RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6765
(246 letters)
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
and conversion].
Length = 459
Score = 84.9 bits (210), Expect = 5e-19
Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 33 FKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAV 92
K+IL VLTD Y D + G V+ PK+ EEV+AILR NE I V
Sbjct: 2 LKRILGEL--NVLTDPADRAAYRTDASVYR-GLPLAVVFPKSEEEVAAILRLANENGIPV 58
Query: 93 CPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 127
P+GG T + G VP V++ S +N+IL D
Sbjct: 59 VPRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDP 92
Score = 75.3 bits (185), Expect = 1e-15
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G V+ PK+ EEV+AILR NE I V P+GG T + G VP V++ S +N+IL
Sbjct: 30 GLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVLDLSRLNRIL 88
Query: 241 NFDE 244
D
Sbjct: 89 EIDP 92
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain. This family consists
of various enzymes that use FAD as a co-factor, most of
the enzymes are similar to oxygen oxidoreductase. One of
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved
structure, the alignment includes the FAD binding site,
called the PP-loop, between residues 99-110. The FAD
molecule is covalently bound in the known structure,
however the residue that links to the FAD is not in the
alignment. VAO catalyzes the oxidation of a wide variety
of substrates, ranging form aromatic amines to
4-alkylphenols. Other members of this family include
D-lactate dehydrogenase, this enzyme catalyzes the
conversion of D-lactate to pyruvate using FAD as a
co-factor; mitomycin radical oxidase, this enzyme
oxidises the reduced form of mitomycins and is involved
in mitomycin resistance. This family includes MurB an
UDP-N-acetylenolpyruvoylglucosamine reductase enzyme
EC:1.1.1.158. This enzyme is involved in the
biosynthesis of peptidoglycan.
Length = 139
Score = 61.5 bits (150), Expect = 5e-12
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 67 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 126
V++P++ EEV+AI+R NE + V +GG + ++ V V++ S +N IL D
Sbjct: 2 AAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVL-TGGVVLDLSRLNGILEID 60
Query: 127 ELSG 130
G
Sbjct: 61 PEDG 64
Score = 61.1 bits (149), Expect = 6e-12
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 184 KLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
V++P++ EEV+AI+R NE + V +GG + ++ V V++ S +N IL D
Sbjct: 2 AAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVL-TGGVVLDLSRLNGILEID 60
Query: 244 E 244
Sbjct: 61 P 61
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD. This protein,
the glycolate oxidase GlcD subunit, is similar in
sequence to that of several D-lactate dehydrogenases,
including that of E. coli. The glycolate oxidase has
been found to have some D-lactate dehydrogenase activity
[Energy metabolism, Other].
Length = 413
Score = 60.9 bits (148), Expect = 8e-11
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 69 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDEL 128
V+ PK TE+V+ IL+ C+E +I + P+G TG+ G +P +++ MNKIL D +
Sbjct: 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVV 60
Query: 129 SG 130
+
Sbjct: 61 NL 62
Score = 60.9 bits (148), Expect = 8e-11
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244
V+ PK TE+V+ IL+ C+E +I + P+G TG+ G +P +++ MNKIL D
Sbjct: 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDV 59
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
Length = 499
Score = 57.5 bits (139), Expect = 1e-09
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 41 DNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG 100
+L ++ + PY D L + LV+ PK E+V A+L C+ ++ V +G TG
Sbjct: 31 GLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTG 90
Query: 101 VVAGGVPLYDEVIVSASLMNKILNFD 126
+ G +PL V++ + N+IL+ +
Sbjct: 91 LSGGALPLEKGVLLVMARFNRILDIN 116
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFD 243
LV+ PK E+V A+L C+ ++ V +G TG+ G +PL V++ + N+IL+ +
Sbjct: 58 LVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDIN 116
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 42.1 bits (100), Expect = 1e-04
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYC 85
N I + +I+ + VLTD + Y + ++ +G + V+ P T E+ +L+ C
Sbjct: 2 NKALINELTRIV--GSSHVLTDPAKTERYRKGF-RSGQGDALAVVFPGTLLELWRVLQAC 58
Query: 86 NEQKIAVCPQGGNTGVVAGGVPL---YDE--VIVSASLMNKI 122
+ Q NTG+ G P YD VI+S ++KI
Sbjct: 59 VAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKI 100
Score = 30.2 bits (69), Expect = 0.97
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPL---YDE--VIVSAS 234
G + V+ P T E+ +L+ C + Q NTG+ G P YD VI+S
Sbjct: 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTL 95
Query: 235 LMNKI 239
++KI
Sbjct: 96 RLDKI 100
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase. This model
represents L-Galactono-gamma-lactone dehydrogenase (EC
1.3.2.3). This enzyme catalyzes the final step in
ascorbic acid biosynthesis in higher plants. This
protein is homologous to ascorbic acid biosynthesis
enzymes of other species: L-gulono-gamma-lactone oxidase
in rat and L-galactono-gamma-lactone oxidase in yeast.
All three covalently bind the cofactor FAD.
Length = 541
Score = 42.4 bits (99), Expect = 1e-04
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W T E ++ +P+ EE+ I++ NE+K + P G +G+ G+ L +V+
Sbjct: 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVG--SGLSPNGIGLSRAGMVNL 110
Query: 117 SLMNKILNFDE 127
+LM+K+L DE
Sbjct: 111 ALMDKVLEVDE 121
Score = 36.2 bits (83), Expect = 0.013
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 183 SKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNF 242
++ +P+ EE+ I++ NE+K + P G +G+ G+ L +V+ +LM+K+L
Sbjct: 62 TRTFHQPEAIEELEGIVKQANEKKARIRPVG--SGLSPNGIGLSRAGMVNLALMDKVLEV 119
Query: 243 DE 244
DE
Sbjct: 120 DE 121
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 42.3 bits (99), Expect = 1e-04
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 13 ATKTVERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSV--KPYNVDWLKTQEGKSKLVL 70
+T+ V +G + ++ I + K IL D+ + DE KP N +V+
Sbjct: 82 STEFVVKGEHKLVPQELIDELKAIL-QDNMTLDYDERYFHGKPQNS--FHKAVNIPDVVV 138
Query: 71 KPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKI 122
P++ EEVS I++ CN+ K+ + P GG T + + + V + SLM +
Sbjct: 139 FPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSV 190
Score = 40.4 bits (94), Expect = 6e-04
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKI 239
+V+ P++ EEVS I++ CN+ K+ + P GG T + + + V + SLM +
Sbjct: 136 VVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSV 190
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases. This model
represents a family of at least two different sugar 1,4
lactone oxidases, both involved in synthesizing ascorbic
acid or a derivative. These include L-gulonolactone
oxidase (EC 1.1.3.8) from rat and
D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from
Saccharomyces cerevisiae. Members are proposed to have
the cofactor FAD covalently bound at a site specified by
Prosite motif PS00862; OX2_COVAL_FAD; 1.
Length = 438
Score = 38.7 bits (90), Expect = 0.002
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W KT ++ +P + EEV +L EQK V GG G + D ++
Sbjct: 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGG--GHSPSDIACTDGFLIHL 63
Query: 117 SLMNKILNFDELSGNVNSMS-------NALVTNRSLELSNTGVV 153
MNK+L FD+ + + + + +SN G +
Sbjct: 64 DKMNKVLQFDKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSI 107
Score = 32.6 bits (74), Expect = 0.16
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKI 239
S ++ +P + EEV +L EQK V GG G + D ++ MNK+
Sbjct: 12 SASPEVYYQPTSVEEVREVLALAREQKKKVKVVGG--GHSPSDIACTDGFLIHLDKMNKV 69
Query: 240 LNFDE 244
L FD+
Sbjct: 70 LQFDK 74
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
Length = 573
Score = 38.3 bits (89), Expect = 0.003
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 58 WLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSAS 117
W T E +++ +P++ EE+ I++ +E+ + P G +G+ G+ E +V+ +
Sbjct: 89 WSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVG--SGLSPNGLAFSREGMVNLA 146
Query: 118 LMNKILNFDE 127
LM+K+L D+
Sbjct: 147 LMDKVLEVDK 156
Score = 33.7 bits (77), Expect = 0.078
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244
+P++ EE+ I++ +E+ + P G +G+ G+ E +V+ +LM+K+L D+
Sbjct: 100 YHQPESLEELEDIVKEAHEKGRRIRPVG--SGLSPNGLAFSREGMVNLALMDKVLEVDK 156
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 31.4 bits (72), Expect = 0.31
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 43 RVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV 102
R+ T+ +K Y + G ++++++P+ EE+ A L+Y + + V GG + ++
Sbjct: 2 RIKTNV-PLKRYT--TFRIG-GPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL 57
Query: 103 --AGGVPLYDEVIVSASLMNKILNFDELSGN 131
GG+ V+ + LNF E+ G+
Sbjct: 58 VRDGGIGG---VV----IKLGKLNFIEIEGD 81
Score = 27.6 bits (62), Expect = 6.8
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV--AGGVPLYDEVIVSASLMNK 238
G ++++++P+ EE+ A L+Y + + V GG + ++ GG+ V+ +
Sbjct: 19 GPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIGG---VV----IKLG 71
Query: 239 ILNFDEL 245
LNF E+
Sbjct: 72 KLNFIEI 78
>gnl|CDD|237553 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 298
Score = 30.5 bits (70), Expect = 0.66
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 32 KFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIA 91
K++L R+L +E + Y + G + +++P E++ L+ E I
Sbjct: 1 LLKELLPALRGRLLENE-PLARYT--SFRVG-GPADYLVEPADIEDLQEFLKLLKENNIP 56
Query: 92 V 92
V
Sbjct: 57 V 57
Score = 28.5 bits (65), Expect = 3.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAV 209
G + +++P E++ L+ E I V
Sbjct: 29 GPADYLVEPADIEDLQEFLKLLKENNIPV 57
>gnl|CDD|173113 PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 302
Score = 30.2 bits (68), Expect = 0.89
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMN 237
++ G SKL L PKT ++ I + E+KI + GG + ++ D I+ +N
Sbjct: 28 KIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLN 87
Query: 238 KI 239
KI
Sbjct: 88 KI 89
Score = 29.8 bits (67), Expect = 1.2
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 64 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKI 122
G SKL L PKT ++ I + E+KI + GG + ++ D I+ +NKI
Sbjct: 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNKI 89
>gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 307
Score = 30.2 bits (68), Expect = 0.98
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 26 NDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYC 85
N Q +Q++ N+ +V ++ +K Y + KT G + + P EEV A+++Y
Sbjct: 3 NKDIYQALQQLIPNEKIKV---DEPLKRYT--YTKTG-GNADFYITPTKNEEVQAVVKYA 56
Query: 86 NEQKIAVCPQGGNTGVV--AGGV 106
+ +I V G + ++ GG+
Sbjct: 57 YQNEIPVTYLGNGSNIIIREGGI 79
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 172 KILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVV--AGGV 223
K + + G + + P EEV A+++Y + +I V G + ++ GG+
Sbjct: 26 KRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGI 79
>gnl|CDD|185003 PRK15043, PRK15043, transcriptional regulator MirA; Provisional.
Length = 243
Score = 28.7 bits (64), Expect = 2.5
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 3 LRQFVRHASLATKTVERGAYSILNDTHIQKFKQILSNDDN-------RVLTDEDSVKPYN 55
LR + R L G + + ND I + ++I DN ++L ++V N
Sbjct: 20 LRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQN 79
Query: 56 VDWLKTQE 63
W QE
Sbjct: 80 -GWRDQQE 86
>gnl|CDD|237777 PRK14652, PRK14652, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 302
Score = 28.7 bits (64), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 64 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG--NTGVVAGGVP 107
G + L+++P + +SA+LR E + + GG NT V GV
Sbjct: 34 GPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR 79
Score = 28.7 bits (64), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG--NTGVVAGGVP 224
G + L+++P + +SA+LR E + + GG NT V GV
Sbjct: 34 GPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR 79
>gnl|CDD|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon
proteobacterial. Members of this family are flagellar
hook proteins, designated FlgE, as found in the epsilon
subdivision of the Proteobacteria (Helicobacter,
Wolinella, and Campylobacter). These proteins differ
significantly in architecture from proteins designated
FlgE in other lineages; the N-terminal and C-terminal
domains are homologous, but members of this family only
contain a large central domain that is surface-exposed
and variable between strains.
Length = 719
Score = 28.4 bits (63), Expect = 4.5
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 18/97 (18%)
Query: 73 KTTEEVSAILRY-CNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE---- 127
+TTE++ A+L+ N K G+ + V +V ++A+ M +I N D+
Sbjct: 378 RTTEDLRALLQRDANYIK-----YDGSGYFASTDVNAAVKVTINANGMFEISNADDNDTE 432
Query: 128 ---LSGNVNSMSNALVTNRSLELS-----NTGVVVLG 156
LS NV S SN VT L + NTG + G
Sbjct: 433 PKNLSLNVTSYSNKNVTTNVLFKAIMKALNTGPLTEG 469
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 28.3 bits (63), Expect = 4.7
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 104 GGVPLYDEVIVSASLMNKI--LNFDELSGNVNSMSNALVTNRSLELSN---TGVVVLGVP 158
G L+D V+ + I LN + + +VN + + N + N G VV G P
Sbjct: 262 GTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGDVVEGRP 321
Query: 159 LYDEVIVSA 167
V + A
Sbjct: 322 ELTPVAIKA 330
>gnl|CDD|238897 cd01916, ACS_1, Acetyl-CoA synthase (ACS), also known as acetyl-CoA
decarbonylase, is found in acetogenic and methanogenic
organisms and is responsible for the synthesis and
breakdown of acetyl-CoA. ACS forms a heterotetramer
with carbon monoxide dehydrogenase (CODH) consisting of
two ACS and two CODH subunits. CODH reduces carbon
dioxide to carbon monoxide and ACS then synthesizes
acetyl-CoA from carbon monoxide, CoA, and a methyl group
donated by another protein (CoFeSP). ACS has three
structural domains, an N-terminal rossman fold domain
with a helical region at its N-terminus which interacts
with CODH, and two alpha + beta fold domains. A Ni-Fe-S
center referred to as the A-cluster is located in the
C-terminal domain. A large cavity exists between the
three domains which may bind CoA.
Length = 731
Score = 27.8 bits (62), Expect = 7.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 70 LKPKTTEEVSAILRYCNEQ 88
+KPKT ++ L Y EQ
Sbjct: 114 IKPKTLGDLEEALEYAEEQ 132
Score = 27.8 bits (62), Expect = 7.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 187 LKPKTTEEVSAILRYCNEQ 205
+KPKT ++ L Y EQ
Sbjct: 114 IKPKTLGDLEEALEYAEEQ 132
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 27.5 bits (62), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 23 SILNDTHIQKFKQILSNDDNRVLTDEDSVKPY 54
SI+ D +IQ +Q D + DEDS++P
Sbjct: 621 SIIADPNIQTLRQFF---DAEL--DEDSIRPI 647
>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
Length = 971
Score = 27.5 bits (61), Expect = 9.0
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 5 QFVRHASLATKTVERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYN 55
V +A+ K V +I ND I + K D+N L D ++ ++
Sbjct: 141 NSVFYANKNDKIVFNAMLAIKNDLKIDELKNCQDFDNNHFLNDNEAQSLFS 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.364
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,150,493
Number of extensions: 1130782
Number of successful extensions: 755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 48
Length of query: 246
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 152
Effective length of database: 6,768,326
Effective search space: 1028785552
Effective search space used: 1028785552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)