RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6765
(246 letters)
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 151 bits (385), Expect = 2e-43
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 17 VERGAYSILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTE 76
V + + L+ I +F I+ D LTD ++ Y + G S LVL+P +TE
Sbjct: 5 VSQLSPVTLSPELIARFTAIV--GDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTE 62
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDELSG 130
EV AI + NE ++A+ PQGGNTG+V G P EV++S M+KI D S
Sbjct: 63 EVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSN 116
Score = 112 bits (282), Expect = 6e-29
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKIL 240
G S LVL+P +TEEV AI + NE ++A+ PQGGNTG+V G P EV++S M+KI
Sbjct: 50 GHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIR 109
Query: 241 NFDELS 246
D S
Sbjct: 110 EIDTSS 115
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 110 bits (276), Expect = 6e-28
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 23 SILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAIL 82
+ N + + +++ + +LTD Y + Q G + V+ P + E+ +L
Sbjct: 6 TTDNKAFLNELARLV--GSSHLLTDPAKTARYRKGFRSGQ-GDALAVVFPGSLLELWRVL 62
Query: 83 RYCNEQKIAVCPQGGNTGVVAGGVPLY-----DEVIVSASLMNKILNFDE 127
+ C + Q NTG+ G P D VI+S ++K+ +
Sbjct: 63 KACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGK 112
Score = 85.9 bits (212), Expect = 2e-19
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLY-----DEVIVSAS 234
G + V+ P + E+ +L+ C + Q NTG+ G P D VI+S
Sbjct: 43 QGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTL 102
Query: 235 LMNKILNFDE 244
++K+ +
Sbjct: 103 RLDKLHVLGK 112
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 87.1 bits (216), Expect = 6e-20
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 23 SILNDTHIQKFKQILSNDDNRVLTDEDSVKPY-----NVDWLKTQEGKSK----LVLKPK 73
+++ K D ++ D+ + + D ++ + G+ K L++ P
Sbjct: 88 PKQYPEFVRELKAFFLPD--QLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPH 145
Query: 74 TTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE---VIVSASLMNKILNFDELSG 130
+ EEV +++ ++ + + P GG + +V P+ +E V + MNK+L D
Sbjct: 146 SHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREM 205
Query: 131 NV 132
Sbjct: 206 TA 207
Score = 74.4 bits (183), Expect = 1e-15
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 185 LVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDE---VIVSASLMNKILN 241
L++ P + EEV +++ ++ + + P GG + +V P+ +E V + MNK+L
Sbjct: 140 LIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLW 199
Query: 242 FDE 244
D
Sbjct: 200 VDR 202
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 84.7 bits (210), Expect = 5e-19
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 27 DTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSK--LVLKPKTTEEVSAILRY 84
+ +QKF+ +L +D VL + D + PYN + + + T E+V +++
Sbjct: 18 NKAVQKFRALLGDD--NVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKI 75
Query: 85 CNEQKIAVCPQGGNTGVVAGG-VPLYD-EVIVSASLMNKILNFDE 127
CNE KI + G P+ +VI+ MNKI+ D
Sbjct: 76 CNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDP 120
Score = 67.4 bits (165), Expect = 4e-13
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG-VPLYD-EVIVSASLMNKILNFD 243
+ T E+V +++ CNE KI + G P+ +VI+ MNKI+ D
Sbjct: 60 AVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKID 119
Query: 244 E 244
Sbjct: 120 P 120
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 76.8 bits (189), Expect = 3e-16
Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 27 DTHIQKFKQIL-------SNDDNRVLTDEDSVKPYNVDWLKTQEGKSKL---VLKPKTTE 76
+ IQ +I+ + ++++ + D + L ++ P+
Sbjct: 22 NEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVA 81
Query: 77 EVSAILRYCNEQKIAVCPQGG--NTGVVAGGVPLYDEVIVSAS-LMNKILNFDE 127
+V +I+ N+ + P N+G + V++ MN++L +
Sbjct: 82 DVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNV 135
Score = 66.1 bits (161), Expect = 1e-12
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 186 VLKPKTTEEVSAILRYCNEQKIAVCPQGG--NTGVVAGGVPLYDEVIVSAS-LMNKILNF 242
++ P+ +V +I+ N+ + P N+G + V++ MN++L
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 243 DE 244
+
Sbjct: 134 NV 135
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 73.3 bits (179), Expect = 4e-15
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 46 TDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGG 105
D + +W K + V PKT ++V + + +E + P+G G
Sbjct: 16 NDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLT 75
Query: 106 VP--LYDEVIVSASLMNKILNFD 126
V E ++ A M +
Sbjct: 76 VEKGANVEKVILADTMTHLNGIT 98
Score = 64.4 bits (156), Expect = 4e-12
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 177 DELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVP--LYDEVIVSAS 234
E+ + V PKT ++V + + +E + P+G G V E ++ A
Sbjct: 30 KEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILAD 89
Query: 235 LMNKILNFD 243
M +
Sbjct: 90 TMTHLNGIT 98
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD
SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 67.2 bits (163), Expect = 5e-13
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG----VVAGGVPLYDEV 112
+W + P++ +EV + + + V +G +A GV V
Sbjct: 21 NWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVV 80
Query: 113 IVSASLMNKILNFDE 127
++ + ++ D
Sbjct: 81 LLDTTRYLTAMSIDA 95
Score = 60.2 bits (145), Expect = 1e-10
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 178 ELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG----VVAGGVPLYDEVIVSA 233
++ P++ +EV + + + V +G +A GV V++
Sbjct: 25 DIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDT 84
Query: 234 SLMNKILNFDE 244
+ ++ D
Sbjct: 85 TRYLTAMSIDA 95
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 53.5 bits (128), Expect = 2e-08
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 41 DNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQ---KIAVCPQGG 97
D ++ TD ++ + D+ VL P +T ++ A+L N + +G
Sbjct: 44 DGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGR 103
Query: 98 NTGVVAGGVPLYDEVIVSASLMNKILNFDELS 129
+ G V+V+ + + ++
Sbjct: 104 GHS-LMGQAFAPGGVVVNMASLGDAAAPPRIN 134
Score = 39.3 bits (91), Expect = 8e-04
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 185 LVLKPKTTEEVSAILRYCNEQ---KIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILN 241
VL P +T ++ A+L N + +G + G V+V+ + +
Sbjct: 71 AVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHS-LMGQAFAPGGVVVNMASLGDAAA 129
Query: 242 FDELS 246
++
Sbjct: 130 PPRIN 134
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO;
HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB:
4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A*
Length = 481
Score = 51.3 bits (122), Expect = 9e-08
Identities = 11/93 (11%), Positives = 26/93 (27%)
Query: 40 DDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNT 99
+ + + W +T + ++ P V A+ R G
Sbjct: 18 GSHMLSVGATTTATRLTGWGRTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLG 77
Query: 100 GVVAGGVPLYDEVIVSASLMNKILNFDELSGNV 132
+++ + +N I + D + V
Sbjct: 78 RSYGDNAQNGGGLVIDMTPLNTIHSIDADTKLV 110
Score = 40.9 bits (95), Expect = 2e-04
Identities = 8/65 (12%), Positives = 18/65 (27%)
Query: 180 SGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKI 239
+ ++ P V A+ R G +++ + +N I
Sbjct: 41 PSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQNGGGLVIDMTPLNTI 100
Query: 240 LNFDE 244
+ D
Sbjct: 101 HSIDA 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-07
Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 67/263 (25%)
Query: 2 LLRQFVRHASLATKTVERGAYSILNDTHIQKFKQ-ILSNDD-----NRVLTDEDSVKPYN 55
L+ +F+ + S + + G + + + + +F+ L +D ++L + D+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 56 VDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQ--G-GNTGVVAGGVPLYDEV 112
+ +K + +P + SA+ R E + G GNT Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-------Y--- 169
Query: 113 IVSASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNK 172
F+EL ++ + LV +L L L + + + +
Sbjct: 170 ------------FEELR-DLYQTYHVLVG----DLIKFSAETL-SELIRTTLDAEKVFTQ 211
Query: 173 ILNFDE-LSGKSKLVLKPKT----TEEVS-------AILRYCNEQKIA-VCPQ------G 213
LN E L S P + +S + Y K+ P
Sbjct: 212 GLNILEWLENPSN---TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 214 GNTGVVAGGVPLYDEVIVSASLM 236
G TG G +V+A +
Sbjct: 269 GATGHSQG--------LVTAVAI 283
Score = 34.6 bits (79), Expect = 0.030
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 49/150 (32%)
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEV-IVSA--SLMNKILNFDELSGNVN 133
E +A L +A + + V +V M + DEL +
Sbjct: 1766 EYAA-L---------AS--------LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 134 SMSNALVTNRSLELSNTGVVVLGVPLYD-EVIVS--ASLMNKIL---NFDE------LSG 181
M A+ N G V + +V ++ N++ +G
Sbjct: 1808 GMI-AI---------NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 182 KSKLVLKPKTTEEVSAILRYCNEQKIAVCP 211
+ + + V+ +L + QKI +
Sbjct: 1858 DLRAL------DTVTNVLNFIKLQKIDIIE 1881
Score = 28.1 bits (62), Expect = 3.9
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 32/111 (28%)
Query: 2 LLRQFVRHASLATKTVERGA-----YSI--LNDTHIQKFKQILSNDDNRVLTDEDSVKP- 53
++ R V R Y + +N + S + + + + +
Sbjct: 1785 VVFY--R-GMTMQVAVPRDELGRSNYGMIAINPGRVAA---SFSQEALQYVVERVGKRTG 1838
Query: 54 -------YNVDWLKTQ---EGKSKLVLKPKTTEEVSAILRYCNEQKIAVCP 94
YNV+ Q G + + + V+ +L + QKI +
Sbjct: 1839 WLVEIVNYNVE--NQQYVAAGDLRAL------DTVTNVLNFIKLQKIDIIE 1881
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 46.9 bits (111), Expect = 2e-06
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 57 DWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSA 116
+W +K +L+P + + + A++ V G P V++S
Sbjct: 12 NWAGNITYTAKELLRPHSLDALRALVADSAR----VRVLGSGHSFNEIAEPGDGGVLLSL 67
Query: 117 SLMNKILNFDELSGNV 132
+ + +++ D + V
Sbjct: 68 AGLPSVVDVDTAARTV 83
Score = 40.4 bits (94), Expect = 3e-04
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 179 LSGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNK 238
++ +K +L+P + + + A++ V G P V++S + +
Sbjct: 17 ITYTAKELLRPHSLDALRALVADSAR----VRVLGSGHSFNEIAEPGDGGVLLSLAGLPS 72
Query: 239 ILNFDE 244
+++ D
Sbjct: 73 VVDVDT 78
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, NI degradation; HET: FAD;
1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Length = 459
Score = 45.5 bits (108), Expect = 7e-06
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 20/102 (19%)
Query: 144 SLELSNTGVVVL-GVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYC 202
+ LS G V+ +D + + L+ + + +V+ +RY
Sbjct: 7 ATPLSIQGEVIYPDDSGFDAIANIWDGR--------HLQRPSLIARCLSAGDVAKSVRYA 58
Query: 203 NEQKIAVCPQGG-----NTGVVAGGVPLYDEVIVSASLMNKI 239
+ + + + G GG +++ LMN I
Sbjct: 59 CDNGLEISVRSGGHNPNGYATNDGG------IVLDLRLMNSI 94
Score = 41.7 bits (98), Expect = 1e-04
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG-----NTGVV 102
+ ++ + L+ + + +V+ +RY + + + + G
Sbjct: 25 DAIANIWD----GRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN 80
Query: 103 AGGVPLYDEVIVSASLMNKI 122
GG +++ LMN I
Sbjct: 81 DGG------IVLDLRLMNSI 94
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structura genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 40.8 bits (95), Expect = 2e-04
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 41 DNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCN-EQKIAVCPQGG-- 97
+L + D+ K V++P E+++ ++ K+ V +G
Sbjct: 37 QGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGH 96
Query: 98 ---NTGVVAGGVPLYDEVIVSASLMNKI 122
+ GG ++V S +
Sbjct: 97 SINGQAMAEGG------LVVDMSTTAEN 118
Score = 39.3 bits (91), Expect = 7e-04
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 20/130 (15%)
Query: 116 ASLMNKILNFDELSGNVNSMSNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILN 175
A + L D + + + + S L+ G ++ G D MN
Sbjct: 3 AYIEPYFLENDAEAASAATAAGKSTDGVSESLNIQGEILCGGAAADIAGRDFGGMN---- 58
Query: 176 FDELSGKSKLVLKPKTTEEVSAILRYCN-EQKIAVCPQGG-----NTGVVAGGVPLYDEV 229
K V++P E+++ ++ K+ V +G + GG +
Sbjct: 59 ----CVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMAEGG------L 108
Query: 230 IVSASLMNKI 239
+V S +
Sbjct: 109 VVDMSTTAEN 118
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 40.1 bits (94), Expect = 4e-04
Identities = 13/106 (12%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 33 FKQILSNDDNRVLTDEDS-----VKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNE 87
+ LS + + V+P+N+ + + +TT + + ++ +
Sbjct: 3 IEACLSAAGVPIDIPGTADYERDVEPFNIRL----PYIPTAIAQTQTTAHIQSAVQCAKK 58
Query: 88 QKIAVCPQGGNTGVVAGGVPLYDE-VIVSASLMNKILNFDELSGNV 132
+ V + G + G + ++V M ++++++ +G
Sbjct: 59 LNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIA 104
Score = 38.5 bits (90), Expect = 0.001
Identities = 10/104 (9%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 143 RSLELSNTGVVVL-GVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRY 201
+ + + + G Y+ + ++ L + + +TT + + ++
Sbjct: 4 EACLSAAGVPIDIPGTADYERDVEPFNIR--------LPYIPTAIAQTQTTAHIQSAVQC 55
Query: 202 CNEQKIAVCPQGGNTGVVAGGVPLYDE-VIVSASLMNKILNFDE 244
+ + V + G + G + ++V M ++++++
Sbjct: 56 AKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYND 99
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 40.1 bits (94), Expect = 5e-04
Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 33 FKQILSNDDNRVLTDEDS-----VKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNE 87
L+ D ++ +N+ + + P++TE+++A ++ +
Sbjct: 9 INACLAAADVEFHEEDSEGWDMDGTAFNLRV----DYDPAAIAIPRSTEDIAAAVQCGLD 64
Query: 88 QKIAVCPQGGNTGVVAGGVPLYDE-VIVSASLMNKILNFDE 127
+ + +GG + G D +++ M ++ + D+
Sbjct: 65 AGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRV-SVDD 104
Score = 35.9 bits (83), Expect = 0.009
Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 147 LSNTGVVVL--GVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNE 204
L+ V +D + +L + + P++TE+++A ++ +
Sbjct: 13 LAAADVEFHEEDSEGWDMDGTAFNLR--------VDYDPAAIAIPRSTEDIAAAVQCGLD 64
Query: 205 QKIAVCPQGGNTGVVAGGVPLYDE-VIVSASLMNKILNFDE 244
+ + +GG + G D +++ M ++ + D+
Sbjct: 65 AGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRV-SVDD 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 48/267 (17%), Positives = 80/267 (29%), Gaps = 89/267 (33%)
Query: 42 NRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGGNTG- 100
+R+ D YNV + + LK + A+L + + + G +G
Sbjct: 117 DRLYNDNQVFAKYNVS-------RLQPYLKLRQ-----ALLELRPAKNVLIDGVLG-SGK 163
Query: 101 -VVAGGVPLYDEVIVSASLMNKI--LNFDELSGNVNS------MSNALVTNRSLELSNTG 151
VA V + + KI LN N NS M L+ ++
Sbjct: 164 TWVALDV-CLSYKVQCK-MDFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 152 VVVLGVPL-----------------Y-------DEV----IVSASLMN---KIL------ 174
+ L Y V +A N KIL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFK 275
Query: 175 -NFDELSGK--SKLVLKPK----TTEEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYD 227
D LS + + L T +EV ++L + + P+ V P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-----EVLTTNPRRL 330
Query: 228 EVIVSASLMN--------KILNFDELS 246
+I + S+ + K +N D+L+
Sbjct: 331 SII-AESIRDGLATWDNWKHVNCDKLT 356
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 38.7 bits (90), Expect = 0.001
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 36 ILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQ 95
+ S D + + N + + K ++ P + EE+S +R + + +
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 96 GG-----NTGVVAGGVPLYDEVIVSASLMNKILNFDELSGNV 132
G + +++ +N++ + D S
Sbjct: 76 SGGHSYEGLSYTSDT----PFILIDLMNLNRV-SIDLESETA 112
Score = 36.0 bits (83), Expect = 0.010
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 152 VVVLGVPLYDEV-IVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIAVC 210
V D + S+ N + + L K ++ P + EE+S +R + +
Sbjct: 15 TVFSADSDSDFNRFLHLSIQNPLFQ-NSLISKPSAIILPGSKEELSNTIRCIRKGSWTIR 73
Query: 211 PQGG-----NTGVVAGGVPLYDEVIVSASLMNKI 239
+ G + +++ +N++
Sbjct: 74 LRSGGHSYEGLSYTSDT----PFILIDLMNLNRV 103
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan
synthesis, cell WALL, cell division, oxidoreductase,
NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus
aureus} SCOP: d.145.1.2 d.146.1.1
Length = 326
Score = 37.1 bits (87), Expect = 0.003
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 23 SILNDTHIQKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAIL 82
+N Q +Q++ N+ ++ DE +K Y + KT G + + P EEV A++
Sbjct: 12 DPINKDIYQALQQLIPNE--KIKVDE-PLKRYT--YTKTG-GNADFYITPTKNEEVQAVV 65
Query: 83 RYCNEQKIAVCPQGG--NTGVVAGGVPLYDEVIVSASLMNKILNFDELSGN 131
+Y + +I V G N + GG +++S ++ I E+S +
Sbjct: 66 KYAYQNEIPVTYLGNGSNIIIREGG---IRGIVISLLSLDHI----EVSDD 109
Score = 32.1 bits (74), Expect = 0.14
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG--NTGVVAGGVPLYDEVIVSASLMNK 238
G + + P EEV A+++Y + +I V G N + GG +++S ++
Sbjct: 47 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG---IRGIVISLLSLDH 103
Query: 239 I 239
I
Sbjct: 104 I 104
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FAD; 2.69A {Listeria monocytogenes}
Length = 322
Score = 35.2 bits (82), Expect = 0.012
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 25 LNDTHIQKFKQILSN-----DDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVS 79
L ++ ++N + +E + Y + KT G + + + PKT EE
Sbjct: 13 LGTENLYFQSNAMNNLQTKFPHIAIKLNE-PLSKYT--YTKTG-GAADVFVMPKTIEEAQ 68
Query: 80 AILRYCNEQKIAVCPQGG--NTGVVAGGVPLYDEVIVSASLMNKI 122
++ YC++ KI + G N + GG VI+ L+ I
Sbjct: 69 EVVAYCHQNKIPLTILGNGSNLIIKDGG---IRGVILHLDLLQTI 110
Score = 32.5 bits (75), Expect = 0.094
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 181 GKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG--NTGVVAGGVPLYDEVIVSASLMNK 238
G + + + PKT EE ++ YC++ KI + G N + GG VI+ L+
Sbjct: 53 GAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGG---IRGVILHLDLLQT 109
Query: 239 I 239
I
Sbjct: 110 I 110
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 34.9 bits (80), Expect = 0.022
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG------NTGV 101
ED + N+ + G + + + E+ +L V + G
Sbjct: 45 EDLRRGENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVAN 100
Query: 102 VAGGVPLYDEVIVSASLMNKI 122
V++ S ++ +
Sbjct: 101 SDVR------VVMDMSRLSAV 115
Score = 34.5 bits (79), Expect = 0.030
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 20/110 (18%)
Query: 136 SNALVTNRSLELSNTGVVVLGVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEV 195
+ L S + + V G Y+++ +L G + + + E+
Sbjct: 20 TENLYFQGSEFMKHIDSVAPGDIRYEDLRRGENLR--------FVGDPEEIHLVGSAAEI 71
Query: 196 SAILRYCNEQKIAVCPQGG------NTGVVAGGVPLYDEVIVSASLMNKI 239
+L V + G V++ S ++ +
Sbjct: 72 EQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVR------VVMDMSRLSAV 115
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 34.8 bits (80), Expect = 0.024
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 48 EDSVKPYNVDWLKTQEGKSKLVLKPKTTEEVSAILRYCNEQKIAVCPQGG------NTGV 101
+ N + + + P T ++V A L+ + V + G G
Sbjct: 21 IELSHSDNHRF----VVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGT 76
Query: 102 VAGGVPLYDEVIVSASLMNKI 122
+++ ++ I
Sbjct: 77 PRRD------LVLDLHNLHAI 91
Score = 34.5 bits (79), Expect = 0.032
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 150 TGVVVL-GVPLYDEVIVSASLMNKILNFDELSGKSKLVLKPKTTEEVSAILRYCNEQKIA 208
V P Y E+ S + + + P T ++V A L+ +
Sbjct: 9 PPFTVGREDPRYIELSHSDNHR--------FVVEPEEFFLPATPDDVVASLQKAVTEGRG 60
Query: 209 VCPQGG------NTGVVAGGVPLYDEVIVSASLMNKI 239
V + G G +++ ++ I
Sbjct: 61 VACRSGGHCGQDFVGTPRRD------LVLDLHNLHAI 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.92
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 19/47 (40%)
Query: 31 QKFKQILSNDDNRVLTDEDSVKPYNVDWLKTQEGKSKLVLKPKTTEE 77
Q K++ + S+K Y D S L K T E
Sbjct: 20 QALKKL-----------QASLKLYADD--------SAPALAIKATME 47
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 27.8 bits (61), Expect = 3.8
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 77 EVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLM--NKILNFDELSGNVNS 134
E +A++ KI + + G++ V+ + I+ +S+M N + NF
Sbjct: 185 EKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAK 244
Query: 135 MSNALVT--NRSLELSNTGVVVLGVPL---YDEVIVSASLMNKILNFDELSGKSKLVLKP 189
L++ ++ + + ++ G + Y + + + + K + FD +G L +
Sbjct: 245 KQGVLLSVHLKATMMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGDLYARI 304
Query: 190 KTT-----EEVSAILRYCNEQKIAVCPQGGNTGVVAGGVPLYDEVIVSASLMNKILNFDE 244
KT +E+ A ++ Q+ + + G+ VP VIV AS+ I + +
Sbjct: 305 KTLPEAKQKEIEADIQAVYAQRPQLAMVNSDKGITNLHVPSD--VIVDASMPAMIRDSGK 362
Query: 245 L 245
+
Sbjct: 363 M 363
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 27.2 bits (61), Expect = 5.9
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 74 TTEEVSAILRYCNEQKIAVCP---QGGNTGVVAGGVPLYDEVI 113
T E++ + C + V +GG GG+ L +V+
Sbjct: 388 TEAELNLLYELCAKAGAEVALSWAKGG-----EGGLELARKVL 425
Score = 27.2 bits (61), Expect = 5.9
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 191 TTEEVSAILRYCNEQKIAVCP---QGGNTGVVAGGVPLYDEVI 230
T E++ + C + V +GG GG+ L +V+
Sbjct: 388 TEAELNLLYELCAKAGAEVALSWAKGG-----EGGLELARKVL 425
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.364
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,630,588
Number of extensions: 215079
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 49
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.8 bits)