111111 011233333345667889999999999999999984
No 191
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=24.06 E-value=1.3e+02 Score=27.98 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEE---ecCCCCC
Q psy6765 74 TTEEVSAILRYCNEQKIAVCP---QGGNTGV 101 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~---~GgG~~~ 101 (246)
..+++.++.++|+++++++.+ .|.++..
T Consensus 220 ~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~ 250 (444)
T TIGR03531 220 SPDDIEEIAKICANYDIPHIVNNAYGLQSNK 250 (444)
T ss_pred chhCHHHHHHHHHHcCCEEEEECcCcCcChh
Confidence 689999999999999999988 5654433
No 192
>PRK06256 biotin synthase; Validated
Probab=23.89 E-value=4.9e+02 Score=22.75 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHhCCC-cEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhc
Q psy6765 72 PKTTEEVSAILRYCNEQKI-AVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNT 150 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i-~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~ 150 (246)
-.+.+||.+.++.+.+.|. .+...++|........ + -++++ +..|.+. -...+.+..|....+..+.|.+.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~--~--~~~e~--i~~i~~~--~~i~~~~~~g~l~~e~l~~Lkea 161 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEV--D--QVVEA--VKAIKEE--TDLEICACLGLLTEEQAERLKEA 161 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHH--H--HHHHH--HHHHHhc--CCCcEEecCCcCCHHHHHHHHHh
Confidence 3689999999999998886 4666676665522100 0 01111 1111110 12234566787888888999888
Q ss_pred Cce-eecCCCchhHHhhHHhhhhhhccc----------c--ccCccceEE-cCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 151 GVV-VLGVPLYDEVIVSASLMNKILNFD----------E--LSGKSKLVL-KPKTTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 151 gl~-~~~~p~s~~~~~~~~~~~~~~~~~----------~--~~~~p~~vv-~P~s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
|+. +.....++..... . ....+++. . +......++ ..++.+|+...+++.++.+...++.
T Consensus 162 G~~~v~~~lEts~~~~~-~-i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i 235 (336)
T PRK06256 162 GVDRYNHNLETSRSYFP-N-VVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI 235 (336)
T ss_pred CCCEEecCCccCHHHHh-h-cCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee
Confidence 862 3222222111111 0 01111111 0 112223344 4688999999999988887654443
No 193
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=23.73 E-value=4.3e+02 Score=23.34 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=14.6
Q ss_pred ccceEE--cCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 182 KSKLVL--KPKTTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 182 ~p~~vv--~P~s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
.+++|+ ==.++-|+.+.+.+. .++|++..
T Consensus 80 ~~d~IIaIGGGs~~D~aK~vA~~--~~~p~i~I 110 (348)
T cd08175 80 DTDLIIAVGSGTINDITKYVSYK--TGIPYISV 110 (348)
T ss_pred cCCEEEEECCcHHHHHHHHHHHh--cCCCEEEe
Confidence 344443 234666666666643 34554443
No 194
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=23.58 E-value=58 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=18.0
Q ss_pred eCCCHHHHHHHHHHHHhCCCcEEEec
Q psy6765 71 KPKTTEEVSAILRYCNEQKIAVCPQG 96 (246)
Q Consensus 71 ~P~s~~ev~~~v~~a~~~~i~v~~~G 96 (246)
.|+..++|.++=++|++++||..+-+
T Consensus 167 apr~~D~i~~IakiC~~~~IPhlvNn 192 (389)
T PF05889_consen 167 APRLPDDIEEIAKICKEYDIPHLVNN 192 (389)
T ss_dssp TTB----HHHHHHHHHHHT--EEEEG
T ss_pred CCCCCccHHHHHHHHHHcCCceEEcc
Confidence 38888899999999999999999975
No 195
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=23.52 E-value=1.9e+02 Score=21.46 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCccceEEcCCCHHHHHHHHHHHHhCCCcE-EEecCCCC
Q psy6765 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAV-CPQGGNTG 217 (246)
Q Consensus 180 ~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~-~~~ggG~~ 217 (246)
.+.+..|+...++++...+.+-+.+.+++. .++-.|+.
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 468899999999999999999999999874 55566654
No 196
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=23.51 E-value=1.5e+02 Score=25.10 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.6
Q ss_pred CccEEEeCCCHHHHHHHHHHHHh----CCCcEEEecCCC
Q psy6765 65 KSKLVLKPKTTEEVSAILRYCNE----QKIAVCPQGGNT 99 (246)
Q Consensus 65 ~p~~vv~P~s~~ev~~~v~~a~~----~~i~v~~~GgG~ 99 (246)
.++.++.|++.+|+.+++++..+ .+.|++..+-|-
T Consensus 158 i~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~ 196 (238)
T PRK13575 158 YVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSK 196 (238)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 56889999999999999998654 345766665443
No 197
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=23.37 E-value=1.4e+02 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=24.4
Q ss_pred ceEEcCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 184 KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 212 (246)
Q Consensus 184 ~~vv~P~s~~~v~~~v~~a~~~~~~~~~~ 212 (246)
..|+.|.+..|...+++.+.+++=|++.+
T Consensus 136 ~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 136 LKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 45899999999999999998887777653
No 198
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.28 E-value=1.5e+02 Score=21.68 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.9
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCC
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGV 101 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~ 101 (246)
-++=+..+..|+.++++.|+++|++++..-+...+
T Consensus 48 I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l 82 (119)
T cd05017 48 IAVSYSGNTEETLSAVEQAKERGAKIVAITSGGKL 82 (119)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 33445778899999999999999998876544333
No 199
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=23.20 E-value=1.1e+02 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=26.8
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCC
Q psy6765 66 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNT 99 (246)
Q Consensus 66 p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~ 99 (246)
+++++.-.+.+.+...+++|.++++|+++---|.
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred CCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 8899999999999999999999999998855444
No 200
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.96 E-value=1.5e+02 Score=22.38 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=52.0
Q ss_pred cHHHHHHHHhhcCceeecCCCc----hhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEEecC
Q psy6765 139 LVTNRSLELSNTGVVVLGVPLY----DEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG 214 (246)
Q Consensus 139 ~~~~l~~~L~~~gl~~~~~p~s----~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~~gg 214 (246)
....+.+.|...|+.+...+.. ..-.+|-.....-.. ......+++++.-+.-.|...+++.++++|+++...|-
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~-~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~ 131 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALE-LAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGF 131 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHH-HhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEcc
Confidence 4567888888888877655532 222223332222111 11223688999999999999999999999999999987
Q ss_pred CCC
Q psy6765 215 NTG 217 (246)
Q Consensus 215 G~~ 217 (246)
..+
T Consensus 132 ~~~ 134 (149)
T cd06167 132 EAK 134 (149)
T ss_pred Ccc
Confidence 633
No 201
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.76 E-value=74 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
.|.+|++++|+.|+++||.|+.
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhhhhhhhhccccccceEEE
Confidence 4789999999999999999876
No 202
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.56 E-value=1.1e+02 Score=27.63 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=28.4
Q ss_pred EeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCC
Q psy6765 70 LKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVA 103 (246)
Q Consensus 70 v~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g 103 (246)
..|.=.+++..++..|.+++|||++-+||.|..+
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~ 85 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAG 85 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHH
Confidence 3344567999999999999999999998888754
No 203
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=22.56 E-value=1.4e+02 Score=23.79 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCCccEEEeCCC--HHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 63 EGKSKLVLKPKT--TEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 63 ~~~p~~vv~P~s--~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
..+|..||=|.- +|.+..++|++.+.++|++.-|.-
T Consensus 35 AkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~ 72 (170)
T COG1880 35 AKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASS 72 (170)
T ss_pred cCCceEEecccccCHHHHHHHHHHHHhcCCceEecchh
Confidence 468889998875 467788899999999999987643
No 204
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=22.50 E-value=1.3e+02 Score=26.75 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=29.0
Q ss_pred CCCCccE-EEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 62 QEGKSKL-VLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 62 ~~~~p~~-vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
....|.. |+.|.+..|...+++.+.+.+-|+.+|
T Consensus 137 ~~~iPgl~V~~Psd~~d~~~~l~~a~~~~~Pv~ir 171 (327)
T CHL00144 137 FQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFF 171 (327)
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3555644 888999999999999999988899986
No 205
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.37 E-value=1.4e+02 Score=19.86 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 68 LVLKPKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 68 ~vv~P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
.+-.+.+.+++.++++|.+++++.+-+
T Consensus 49 ~l~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 49 ILELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence 355589999999999999999987654
No 206
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=22.34 E-value=1.7e+02 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.3
Q ss_pred EEEeCCCHHHHHHHHHHHHh-CCCcEEEecCCCCC
Q psy6765 68 LVLKPKTTEEVSAILRYCNE-QKIAVCPQGGNTGV 101 (246)
Q Consensus 68 ~vv~P~s~~ev~~~v~~a~~-~~i~v~~~GgG~~~ 101 (246)
..+.|.+.+++++.++-+.+ .+.-+++-.||++.
T Consensus 44 ~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~ 78 (193)
T PRK09417 44 TRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGP 78 (193)
T ss_pred EEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 35679999999999988765 46778999999998
No 207
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=22.30 E-value=80 Score=28.33 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 74 TTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
+.+|+.+|-++|+++++|+..=|..
T Consensus 148 ~l~el~~i~~~~k~~~l~LHmDGAR 172 (342)
T COG2008 148 PLDELEAISAVCKEHGLPLHMDGAR 172 (342)
T ss_pred CHHHHHHHHHHHHHhCCceeechHH
Confidence 4799999999999999999987654
No 208
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.27 E-value=1.6e+02 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=24.5
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 69 vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
+=+.....|+.++++.|+++|.+++...+.
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 334667789999999999999999887554
No 209
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=22.20 E-value=1.5e+02 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.6
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHh---CCCcEEEecCCC
Q psy6765 64 GKSKLVLKPKTTEEVSAILRYCNE---QKIAVCPQGGNT 99 (246)
Q Consensus 64 ~~p~~vv~P~s~~ev~~~v~~a~~---~~i~v~~~GgG~ 99 (246)
-.++.++.|.+.+|+-.++++-++ .+.|++..+-|.
T Consensus 148 DivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~ 186 (231)
T COG0710 148 DIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGK 186 (231)
T ss_pred CeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCC
Confidence 467889999999999999999997 466666655443
No 210
>KOG1342|consensus
Probab=22.16 E-value=98 Score=28.23 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCC
Q psy6765 74 TTEEVSAILRYCNEQKIAVCPQGGN 98 (246)
Q Consensus 74 s~~ev~~~v~~a~~~~i~v~~~GgG 98 (246)
|.....++|++.++.++|+.+.|||
T Consensus 276 si~Gh~~Cv~fvksfn~pllvlGGG 300 (425)
T KOG1342|consen 276 SIKGHAECVKFVKSFNLPLLVLGGG 300 (425)
T ss_pred cchhHHHHHHHHHHcCCcEEEecCC
Confidence 6788899999999999999998776
No 211
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=21.93 E-value=80 Score=26.07 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.4
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHhCC----CcEEEecCCC
Q psy6765 64 GKSKLVLKPKTTEEVSAILRYCNEQK----IAVCPQGGNT 99 (246)
Q Consensus 64 ~~p~~vv~P~s~~ev~~~v~~a~~~~----i~v~~~GgG~ 99 (246)
-..+.++.|.+.+|+.+++++..+.+ .|++..+-|-
T Consensus 145 divKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~ 184 (224)
T PF01487_consen 145 DIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGE 184 (224)
T ss_dssp SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETG
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCC
Confidence 35688999999999999999987654 8888876554
No 212
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=21.80 E-value=94 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=27.5
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCcE-EEecCCCCC
Q psy6765 67 KLVLKPKTTEEVSAILRYCNEQKIAV-CPQGGNTGV 101 (246)
Q Consensus 67 ~~vv~P~s~~ev~~~v~~a~~~~i~v-~~~GgG~~~ 101 (246)
.++++|.-.++|.++++-+--.++.+ .++|-|..-
T Consensus 2 ~aIir~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~ 37 (102)
T PF00543_consen 2 EAIIRPEKLEEVIEALREAGVPGMTVSEVRGRGRQK 37 (102)
T ss_dssp EEEEEGGGHHHHHHHHHHTTGSCEEEEEEEEESSTT
T ss_pred EEEEChhHHHHHHHHHHHCCCCeEEEEEeEEecccc
Confidence 47999999999999999988777766 446655544
No 213
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=21.46 E-value=3e+02 Score=25.35 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEecC
Q psy6765 75 TEEVSAILRYCNEQKIAVCPQGG 97 (246)
Q Consensus 75 ~~ev~~~v~~a~~~~i~v~~~Gg 97 (246)
-+--..+++.|++.|+.+++...
T Consensus 11 g~~~~~~~~aa~~lG~~vv~~~~ 33 (449)
T TIGR00514 11 GEIALRILRACKELGIKTVAVHS 33 (449)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEC
Confidence 34456789999999999988754
No 214
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.44 E-value=93 Score=28.93 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=69.0
Q ss_pred CccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCCCCeEEEcCCcc---HH
Q psy6765 65 KSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNVNSMSNAL---VT 141 (246)
Q Consensus 65 ~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~~~~v~v~aG~~---~~ 141 (246)
.-.|+++-.+.. -+++--++|..|.++|.=+-|.+.. +.-++++ .|. + .+-|.. +.
T Consensus 53 ~i~c~mf~~~~~----~l~f~p~eG~~V~v~G~is~Y~~rG---~YQi~~~--~~~------p------~G~G~L~~~~E 111 (440)
T COG1570 53 QIRCVMFKGNNR----RLKFRPEEGMQVLVRGKISLYEPRG---DYQIVAE--SME------P------AGLGALYLAFE 111 (440)
T ss_pred eEEEEEEcCccc----ccCCCccCCCEEEEEEEEEEEcCCC---ceEEEEe--cCC------c------CChhHHHHHHH
Confidence 335555555433 3446678899999998777774321 1134443 221 1 233433 34
Q ss_pred HHHHHHhhcCce-------eecCCCchhHH---hhHHhhhhhhccccccCccceEEcCC------CHHHHHHHHHHHHhC
Q psy6765 142 NRSLELSNTGVV-------VLGVPLYDEVI---VSASLMNKILNFDELSGKSKLVLKPK------TTEEVSAILRYCNEQ 205 (246)
Q Consensus 142 ~l~~~L~~~gl~-------~~~~p~s~~~~---~~~~~~~~~~~~~~~~~~p~~vv~P~------s~~~v~~~v~~a~~~ 205 (246)
++.+.|...|++ +|..|.--.+. +++.+.--.+.-..-......+++|+ ..+++.+.++.+++.
T Consensus 112 ~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~ 191 (440)
T COG1570 112 QLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQR 191 (440)
T ss_pred HHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhcc
Confidence 566677767763 34444431111 11111110111111112245666665 567999999999876
Q ss_pred C---CcEEEecCCCC
Q psy6765 206 K---IAVCPQGGNTG 217 (246)
Q Consensus 206 ~---~~~~~~ggG~~ 217 (246)
+ +-|+.||||+-
T Consensus 192 ~~~DvlIVaRGGGSi 206 (440)
T COG1570 192 GDVDVLIVARGGGSI 206 (440)
T ss_pred CCCCEEEEecCcchH
Confidence 5 56677777764
No 215
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=21.39 E-value=84 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=21.6
Q ss_pred eCCCHHHHHHHHHHHHhCCCcEEEecCCC
Q psy6765 71 KPKTTEEVSAILRYCNEQKIAVCPQGGNT 99 (246)
Q Consensus 71 ~P~s~~ev~~~v~~a~~~~i~v~~~GgG~ 99 (246)
.+-+..+..++++||.++++-+++.|--.
T Consensus 44 ~~~~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 44 VPIDITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp E-S-TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCEEEECChH
Confidence 34488889999999999999999987433
No 216
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.37 E-value=1.7e+02 Score=24.84 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=30.0
Q ss_pred ccceEEcCCCHHHHHHHHHHHHh-----CCCcEEEecCCCC
Q psy6765 182 KSKLVLKPKTTEEVSAILRYCNE-----QKIAVCPQGGNTG 217 (246)
Q Consensus 182 ~p~~vv~P~s~~~v~~~v~~a~~-----~~~~~~~~ggG~~ 217 (246)
..+.++.|++.+|+..++++..+ .+.|++.++-|..
T Consensus 168 ivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~ 208 (253)
T PRK02412 168 IVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKL 208 (253)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 57889999999999999998753 5789999887763
No 217
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=21.27 E-value=3.5e+02 Score=23.11 Aligned_cols=82 Identities=13% Similarity=0.002 Sum_probs=53.0
Q ss_pred EEEcCCccHHHHHHHHhhc--Cc--eeecCCCchhHHhhHHhhhhhhc------cccccCccceEEcCCCHHHHHHHHHH
Q psy6765 132 VNSMSNALVTNRSLELSNT--GV--VVLGVPLYDEVIVSASLMNKILN------FDELSGKSKLVLKPKTTEEVSAILRY 201 (246)
Q Consensus 132 v~v~aG~~~~~l~~~L~~~--gl--~~~~~p~s~~~~~~~~~~~~~~~------~~~~~~~p~~vv~P~s~~~v~~~v~~ 201 (246)
..++.|.+-..+.+.+... .+ .+-.|...+.. ........ -+..-..++.+|...|.+.|.+.+--
T Consensus 4 giVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~----~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 4 GIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKA----KELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred EEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHH----HHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHH
Confidence 4578899988888888743 12 22223222221 11111111 11223678999999999999999999
Q ss_pred HHhCCCcEEEecCCCC
Q psy6765 202 CNEQKIAVCPQGGNTG 217 (246)
Q Consensus 202 a~~~~~~~~~~ggG~~ 217 (246)
+-+.|+.+++.+-|--
T Consensus 80 ~L~~g~d~iV~SVGAL 95 (255)
T COG1712 80 ILKAGIDVIVMSVGAL 95 (255)
T ss_pred HHhcCCCEEEEechhc
Confidence 9999999999887643
No 218
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=1.7e+02 Score=22.17 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 62 QEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 94 (246)
Q Consensus 62 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~ 94 (246)
..++.+.|++..+.+|+.++-+-|...|+|-.+
T Consensus 53 ~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~~~~ 85 (122)
T COG1990 53 REGQKKIVLKVGSLDELLELHQKAESLGLPTAL 85 (122)
T ss_pred HcCCceEEEEcCCHHHHHHHHHHHHHcCChHHH
Confidence 367999999999999999999999999987544
No 219
>PRK08462 biotin carboxylase; Validated
Probab=21.04 E-value=3.6e+02 Score=24.68 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCcEEEe
Q psy6765 78 VSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 78 v~~~v~~a~~~~i~v~~~ 95 (246)
-..+++.|++.|+.+++.
T Consensus 16 ~~~~~~~~~~~G~~~v~~ 33 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAI 33 (445)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 458999999999988776
No 220
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=21.02 E-value=1.4e+02 Score=24.77 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecC
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCPQGG 97 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~~Gg 97 (246)
++.+|+..+.+.|.++++++-|-||
T Consensus 161 ~~leE~~avAkA~a~~g~~lEPTGG 185 (218)
T PF07071_consen 161 KHLEELKAVAKACARNGFTLEPTGG 185 (218)
T ss_dssp TTHHHHHHHHHHHHHCT-EEEEBSS
T ss_pred ccHHHHHHHHHHHHHcCceeCCcCC
Confidence 5789999999999999998877653
No 221
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.97 E-value=2.1e+02 Score=26.47 Aligned_cols=77 Identities=8% Similarity=0.004 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEecCCCCCCCCcccCCC-eEEEe-cCCCCCceeeeCCCCeEEEcCCccHHHHHHHHh
Q psy6765 72 PKTTEEVSAILRYCNEQ-KIAVCPQGGNTGVVAGGVPLYD-EVIVS-ASLMNKILNFDELSGNVNSMSNALVTNRSLELS 148 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~-~i~v~~~GgG~~~~g~~~~~~~-gvvid-l~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~ 148 (246)
..+.+++.+++++.+++ ++.-+..+||=-+ ..++.- ..+|. +..+..|..+.-....-.+-|--...++.+.|.
T Consensus 137 ~ls~eei~~~i~yI~~~p~I~~VlLSGGDPL---ll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk 213 (417)
T TIGR03820 137 IPSKEQILEGIEYIRNTPQIRDVLLSGGDPL---LLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILK 213 (417)
T ss_pred cCCHHHHHHHHHHHHhcCCCCEEEEeCCccc---cCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHH
Confidence 34789999999999986 7777778777766 443211 11111 122222211211222222223344467888887
Q ss_pred hcC
Q psy6765 149 NTG 151 (246)
Q Consensus 149 ~~g 151 (246)
+.+
T Consensus 214 ~~~ 216 (417)
T TIGR03820 214 KHH 216 (417)
T ss_pred hcC
Confidence 765
No 222
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.92 E-value=1.3e+02 Score=22.33 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCCccEEEeCCCHH--H-HHHHHHHHHhCCCcEEEecCCCCC
Q psy6765 63 EGKSKLVLKPKTTE--E-VSAILRYCNEQKIAVCPQGGNTGV 101 (246)
Q Consensus 63 ~~~p~~vv~P~s~~--e-v~~~v~~a~~~~i~v~~~GgG~~~ 101 (246)
.+...+|+...+.+ + ...+..+|+++++|+...+.-.-+
T Consensus 40 kgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 40 RGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDL 81 (117)
T ss_pred cCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHH
Confidence 46778888888873 4 489999999999998877654444
No 223
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.77 E-value=1.9e+02 Score=20.92 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.4
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCcEEEecC
Q psy6765 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGG 97 (246)
Q Consensus 69 vv~P~s~~ev~~~v~~a~~~~i~v~~~Gg 97 (246)
+-.+....|+.++++.+++++.+++..-.
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~ 88 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITS 88 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEES
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeC
Confidence 44578889999999999999999977653
No 224
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.61 E-value=5.8e+02 Score=22.35 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEec-CCCCCceeeeCCCCeEEEcCCccHHHHHHHHhhcC
Q psy6765 73 KTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA-SLMNKILNFDELSGNVNSMSNALVTNRSLELSNTG 151 (246)
Q Consensus 73 ~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl-~~m~~i~~id~~~~~v~v~aG~~~~~l~~~L~~~g 151 (246)
-+.+|+..+++.+.+.++..+...||--+ .-+ .+ +++ +.+.+.-.+ ......--|..+.+..+.|.+.|
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPl---lr~---dl-~~li~~i~~~~~l---~~i~itTNG~ll~~~~~~L~~aG 114 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPL---VRR---GC-DQLVARLGKLPGL---EELSLTTNGSRLARFAAELADAG 114 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCC---ccc---cH-HHHHHHHHhCCCC---ceEEEEeChhHHHHHHHHHHHcC
Confidence 47899999999999999877776666544 211 11 111 111111000 01111233555556667777766
Q ss_pred ce---eecCCCchhH---HhhHHhhhhhh-c---cccccC---ccceEEcC-CCHHHHHHHHHHHHhCCCcE-----EEe
Q psy6765 152 VV---VLGVPLYDEV---IVSASLMNKIL-N---FDELSG---KSKLVLKP-KTTEEVSAILRYCNEQKIAV-----CPQ 212 (246)
Q Consensus 152 l~---~~~~p~s~~~---~~~~~~~~~~~-~---~~~~~~---~p~~vv~P-~s~~~v~~~v~~a~~~~~~~-----~~~ 212 (246)
+. +.-+...... ..+.....+.. + ....+. .-..|+.+ .+.+|+.++++++.++++.+ .|.
T Consensus 115 l~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~~ie~mP~ 194 (329)
T PRK13361 115 LKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFIEEMPL 194 (329)
T ss_pred CCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEEEEecccC
Confidence 52 2222211111 00000000000 0 001111 22345555 89999999999999998754 667
Q ss_pred cCCC
Q psy6765 213 GGNT 216 (246)
Q Consensus 213 ggG~ 216 (246)
|.+.
T Consensus 195 g~~~ 198 (329)
T PRK13361 195 GEID 198 (329)
T ss_pred CCcc
Confidence 6654
No 225
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=20.57 E-value=1.5e+02 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 62 QEGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 62 ~~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
....| ..|+.|.+.+|+..++++|.++.-|+.++
T Consensus 168 lr~iPn~~V~~Psd~~e~~~~l~~a~~~~~P~~i~ 202 (355)
T PTZ00182 168 FAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVFF 202 (355)
T ss_pred HhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 34555 45888999999999999999988899884
No 226
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=20.39 E-value=1.3e+02 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCCCCCCC
Q psy6765 72 PKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAG 104 (246)
Q Consensus 72 P~s~~ev~~~v~~a~~~~i~v~~~GgG~~~~g~ 104 (246)
|-++.|+..++...+..+-|+++-|||--|++.
T Consensus 213 ~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A 245 (617)
T COG3962 213 PPDERELADAAALIKSAKKPLIVAGGGVLYSGA 245 (617)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCceeechH
Confidence 568899999999999999999999999888654
No 227
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=20.36 E-value=2.5e+02 Score=22.05 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEeCCCHHHHHHHHHHHHh-CCCcEEEecCCCCC
Q psy6765 68 LVLKPKTTEEVSAILRYCNE-QKIAVCPQGGNTGV 101 (246)
Q Consensus 68 ~vv~P~s~~ev~~~v~~a~~-~~i~v~~~GgG~~~ 101 (246)
.-+.|.+.+++.+.++-+.+ .+.-+++-.||+|.
T Consensus 41 ~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 41 RAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
No 228
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=20.30 E-value=1.3e+02 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=32.5
Q ss_pred cccccccccCCCCc-cEEEeCCCHHHHHHHHHHHHhCCCcEEEe
Q psy6765 53 PYNVDWLKTQEGKS-KLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95 (246)
Q Consensus 53 ~~~~~~~~~~~~~p-~~vv~P~s~~ev~~~v~~a~~~~i~v~~~ 95 (246)
+++.++...+...| .-|+.|.+..|...++++|-++.-|+.++
T Consensus 266 hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv~il 309 (464)
T PRK11892 266 QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFL 309 (464)
T ss_pred ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcEEEE
Confidence 44444333445566 56889999999999999999888899983
No 229
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=20.24 E-value=6.1e+02 Score=22.43 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=74.2
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhCCCcEEEecCCC-CCCCCcccCCCeEEEecCCCCC-----cee--ee--CCCCeE
Q psy6765 63 EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNT-GVVAGGVPLYDEVIVSASLMNK-----ILN--FD--ELSGNV 132 (246)
Q Consensus 63 ~~~p~~vv~P~s~~ev~~~v~~a~~~~i~v~~~GgG~-~~~g~~~~~~~gvvidl~~m~~-----i~~--id--~~~~~v 132 (246)
.....+|+-|.+......+..++++.++|++.-+.++ .+.. .....+..+...+. +.. .+ ......
T Consensus 90 ~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~----~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va 165 (369)
T PRK15404 90 NDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTA----RGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIA 165 (369)
T ss_pred hCCceEEEcCCCchhHHHhHHHHHHCCCeEEecCCCCHHHhc----CCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 4457888889888888899999999999987644322 2211 11112222211000 000 00 011122
Q ss_pred EEcCCcc-----HHHHHHHHhhcCceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCC
Q psy6765 133 NSMSNAL-----VTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKI 207 (246)
Q Consensus 133 ~v~aG~~-----~~~l~~~L~~~gl~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~ 207 (246)
.+..... ...+.+.+.+.|..+.....+.....| ....... --...|++|+......+...+++-+++.++
T Consensus 166 ~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D---~~~~v~~-l~~~~~d~v~~~~~~~~~~~~~k~~~~~G~ 241 (369)
T PRK15404 166 VLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKD---FSALIAK-LKKENVDFVYYGGYHPEMGQILRQAREAGL 241 (369)
T ss_pred EEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCc---hHHHHHH-HHhcCCCEEEECCCchHHHHHHHHHHHCCC
Confidence 2222211 233455666777765432111111000 0111110 113578899888877899999999999987
Q ss_pred cEEEecC
Q psy6765 208 AVCPQGG 214 (246)
Q Consensus 208 ~~~~~gg 214 (246)
.....+.
T Consensus 242 ~~~~i~~ 248 (369)
T PRK15404 242 KTQFMGP 248 (369)
T ss_pred CCeEEec
Confidence 7544443
No 230
>KOG3728|consensus
Probab=20.02 E-value=1.8e+02 Score=24.80 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCCCCCCCcccCCCeEEEecCCCCCceeeeCC----CCeEEEcCCccHHHHHHHHhhcC
Q psy6765 76 EEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDEL----SGNVNSMSNALVTNRSLELSNTG 151 (246)
Q Consensus 76 ~ev~~~v~~a~~~~i~v~~~GgG~~~~g~~~~~~~gvvidl~~m~~i~~id~~----~~~v~v~aG~~~~~l~~~L~~~g 151 (246)
.|+.+++.+|+=.+ |+.+|=|-. ||.--..|-+|++...||..+.-.-+ +.++ +.|--..+.|.++|...|
T Consensus 118 hEliKLl~~Arckd-p~~iRiGT~---GGiGv~pGTvV~s~~A~n~~l~~e~eqiilGkrv-~Rpaqld~~l~~eL~~~~ 192 (308)
T KOG3728|consen 118 HELIKLLYYARCKD-PVFIRIGTC---GGIGVPPGTVVASKNAFNGLLRNEHEQIILGKRV-VRPAQLDKKLIRELLAFG 192 (308)
T ss_pred HHHHHHHHHccCCC-ceEEEEecc---CccCCCCccEEEehhhhhhhhhhhHHhhhcccee-echhhhhHHHHHHHHHhC
Confidence 67778888877655 677763222 22211245688888888875321111 2222 333333344444444333
Q ss_pred ceeecCCCchhHHhhHHhhhhhhccccccCccceEEcCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 152 VVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 211 (246)
Q Consensus 152 l~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~ 211 (246)
.... .++... .+. ++-.-...+-+++-+..+.--++.|=.+.++-+++.|++=+-
T Consensus 193 ~e~~--d~~~ti--~gn-TmctddFYEGQgRlDGa~CdysEkdK~afLek~~a~GVrNIE 247 (308)
T KOG3728|consen 193 VEAN--DGFQTI--SGN-TMCTDDFYEGQGRLDGAFCDYSEKDKMAFLEKLHALGVRNIE 247 (308)
T ss_pred CccC--CCCcee--ecc-ceecchhhcccccccccccCcchhhHHHHHHHHHHcCceeee
Confidence 2210 011100 000 000001112345667777788999999999999998886443
No 231
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.01 E-value=2e+02 Score=20.07 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=24.3
Q ss_pred cCccceEEcCCCHHHHHHHHHHHHhCCCcEEE
Q psy6765 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 211 (246)
Q Consensus 180 ~~~p~~vv~P~s~~~v~~~v~~a~~~~~~~~~ 211 (246)
...|.+|.+-.. +.-.++.+.|++|++|++-
T Consensus 15 ~~aP~VvAKG~g-~~A~~I~~~A~e~~VPi~~ 45 (82)
T TIGR00789 15 DKAPKVVASGVG-EVAERIIEIAKKHGIPIVE 45 (82)
T ss_pred CCCCEEEEEeCC-HHHHHHHHHHHHcCCCEEe
Confidence 356777777666 6677888999999999873
Done!